ID:

dsi_11855

 Coordinate:

2r:12762174-12762448 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2r_12762449_12762709_-]; CDS [2r_12762449_12762709_-]; exon [2r_12761967_12762173_-]; CDS [2r_12761967_12762173_-]; intron [2r_12762174_12762448_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTCACGTTCCGCAACATTTTCGAGGGCACTCCGTTCCACAAGATGTTCGGTAAAGGCGAGAGGCTAAAGCGTTGCAATTGTTTCGTTACTATGCTGACTGACATCCTGGCGCACGTCGTTTTGTTTTCGTTCCATTCAATCTGCAACTAAACGCTGTTTTTGTACAGTGATGGGGGAGCATTCATAAGCGTTCATAACCTTTCCCACCACTGTTTCCATGCTAAGTCTAAGCTAATCCTCGCAGCTCGAGCGTTTATTACTAATTGCATTTACCTTCCTGTTATTTTGCATCTCAACTTACCATTTACTCCTATTTCTTCACAGAGAAAAAGCGCCGCATATACGATGAGTATGGCAAAGATGGACTGGGCGAT
**************************************************((((((..((.(((...(((.((((((((((...........(((.((.(((......((((.(((......)))...))))....))).)).)))..((((((((....((((((((((.((((((((....................)))))))).))))))......(((.......)))........))))....))))))))....))))))))...)))))))).)).))))))...................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
...........................................................................................................................................................................................................................................................................................................................................................TGAGTATGGCAAAGATGGACTGGGCG.. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
CTTCACGTTCCGCAACATTTTCGAGGGC........................................................................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................AGTATGGCAAAGATGGACTGGGC... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................GGCAAAGATGGACTGGGC... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................TGAGTATGGCAAAGATGGACTGGG.... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................GGTGGAGCATCCATAAGCGTT...................................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................CGATGAGTATGGCAAAGATGGACTGGG.... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................................................................................................ATGGCAAAGATGGACTGGGG... 20 1 2 0.50 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................AGGCTAATCCTCGCA................................................................................................................................... 15 1 2 0.50 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................................................................................................CGATGAGTATGGAACAGA............. 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TCTTGTTCAGTGATCGGGG...................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................CAAAGTTGGACTGGACGCT 19 3 13 0.08 1 0 0 0 1 0 0 0 0 0
.....................................................AAGGCGCGAGAGTAAAGCG............................................................................................................................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................TGTCCAGTGGTGGGGGA..................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................GCTAAGTTTAAGCTA............................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GAAGTGCAAGGCGTTGTAAAAGCTCCCGTGAGGCAAGGTGTTCTACAAGCCATTTCCGCTCTCCGATTTCGCAACGTTAACAAAGCAATGATACGACTGACTGTAGGACCGCGTGCAGCAAAACAAAAGCAAGGTAAGTTAGACGTTGATTTGCGACAAAAACATGTCACTACCCCCTCGTAAGTATTCGCAAGTATTGGAAAGGGTGGTGACAAAGGTACGATTCAGATTCGATTAGGAGCGTCGAGCTCGCAAATAATGATTAACGTAAATGGAAGGACAATAAAACGTAGAGTTGAATGGTAAATGAGGATAAAGAAGTGTCTCTTTTTCGCGGCGTATATGCTACTCATACCGTTTCTACCTGACCCGCTA
**************************************************((((((..((.(((...(((.((((((((((...........(((.((.(((......((((.(((......)))...))))....))).)).)))..((((((((....((((((((((.((((((((....................)))))))).))))))......(((.......)))........))))....))))))))....))))))))...)))))))).)).))))))...................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body
...........................GTGAGGCTAGGTGTTC............................................................................................................................................................................................................................................................................................................................................ 16 1 4 0.75 3 3 0 0 0 0
...........................GTGAGGCTAGGTGTT............................................................................................................................................................................................................................................................................................................................................. 15 1 6 0.33 2 2 0 0 0 0
..........................AGTGAGGCTAGGTGTT............................................................................................................................................................................................................................................................................................................................................. 16 2 20 0.30 6 6 0 0 0 0
................................................................................................................................................................................................................................................................................................................AAATGTGGATAAGGCAGTGT................................................... 20 3 7 0.29 2 0 2 0 0 0
............................TGAGGCTAGGTGTTC............................................................................................................................................................................................................................................................................................................................................ 15 1 12 0.17 2 2 0 0 0 0
..........................AGTGAGGCTAGGTGTTC............................................................................................................................................................................................................................................................................................................................................ 17 2 13 0.15 2 2 0 0 0 0
.........................................................................................................................................................................................................................................................TCGCTAATAAGGATTAGCGT.......................................................................................................... 20 3 8 0.13 1 0 0 1 0 0
....TGCTAGGCGTTGTAAAAC................................................................................................................................................................................................................................................................................................................................................................. 18 2 10 0.10 1 0 0 0 0 1
...............................GGCCATGTGTTCTCCAAGC..................................................................................................................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 1 0
...............................................................................................................................................................................................................................................................................ATGGAAGGACAAAAA......................................................................................... 15 1 20 0.05 1 0 0 1 0 0
......................................................................................AATGATACCAGTGACT................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0
......................................................................................................................................................................................................AGCAAGGGTGGTGACTAAG.............................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................AAGAACATGTCACTCC.......................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:12762124-12762498 - dsi_11855 CTTCACGTTCCGCAACATTTTCGAGGGCACTCCGTTCCACAAGATGTTCGGTAAAGG------CGAGAGGC-----TAAAGCGTTGCAATTGT-----TTCGTTA------------------------CT--------ATGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------TTGTT-TTCGTTC--CA----TT----CAA--TCTGCAACTAAACGCTGTTTTTGTACAGTGATGGGGGAG--CATTCATAA-GCGTTCATA-------------------------------------------------------------------------------------------------------------------------------------------ACCTTTCCCACCACTGTTTCCATGCTAAGTCTAAGCTA--------------------------------------------------ATCC--TC---------------GCAGCTCGAGCGTTTATTACTAAT----------------------------------T--------GCATTT-ACCTTCCTGTTATTTTGC-ATCTCAACTTACCATTTACT-------------------------------------------CC---------TAT---TTCTTCACAGAGAAAAAGCGCCGCATATACGATGAGTATGGCAAAGATGGACTGGGCGAT
droSec2 scaffold_1:9591759-9592122 - CTTCACGTTCCGCAACATTTTCGAGGGCACTCCGTTCCACAAGATGTTCGGTAAAGG------CGAGAGGC-----TAAAGCGTTGCAATTGT-----TTTGTTA------------------------CT--------ATGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------TTGTT-TTCGTTC--CA----TT----CAA--TCTGCAACTAAACGCTGTTTTTGTACAGTGATGGGGGAG--CATTCATAA-GCGTTCATA-------------------------------------------------------------------------------------------------------------------------------------------ACCTTTCCCACCACTGTTTCCATG-----------CTA--------------------------------------------------ATCC--TC---------------GCAGTTCGAGCGTTTATTACTAAT----------------------------------T--------GCATTT-ACCTTCCTCTTATTTCGC-ATTCCAACTTACCATTTACT-------------------------------------------CC---------CAT---TTCTTCACAGAGAAAAAGCGCCGCATATACGATGAGTATGGCAAAGATGGACTGGGCGAT
dm3 chr2R:12092487-12092874 - CTTCACGTTTCGCAACATTTTCGAGGGCACTCCGTTCCACAAGATGTTCGGTAAAGG------CGAGAGGC----CAAAAGCGTTGCAATTGT-----TTCGTTA------------------------CTTTGG--TTTTGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------TTGTTTTTCGTTCGTCA----TT----CTA--TCTGCAACTAAACGCTGTTTTCGTACAGTGATGGGGGAG--CATTCATAA-GCATTCATA-------------------------------------------------------------------------------------------------------------------------------------------ACCTTTCCCACCACTGTTTCCATGCTAAGTCTAAGCTA--------------------------------------------------ATCC--TC---------------GCAGCTCGAGCGTTTATTACTAAT------------------------------TAATT--------GCATTT-ACTTTCCTGTTGTTTCAC-A-CCCAACTTACCATGTACT-------------------------------------------CC---------CAT---TTCTTAACAGAGAAAAAGCGTCGCATATACGATGAGTATGGCAAAGATGGACTGGGCGAT
droEre2 scaffold_4845:13765374-13765750 + CTTCACCTTCCGCAACATTTTCGAGGGCACTCCGTTCCACAAGTTGTTCGGTAAAGC------CGAAAGGCAAAGCAAAGGCGTTGCAATTGT-----TTCGTTA------------------------CTTTGG--TTTTGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------CTGTT-TTTGTTC--CA----TT----CAA--CCTGCAACTAAACGCTGTTTTTGCACAGTGATGGG-GAG--CATTCATAAAGTGT------------------------------------------------------------------------------------------------------------------------------------------------ACCTTTCCCACCACTATTTCCATGCTAGGTTTAAGCTA--------------------------------------------------ATCC--TC---------------GCAGCTCGAGCGTTTATTACTAAT----------------------------------T--------TCACTT-GCCCTCCTGATATTTC-CG----CCACTTACCCTGTACT-------------------------------------------CT---------TAC---ATCTCCACAGAGAAAAAACGCCGCATATATGATGAGTATGGCAAGGATGGACTAGGCGAT
droYak3 2R:16890021-16890392 + CTTCACCTTCCGCAACATTTTCGAGGGCACTCCGTTCCACAAGCTGTTCGGTAAAGC------CGAGAGGC-----AGAAGTGTTGCAATCGT-----TTTGTTT------------------------ATTTGG--TTTTGCTGACTGACA-------ACC-TGGCGCACGTTGTT--------------------------------------------------------------------------------CTGTTTTTTGTTC--CA----TT----CTA--TCTGCAACTAAGCGCTGTTTTTGCACAGTGATGGG-GAG--CATTCATAA-------ATA-----------------------------------------------------------------------------------------------------------------------------------------GTACCTTTCCCCCCACTGTTTCCATGCTAGGTTTAAGCTA--------------------------------------------------ATCC--TC---------------GCAGCTCGAGCGTTTACTACTAAT----------------------------------T--------CAATTT-ATCCTCCTGTTAT----C-G-CCCCACTTACGCAGTACT-------------------------------------------CT---------TAT---TTCTTCACAGAGAAAAAGCGCCGCATATACGATGAGTATGGCAAAGATGGACTGGGTGAT
droEug1 scf7180000409672:1002042-1002484 - CTTCACCTTCCGCAACATTTTCGAGGGCACACCGTTCCACAAGATGTTCGGTAAAGC------C-AGAAGC-----AGAAGCGTTGCAATTGT-----TTGGTTA------------------------TTTTGG--TTTTGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------TTGTT-TTTGTTC--CG----TA----CATTTTTTGCAACTAATCGCTGTTCCT-TACAGTGATGGG-AAA--CATATATAT---ATATATATATATATATATATATATATATGTATTAACTGGCTTTTAACCTGCCTAGGTC-------A------------------------------------------ATAATAA--------------------------TAAGAACCTATCCCATCACTGATTCCTTGTTAAATCTAAGCTA--------------------------------------------------ACCCC-CT---------------GCAGCTCCAGCGTTAGTTACTAAC----------------------------------T--------AAATGAAGTTTTTTTACAATTTT-TG----TGACTTATCTCATTTT-------------------------------------------A---------CGATTTATTTTTAACAGAAAAGAAGCGTCGCATTTACGATGAGTACGGCAAGGATGGACTGGGTGAA
droBia1 scf7180000301754:2441807-2442264 - CTTCACCTTCCGCAACATTTTCGAGGGCACTCCCTTCCACAAGTTGTTCGGTAAAGG------CCGCA----------AGGAGTTGCAACTGT-----TTGGTTA------------------------CTTTGG--TTTCGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------CTGTT-CTCGTTT--CG----TA----CTT--TTCGCAACTAAATGCTGTTTTT--TCAGTGATGGG-AAGACCATGTTTTT-G-------------------------------------------------------GGCTTCAAAGCAAGAAAAACTGAAAGCTACCTTACATATATATGTATATTATATATATTAAAATCCTGTAACTTGAAATAGGAAAATTAAGGACCCTTCCCATCACTGGTTCCATGTTAGGTCTAAGCTA--------------------------------------------------ACTCC-CC---------------GCTGCTCGAGCGTTAATTACTAAC----------------------------------C--------ACATACAATGTTTCTG--ATTTC-CT----TGACTCATCCTCTTTT-------------------------------------------C---------CGACTTGTCTCCCACAGAGAAGAAGCGTCGCATCTACGACGAGTACGGCAAGGATGGACTGGGCGAA
droTak1 scf7180000415795:461721-461908 + CTTCACCTTCCGCAACATTTTCGAGGGCACTCCGTTCCACAAGTTGTTCGGTAAAGG------CCAGAGGC-----A-----GTTGCAATTGT-----TTGGTTA------------------------CTTTCG--TTTTGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------CTGTT-CTTGTTC--CG----TT----CTTTTTTCGCAACTAAATGCTGTTCTT-TGCAGTGATGGG-AAG--CTTCTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491214:103633-103834 - CTTCACCTTCCGCAACATTTTCGAGGGCACTCCGTTCCACAAGCTGTTCGGTAAAGC------C-AGAGGC-----AGAAGCGTTGCAATTGT-----TGCGTTA------------------------TTTTGG-TTTTTGCTGACTGACA-------TCT-TGGCGCACGTCGTTC-------------------------------------------------------------------------------TTGTTTTTTGTTC--CA----TA----CTT-TAATGCAACTAAACGCTGTTTCT-TGCCGTGATGGG-AAG--CATC--TAA-ATATACATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779949:9113-9292 - CTTCACCTTCCGTAACTTTTTCGAGGGCACTCCTTTTCACAAGTTGTTCGGTAAAGC------C-TGAAGC-----AGAAGCGTTGCAATTGT-----TTCGTTA------------------------TTATGG--TTTTGCTGACTGACA-------TCC-TGGCGCACGTCGTTC-------------------------------------------------------------------------------TTGTT-TTTGTTT--CA----TA----CTT--TTCGCAACTAAACGCCGTTCCT-TGCAGTGATGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453948:1340034-1340213 - CTTCACCTTCCGCAACATTTTTGAGGGAACGCCCTTCCACAAGCTGTTCGGTAAAGC------C-AGAGGC-----AAAAGCGTTGCAATTGT-----TTGGTTA------------------------TTTTGG-TTTTTGCTGACTGACA-------TCC-TCGCGCACGTCGTT--------------------------------------------------------------------------------CTGTT-TCTGTTC--TA----TA----CTT--TCTGCAACTAAACGCTGTCCCT-TGCAGTGATGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302682:1278279-1278631 + CTTCACCTTCCGCAATCTATTCGAGGGCACGCCGTTTCACAAGCTGTTTGGTAAAGC------C-AGAGGC-----AGAAGCGTTGCAATTGTTCTTTTTGGTTA------------------------CTTTTGTTTTTTGCTGACTGACTGACAAGGTCC-TGGCGCACGGCATT--------------------------------------------------------------------------------TTGTTGTTTGTTC--CC----TTTCTGTTT-TTCTGCAACTAAATGCTGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGGCTATATTTTAGGCCTATTCTA--------------------------------------------------ACCCCTCA---------------GCAGCTCGAGTGTTTCTTACTAATCTAAACGGATGACATTGCTGGCCCATCAACTAATGCTTG---------------------------------------------GTATG-------------------------------------------CT---------TTC---TGTTCCACAGAGAAGAAGCGTCGCATCTACGATGAGTACGGCAAGGATGGACTGAGTGAT
droAna3 scaffold_13266:4181772-4182082 + CTTCACCTTCCGTAACCTGTTCGAGGGCACACCGTTTCACAAAGTCTTCGGTAAAGC------C-AGAAGC-----TGACGCGTTGCATTGTT-----TTGGTTA------------------------CTTTGT--TCTTGCTGACTGACC-------CCTAAGGCGCACGACGTTC-------------------------------------------------------------------------------TT-------GTTC--TATTATTT----GTG--TCTGCAACTAAACGCCGTTTTA--------------------------------TT-------------------------------------------------------TGA---------------------------------------------------------------------------------------------------------------------AACCTAATCCCAGCAGCTGTTCCTTTACTAACTGATATGATAGTG---ATTTGTTT-----------------------------------------CC-----------------------------------------------------------------------------GTGCTAATCGAAGGCT-ATCTGTTCT---------------------------------------------------AATCCACAGAGAAGAAACGTCGTATCTACGATGAGTACGGCAAGGATGGCTTGGGAGAC
droBip1 scf7180000396427:2622002-2622312 + GTTCACCTTCCGTAACCTCTTCGAGGGCACACCGTTTCACAAGGTCTTCGGTAAAGC------C-AGAAGC-----TGACGCGTTGCA-TTGT-----TTGGTTA------------------------CTTTGT--TCTTGCTGACTGACC-------CCTAAGGCGCACGACGTTC-------------------------------------------------------------------------------TT-------GTTC--TATTATTT----GTG--TCTGCAACTAAACGCCCTTCTT----AGTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTAATCCCGGCAGCTGTTC-TATACTAACAGTAGACACAGTACCTAA-TACTT-----------------------------------------CC-----------------------------------------------------------------------------CAACTAATCGAAGACT-ATCCTTT--------------------------------------C-------------CGATCCGCAGAGAAGAAACGTCGTATCTACGATGAGTACGGCAAGGATGGACTGGGAGAC
dp5 3:4456200-4456541 - GTTTACCTTCCGTAACATCTTTGAGGGCACACCATTTCACAAACTCTTTGGTAAAGC------C-ACGC----------GACGTTGCAAGTTT-----TTGGTTCATTCTTTCGTTCGTTCGTTCGTTCTT---T-TCTTTGCCGACTGACA-------GCCTTGCCGCACGACGTT--------------------------------------------------------------------------------TTT--------TC--TG----------CTTTTGTTGCAACTAA-CGTTA------------------------------------------------------------------------------------------GGCCTGAAAGCA-------------------------------------------------------------------------------------------------------------------CTAACCCA--------------------------------------------------AAT---------------GCAGCCCGAATTGTTAT-ACA------------------------------AACTAATCCCGAGAAAGCATTT-------------------------------------------TAGTTCGACTCCATCTTACGTTCCTCTGTTCGTGTTTTTCCTTCC------------GTTTTCGCAGAGAAGAAACGTCGCATCTATGACGAGTACGGCAAGGATGGTCTGGGCGAA
droPer2 scaffold_2:4643907-4644244 - GTTTACCTTCCGTAACTTCTTTGAGGGCACACCATTTCACAAACTCTTTGGTAAAGC------C-ACGC----------GATGTTGCAAGTTT-----TTGGTTCATTCTTTCGTTC----GTTCGTTCTT---T-TCTTTGCCGACTGACA-------GCCTTGCCGCACGACGTT---------------------------------------------------------------------------------T-------GTTC--TG----------CTTTTGTTGCAACTAA-CGTTA------------------------------------------------------------------------------------------GGCCTGAAAGCA-------------------------------------------------------------------------------------------------------------------CTAACCCA--------------------------------------------------AAT---------------GCAGCCCGAATTGTTAT-ACA------------------------------AACTAATCCCGAGAAAGCATTT-------------------------------------------TAGTTCGACTCCATCTTACGTTCCTCTGTTCGTGTTTTTCCTTCC------------GTTTTCGCAGAGAAGAAACGTCGCATCTATGACGAGTACGGCAAGGATGGTCTGGGCGAA
droWil2 scf2_1100000004822:107131-107559 - GTTTACCTTCCGTAACTTATTCGAGGGTACACCATTTCATAAACTTTTTGGTAAAAAGCAAGGCAAAAAAA-----AAAAATGTTGCTAATTT-----TTGTTTT------------------------TGTTTG--AGTTTTTTA-------------------TCGTATCTTTTTTTTTTGCTCGCCCTCACGTTGGGCGCCAAATTGGTTGTTTAACCCAAGCTTTGACGTTTGTGTTTTTTGAGATTGTTTTTTTTTT-TTTGTTT--AT----TT----TTG--TC-GGCACTAAATGCAAAA--------ATAAAGCAGAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGAGGCTTTAGCTA--------------------------------------------------ACCCC-TTTCATCCAAAGCGACAGCAGC---AATGTTTC-CACTAATCT---------------------------------CTGAGAAATAATTT-ATACATCAGTGAT----T-G-------------TAAATTAACCCTTT--------------------------------------CCGTTTCTGACTT-ATTTACACAGAGAAAAAACGTCGCATTTACGATGAGTATGGCAAGGATGGACTTGGTGAT
droVir3 scaffold_12875:6945751-6945839 + GTTTACCTTCCGCAACTTGTTCGAGGGCACGCCGTTTCACAAACTGTTTGGTAAAAAGAGTCTCGAGACGC-----ATAAATTTTGTTTTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:13278045-13278101 - TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAGAGAAGAAACGCCGCATTTACGATGAGTACGGCAAGGATGGATTAGGGGAC
droGri2 scaffold_15112:1817204-1817264 + TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTACAGAGAAGAAACGGCGCATTTACGATGAGTACGGCAAGGATGGGCTGGGCGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTTCACGTTCCGCAACATTTTCGAGGGCACTCCGTTCCACAAGATGTTCGGTAAAGG------CGAGAGGC-----TAAAGCGTTGCAATTGT-----TTCGTTA------------------------CT--------ATGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------TTGTT-TTCGTTC--CA----TT----CAA--TCTGCAACTAAACGCTGTTTTTGTACAGTGATGGGGGAG--CATTCATAA-GCGTTCATA-------------------------------------------------------------------------------------------------------------------------------------------ACCTTTCCCACCACTGTTTCCATGCTAAGTCTAAGCTA--------------------------------------------------ATCC--TC---------------GCAGCTCGAGCGTTTATTACTAAT----------------------------------T--------GCATTT-ACCTTCCTGTTATTTTGC-ATCTCAACTTACCATTTACT-------------------------------------------CC---------TAT---TTCTTCACAGAGAAAAAGCGCCGCATATACGATGAGTATGGCAAAGATGGACTGGGCGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATGGCAAAGATGGACTGGGCG..2611.00100000000000010000
CTTCACGTTCCGCAACATTTTCGAGGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGCAAAGATGGACTGGGC...2311.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGATGGACTGGGC...1811.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATGGCAAAGATGGACTGGG....2411.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAGTATGGCAAAGATGGACTGGG....2711.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCAAAGATGGACTGGGG...2020.50110000000000000000
droSec2
CTTCACGTTCCGCAACATTTTCGAGGGCACTCCGTTCCACAAGATGTTCGGTAAAGG------CGAGAGGC-----TAAAGCGTTGCAATTGT-----TTTGTTA------------------------CT--------ATGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------TTGTT-TTCGTTC--CA----TT----CAA--TCTGCAACTAAACGCTGTTTTTGTACAGTGATGGGGGAG--CATTCATAA-GCGTTCATA-------------------------------------------------------------------------------------------------------------------------------------------ACCTTTCCCACCACTGTTTCCATG-----------CTA--------------------------------------------------ATCC--TC---------------GCAGTTCGAGCGTTTATTACTAAT----------------------------------T--------GCATTT-ACCTTCCTCTTATTTCGC-ATTCCAACTTACCATTTACT-------------------------------------------CC---------CAT---TTCTTCACAGAGAAAAAGCGCCGCATATACGATGAGTATGGCAAAGATGGACTGGGCGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCAAAGATGGACTGGGC...2013.0030120
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGCGCCGCATATACGATGA.........................2311.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGCGCCGCATATACGATGAGT.......................2511.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCGCCGCATATACGATGAGT.......................2411.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGCAAAGATGGACTGGGC...2311.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCAAAGATGGACTGGC....1911.0010010
dm3
CTTCACGTTTCGCAACATTTTCGAGGGCACTCCGTTCCACAAGATGTTCGGTAAAGG------CGAGAGGC----CAAAAGCGTTGCAATTGT-----TTCGTTA------------------------CTTTGG--TTTTGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------TTGTTTTTCGTTCGTCA----TT----CTA--TCTGCAACTAAACGCTGTTTTCGTACAGTGATGGGGGAG--CATTCATAA-GCATTCATA-------------------------------------------------------------------------------------------------------------------------------------------ACCTTTCCCACCACTGTTTCCATGCTAAGTCTAAGCTA--------------------------------------------------ATCC--TC---------------GCAGCTCGAGCGTTTATTACTAAT------------------------------TAATT--------GCATTT-ACTTTCCTGTTGTTTCAC-A-CCCAACTTACCATGTACT-------------------------------------------CC---------CAT---TTCTTAACAGAGAAAAAGCGTCGCATATACGATGAGTATGGCAAAGATGGACTGGGCGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................GTACAGTGATGGGGGAG--CATTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.00100000000000000000000000000000000000000000000000000000000009100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GTACAGTGATGGGGGAG--CAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2019.0090000000000000000000000000000000000000000000000000000000006300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGATGAGTATGGCAAAGATGGAC........2715.0050000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010020000
.......................................................................................................................................................................................................................................................................................................................GTACAGTGATGGGGGAG--CATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000003110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................ACAGTGATGGGGGAG--CATTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGCGTCGCATATACGATGAGTATGG...................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GTACAGTGATGGGGGAG--CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGTATGGCAAAGATGGACTG......2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGTATGGCAAAGATGGACTA......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGTATGGCAAAGATGGACT.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................TGG--TTTTGCTGACTGACA-------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGATGAGTATGGCAAAGAT............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AAAGCGTTGCAATTGT-----T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAAGCGTCGCATAT................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCGTTTATTACTAAT------------------------------TGC................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GCTGTTTTCGTACAGTGATGGGGGAG--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCATATACGATGAGTATGGCAAA...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAAAGATGGACTGGG....2011.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCAAAGATGGACTGGG....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAAAGATGGACTGGGCGAT2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAAAGATGGACTGGGCGA.2311.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGCAACATTTTCGAGGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATGGCAAAGATGGACT.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATATACGATGAGTATGGCA.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATGGCAAAGATGGACTGGGC...2511.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCAAAGATGGACTGGGC...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................ACAGTGATGGGGGAG--CATTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TGTTTTTCGTTCGTCA----TT----CTA--TCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................ACAGTGATGGGGGAG--CATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTTTCCATGCTAAGTCTAAGCTA--------------------------------------------------................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATATACGATGAGTATGGCAAAGATG...........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CTGTTTTCGTACAGTGATGGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATACGATGAGTATGG...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCATATACGATGAGTATGGCA.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAAAGATGGACTGGGC...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGCGTCGCATATACGATGA.........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGATGAGTATGGCAAAG..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATACGATGAGTATG....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGTATGGCAAAGATG...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................GTACAGTGATGGGGGAG--CATTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATGGCAAAGATGGACTA......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TACAGTGATGGGGGAG--CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCGTCGCATATACGATGAGTATGGC..................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCAC-A-CCCAACTTACCATGTAC.........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GGC----CAAAAGCGTTGCAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTTCACCTTCCGCAACATTTTCGAGGGCACTCCGTTCCACAAGTTGTTCGGTAAAGC------CGAAAGGCAAAGCAAAGGCGTTGCAATTGT-----TTCGTTA------------------------CTTTGG--TTTTGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------CTGTT-TTTGTTC--CA----TT----CAA--CCTGCAACTAAACGCTGTTTTTGCACAGTGATGGG-GAG--CATTCATAAAGTGT------------------------------------------------------------------------------------------------------------------------------------------------ACCTTTCCCACCACTATTTCCATGCTAGGTTTAAGCTA--------------------------------------------------ATCC--TC---------------GCAGCTCGAGCGTTTATTACTAAT----------------------------------T--------TCACTT-GCCCTCCTGATATTTC-CG----CCACTTACCCTGTACT-------------------------------------------CT---------TAC---ATCTCCACAGAGAAAAAACGCCGCATATATGATGAGTATGGCAAGGATGGACTAGGCGATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGATGAGTATGGCAAGGATG...........2311.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATGGCAAGGATGGACTAGGCG..2611.0011000000
.................................................................................................................................................................................................................................................................................................................GTTTTTGCACAGTGATGGG-GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
droYak3
CTTCACCTTCCGCAACATTTTCGAGGGCACTCCGTTCCACAAGCTGTTCGGTAAAGC------CGAGAGGC-----AGAAGTGTTGCAATCGT-----TTTGTTT------------------------ATTTGG--TTTTGCTGACTGACA-------ACC-TGGCGCACGTTGTT--------------------------------------------------------------------------------CTGTTTTTTGTTC--CA----TT----CTA--TCTGCAACTAAGCGCTGTTTTTGCACAGTGATGGG-GAG--CATTCATAA-------ATA-----------------------------------------------------------------------------------------------------------------------------------------GTACCTTTCCCCCCACTGTTTCCATGCTAGGTTTAAGCTA--------------------------------------------------ATCC--TC---------------GCAGCTCGAGCGTTTACTACTAAT----------------------------------T--------CAATTT-ATCCTCCTGTTAT----C-G-CCCCACTTACGCAGTACT-------------------------------------------CT---------TAT---TTCTTCACAGAGAAAAAGCGCCGCATATACGATGAGTATGGCAAAGATGGACTGGGTGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCGCCGCATATACGATGAGTAT.....................2611.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCGCCGCATATACGATGAG........................2311.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATGGCAAAGATGGACTGGGT...2411.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGCGCCGCATATACGATGAGTAT.....................2811.00100000010000
droEug1
CTTCACCTTCCGCAACATTTTCGAGGGCACACCGTTCCACAAGATGTTCGGTAAAGC------C-AGAAGC-----AGAAGCGTTGCAATTGT-----TTGGTTA------------------------TTTTGG--TTTTGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------TTGTT-TTTGTTC--CG----TA----CATTTTTTGCAACTAATCGCTGTTCCT-TACAGTGATGGG-AAA--CATATATAT---ATATATATATATATATATATATATATATGTATTAACTGGCTTTTAACCTGCCTAGGTC-------A------------------------------------------ATAATAA--------------------------TAAGAACCTATCCCATCACTGATTCCTTGTTAAATCTAAGCTA--------------------------------------------------ACCCC-CT---------------GCAGCTCCAGCGTTAGTTACTAAC----------------------------------T--------AAATGAAGTTTTTTTACAATTTT-TG----TGACTTATCTCATTTT-------------------------------------------A---------CGATTTATTTTTAACAGAAAAGAAGCGTCGCATTTACGATGAGTACGGCAAGGATGGACTGGGTGAASizeHit CountTotal NormTotal
No Reads
droBia1
CTTCACCTTCCGCAACATTTTCGAGGGCACTCCCTTCCACAAGTTGTTCGGTAAAGG------CCGCA----------AGGAGTTGCAACTGT-----TTGGTTA------------------------CTTTGG--TTTCGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------CTGTT-CTCGTTT--CG----TA----CTT--TTCGCAACTAAATGCTGTTTTT--TCAGTGATGGG-AAGACCATGTTTTT-G-------------------------------------------------------GGCTTCAAAGCAAGAAAAACTGAAAGCTACCTTACATATATATGTATATTATATATATTAAAATCCTGTAACTTGAAATAGGAAAATTAAGGACCCTTCCCATCACTGGTTCCATGTTAGGTCTAAGCTA--------------------------------------------------ACTCC-CC---------------GCTGCTCGAGCGTTAATTACTAAC----------------------------------C--------ACATACAATGTTTCTG--ATTTC-CT----TGACTCATCCTCTTTT-------------------------------------------C---------CGACTTGTCTCCCACAGAGAAGAAGCGTCGCATCTACGACGAGTACGGCAAGGATGGACTGGGCGAASizeHit CountTotal NormTotal
No Reads
droTak1
CTTCACCTTCCGCAACATTTTCGAGGGCACTCCGTTCCACAAGTTGTTCGGTAAAGG------CCAGAGGC-----A-----GTTGCAATTGT-----TTGGTTA------------------------CTTTCG--TTTTGCTGACTGACA-------TCC-TGGCGCACGTCGTT--------------------------------------------------------------------------------CTGTT-CTTGTTC--CG----TT----CTTTTTTCGCAACTAAATGCTGTTCTT-TGCAGTGATGGG-AAG--CTTCTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CTTCACCTTCCGCAACATTTTCGAGGGCACTCCGTTCCACAAGCTGTTCGGTAAAGC------C-AGAGGC-----AGAAGCGTTGCAATTGT-----TGCGTTA------------------------TTTTGG-TTTTTGCTGACTGACA-------TCT-TGGCGCACGTCGTTC-------------------------------------------------------------------------------TTGTTTTTTGTTC--CA----TA----CTT-TAATGCAACTAAACGCTGTTTCT-TGCCGTGATGGG-AAG--CATC--TAA-ATATACATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CTTCACCTTCCGTAACTTTTTCGAGGGCACTCCTTTTCACAAGTTGTTCGGTAAAGC------C-TGAAGC-----AGAAGCGTTGCAATTGT-----TTCGTTA------------------------TTATGG--TTTTGCTGACTGACA-------TCC-TGGCGCACGTCGTTC-------------------------------------------------------------------------------TTGTT-TTTGTTT--CA----TA----CTT--TTCGCAACTAAACGCCGTTCCT-TGCAGTGATGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CTTCACCTTCCGCAACATTTTTGAGGGAACGCCCTTCCACAAGCTGTTCGGTAAAGC------C-AGAGGC-----AAAAGCGTTGCAATTGT-----TTGGTTA------------------------TTTTGG-TTTTTGCTGACTGACA-------TCC-TCGCGCACGTCGTT--------------------------------------------------------------------------------CTGTT-TCTGTTC--TA----TA----CTT--TCTGCAACTAAACGCTGTCCCT-TGCAGTGATGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTTCACCTTCCGCAATCTATTCGAGGGCACGCCGTTTCACAAGCTGTTTGGTAAAGC------C-AGAGGC-----AGAAGCGTTGCAATTGTTCTTTTTGGTTA------------------------CTTTTGTTTTTTGCTGACTGACTGACAAGGTCC-TGGCGCACGGCATT--------------------------------------------------------------------------------TTGTTGTTTGTTC--CC----TTTCTGTTT-TTCTGCAACTAAATGCTGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGGCTATATTTTAGGCCTATTCTA--------------------------------------------------ACCCCTCA---------------GCAGCTCGAGTGTTTCTTACTAATCTAAACGGATGACATTGCTGGCCCATCAACTAATGCTTG---------------------------------------------GTATG-------------------------------------------CT---------TTC---TGTTCCACAGAGAAGAAGCGTCGCATCTACGATGAGTACGGCAAGGATGGACTGAGTGATSizeHit CountTotal NormTotal
No Reads
droAna3
CTTCACCTTCCGTAACCTGTTCGAGGGCACACCGTTTCACAAAGTCTTCGGTAAAGC------C-AGAAGC-----TGACGCGTTGCATTGTT-----TTGGTTA------------------------CTTTGT--TCTTGCTGACTGACC-------CCTAAGGCGCACGACGTTC-------------------------------------------------------------------------------TT-------GTTC--TATTATTT----GTG--TCTGCAACTAAACGCCGTTTTA--------------------------------TT-------------------------------------------------------TGA---------------------------------------------------------------------------------------------------------------------AACCTAATCCCAGCAGCTGTTCCTTTACTAACTGATATGATAGTG---ATTTGTTT-----------------------------------------CC-----------------------------------------------------------------------------GTGCTAATCGAAGGCT-ATCTGTTCT---------------------------------------------------AATCCACAGAGAAGAAACGTCGTATCTACGATGAGTACGGCAAGGATGGCTTGGGAGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------------------------------------CC-----------------------------------------------------------------------------GTGCTAATCGAAGGCT-ATCTG..................................................................................................................2511.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTACGGCAAGGATGGCTTGGG....2411.001100000
.......TTCCGTAACCTGTTCGAGGGCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................CACACCGTTTCACAAAGTCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................TGTTCGAGGGCACACCGTTTCACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droBip1
GTTCACCTTCCGTAACCTCTTCGAGGGCACACCGTTTCACAAGGTCTTCGGTAAAGC------C-AGAAGC-----TGACGCGTTGCA-TTGT-----TTGGTTA------------------------CTTTGT--TCTTGCTGACTGACC-------CCTAAGGCGCACGACGTTC-------------------------------------------------------------------------------TT-------GTTC--TATTATTT----GTG--TCTGCAACTAAACGCCCTTCTT----AGTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTAATCCCGGCAGCTGTTC-TATACTAACAGTAGACACAGTACCTAA-TACTT-----------------------------------------CC-----------------------------------------------------------------------------CAACTAATCGAAGACT-ATCCTTT--------------------------------------C-------------CGATCCGCAGAGAAGAAACGTCGTATCTACGATGAGTACGGCAAGGATGGACTGGGAGACSizeHit CountTotal NormTotal
No Reads
dp5
GTTTACCTTCCGTAACATCTTTGAGGGCACACCATTTCACAAACTCTTTGGTAAAGC------C-ACGC----------GACGTTGCAAGTTT-----TTGGTTCATTCTTTCGTTCGTTCGTTCGTTCTT---T-TCTTTGCCGACTGACA-------GCCTTGCCGCACGACGTT--------------------------------------------------------------------------------TTT--------TC--TG----------CTTTTGTTGCAACTAA-CGTTA------------------------------------------------------------------------------------------GGCCTGAAAGCA-------------------------------------------------------------------------------------------------------------------CTAACCCA--------------------------------------------------AAT---------------GCAGCCCGAATTGTTAT-ACA------------------------------AACTAATCCCGAGAAAGCATTT-------------------------------------------TAGTTCGACTCCATCTTACGTTCCTCTGTTCGTGTTTTTCCTTCC------------GTTTTCGCAGAGAAGAAACGTCGCATCTATGACGAGTACGGCAAGGATGGTCTGGGCGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGCAAGGATGGTCTGGGC...2215.0050200002001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGCAAGGATGGTCTGG.....2012.0020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCAAGGATGGTCTGGG....1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCAAGGATGGTCTGGGC...2011.0011000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGTACGGCAAGGATGGTCTG......2411.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGCAAGGATGGTCTGGGC...2111.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGATGGTCTGGGC...1811.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGCAAGGATGGTCTGGG....2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATGACGAGTACGGCA.................1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGGCAAGGATGGTCTGGG....2211.0010100000000
droPer2
GTTTACCTTCCGTAACTTCTTTGAGGGCACACCATTTCACAAACTCTTTGGTAAAGC------C-ACGC----------GATGTTGCAAGTTT-----TTGGTTCATTCTTTCGTTC----GTTCGTTCTT---T-TCTTTGCCGACTGACA-------GCCTTGCCGCACGACGTT---------------------------------------------------------------------------------T-------GTTC--TG----------CTTTTGTTGCAACTAA-CGTTA------------------------------------------------------------------------------------------GGCCTGAAAGCA-------------------------------------------------------------------------------------------------------------------CTAACCCA--------------------------------------------------AAT---------------GCAGCCCGAATTGTTAT-ACA------------------------------AACTAATCCCGAGAAAGCATTT-------------------------------------------TAGTTCGACTCCATCTTACGTTCCTCTGTTCGTGTTTTTCCTTCC------------GTTTTCGCAGAGAAGAAACGTCGCATCTATGACGAGTACGGCAAGGATGGTCTGGGCGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGCAAGGATGGTCTGGGC...2213.003000003
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGCAAGGATGGTCTG......1912.002010001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGCAAGGATGGTCTGG.....2012.002000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGTACGGCAAGGATG...........1911.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGGCAAGGATGGTCTGGGC...2311.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGGCAAGGATGGTCT.......1911.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGACGAGTACGGCAAGGATGGTCTG......2811.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGATGGTCTGGGC...1811.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGAAACGTCGCATCTATGACGAGT.......................2811.001000001
droWil2
GTTTACCTTCCGTAACTTATTCGAGGGTACACCATTTCATAAACTTTTTGGTAAAAAGCAAGGCAAAAAAA-----AAAAATGTTGCTAATTT-----TTGTTTT------------------------TGTTTG--AGTTTTTTA-------------------TCGTATCTTTTTTTTTTGCTCGCCCTCACGTTGGGCGCCAAATTGGTTGTTTAACCCAAGCTTTGACGTTTGTGTTTTTTGAGATTGTTTTTTTTTT-TTTGTTT--AT----TT----TTG--TC-GGCACTAAATGCAAAA--------ATAAAGCAGAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGAGGCTTTAGCTA--------------------------------------------------ACCCC-TTTCATCCAAAGCGACAGCAGC---AATGTTTC-CACTAATCT---------------------------------CTGAGAAATAATTT-ATACATCAGTGAT----T-G-------------TAAATTAACCCTTT--------------------------------------CCGTTTCTGACTT-ATTTACACAGAGAAAAAACGTCGCATTTACGATGAGTATGGCAAGGATGGACTTGGTGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCAAGGATGGACTTGGT...2011.00100100
..............................................................................................................................................................................................................................................................................................G--TC-GGCACTAAATGCAAAA--------ATAAAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000
droVir3
GTTTACCTTCCGCAACTTGTTCGAGGGCACGCCGTTTCACAAACTGTTTGGTAAAAAGAGTCTCGAGACGC-----ATAAATTTTGTTTTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................GTTCGAGGGCACGCCGTTTCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000010000000000000000000000000000000000000000000
droMoj3
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAGAGAAGAAACGCCGCATTTACGATGAGTACGGCAAGGATGGATTAGGGGACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTACAGAGAAGAAACGGCGCATTTACGATGAGTACGGCAAGGATGGGCTGGGCGATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAAGGATGGGCTGGGC...1911.00101
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGATGGGCTGGGCG..1811.00110

Generated: 05/19/2015 at 02:14 AM