ID:

dsi_11835

 Coordinate:

3r:469176-469325 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTCCGTCGCTCGAGGAAATGCTTTCAAGTTTTTGTGCAGATCCATCACGGATGCCGTGCCAGGAATTAGCTCAGCTCACGATGACACCTGCCCACTTGAACAGCTCCTACCGGGGGTTAATGGTTCATAGATGAGGCCATCAATTCCCGACACCAGATTATCATGCTTTCATACTCAATATGGTTTTATTTGTCTTTCAGCTAATGAAATTGGACACATCCGAAGACCTCGCCCGATGTGCGTGGGAGCT
**************************************************...............((.....((..((.(((((.(((........((((.(((......((((((((.((((((((....)))).)))).))))))))...............)))))))..........))).))))))).))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 M024
male body		 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..................................................................................................................................................................................................................TGGACACATCCGAAGACCTCGCCCGA.............. 26 0 1 3.00 3 2 0 1 0 0 0 0 0
............................................................................................................................................................................................................TGAAATTGGACACATCCGAAGACCTC.................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................CGGGAAGTAGCTCAGCTC............................................................................................................................................................................. 18 2 6 1.00 6 0 4 0 0 0 2 0 0
..............................................................................................................................................................................................................AAATTGGACACATCCGAAGACCTCGCCC................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................CGGGAATTAGCTCAGC............................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................AAGACCTCGCGCGAT............. 15 1 5 0.20 1 0 0 0 1 0 0 0 0
..........................................................CCAGGAATTAGCTCT................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 1 0 0 0 0
GTCCGACGATCGAGGAA......................................................................................................................................................................................................................................... 17 2 8 0.13 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................ATCGCAAGACCTCGCGCGA.............. 19 3 9 0.11 1 0 0 0 0 1 0 0 0
...........................................................CGGGAAATAGCTCAGCTC............................................................................................................................................................................. 18 2 10 0.10 1 0 1 0 0 0 0 0 0
.TCAGTAGCTCGAGGAAAAG...................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 2 0 0 0
.............................................................................................................................................................................................................................CAAGACCTCGCGCGAT............. 16 2 18 0.06 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................CCTCGGAAGACCTCGACC................ 18 3 20 0.05 1 0 0 0 1 0 0 0 0
.................................................GATGCCGCGCTAGGAA......................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................AGACCTCGCGCGATT............ 15 2 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

CAGGCAGCGAGCTCCTTTACGAAAGTTCAAAAACACGTCTAGGTAGTGCCTACGGCACGGTCCTTAATCGAGTCGAGTGCTACTGTGGACGGGTGAACTTGTCGAGGATGGCCCCCAATTACCAAGTATCTACTCCGGTAGTTAAGGGCTGTGGTCTAATAGTACGAAAGTATGAGTTATACCAAAATAAACAGAAAGTCGATTACTTTAACCTGTGTAGGCTTCTGGAGCGGGCTACACGCACCCTCGA
**************************************************...............((.....((..((.(((((.(((........((((.(((......((((((((.((((((((....)))).)))).))))))))...............)))))))..........))).))))))).))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 O001
Testis
 SRR1275487
Male larvae		 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR1275485
Male prepupae		 SRR1275483
Male prepupae
.....................................................................................................................................TCCGGGAGTGATGGGCTG................................................................................................... 18 3 20 1233.95 24679 16017 7213 1364 48 6 12 0 0 8 2 6 1 2 0
.....................................................................................................................................TCCGGTAGTGATGGGCTG................................................................................................... 18 2 1 114.00 114 75 38 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................TCCGGGAGTTATGGGCTG................................................................................................... 18 2 1 109.00 109 51 51 6 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................CTCCGGGAGTGATGGGCTG................................................................................................... 19 3 9 15.00 135 90 43 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................TCCGGGAGTGAAGGGCTG................................................................................................... 18 2 1 14.00 14 10 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCGGGAGTGATGGGCTGTG................................................................................................. 20 3 2 14.00 28 12 3 13 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCGGGAGTTATGGGCTGGG................................................................................................. 20 3 1 8.00 8 0 0 8 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCGGCAGTGATGGGCTG................................................................................................... 18 3 12 5.08 61 38 19 3 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................TTCCGGGAGTTATGGGCTG................................................................................................... 19 3 11 3.18 35 13 7 14 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................CCGGGAGTGATGGGCTGTG................................................................................................. 19 3 6 3.00 18 7 0 10 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................TTCCGGTAGTGATGGGCTG................................................................................................... 19 3 10 2.90 29 15 8 3 0 0 0 2 0 0 1 0 0 0 0
.....................................................................................................................................TCCGGGAGTGATGGGCTGT.................................................................................................. 19 3 5 2.80 14 2 3 3 0 5 0 0 0 0 0 0 0 0 1
....................................................................................................................................TTCCGGGAGTTATGGGCT.................................................................................................... 18 3 20 2.05 41 26 15 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCGGTAGTGATGGGCTGGG................................................................................................. 20 3 3 2.00 6 0 0 5 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................CCGGGAGTGATGGGCTGTGG................................................................................................ 20 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CCGGGAGTTATGGGCTGGG................................................................................................. 19 3 13 0.92 12 8 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCGGGAGTTATGGGCTGG.................................................................................................. 19 3 8 0.75 6 2 1 1 0 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................TCCGGAAGTGATGGGCTG................................................................................................... 18 3 19 0.68 13 7 5 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................CCGGTAGTGATGGGCTGTGA................................................................................................ 20 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CCCGGTAGTGATGGGCTG................................................................................................... 18 3 19 0.63 12 9 3 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTCCGGGAGTGAAGGGCTG................................................................................................... 19 3 14 0.57 8 3 0 5 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................CTACTACGGTAGTTACGGGCCG................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................CTCCGGGAGTTATGGGCT.................................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCGGGAGTTAAGGGCTGGGA................................................................................................ 21 3 4 0.50 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CCGGTAGTGATGGGCTGGG................................................................................................. 19 3 10 0.40 4 1 0 3 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CGGGAGTTATGGGCTGGG................................................................................................. 18 3 20 0.35 7 0 6 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................CCGGTAGTGATGGGCTGGGG................................................................................................ 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CCGGGAGTTATGGGCTGGGG................................................................................................ 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCGGGAGTTAGGGGCTG................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCTGTGCAGGCCTCTGGAG.................... 19 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................CGGTAGTGATGGGCTGGG................................................................................................. 18 3 20 0.25 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CCGGGAGTGATGGGCTGT.................................................................................................. 18 3 17 0.24 4 1 1 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GCCGGGAGTTATGGGCTG................................................................................................... 18 3 20 0.20 4 2 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AAATAAACAGCAAGTCGA................................................ 18 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................GGTAGTTACGGGCTGTCGC............................................................................................... 19 3 16 0.19 3 0 0 0 0 0 0 0 0 0 0 0 3 0 0
.....................................................................................................................................TCCGGGAGTTATGGGCTGTGA................................................................................................ 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCGGGAGTGAAGGGCTGGG................................................................................................. 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCGGTAGTGATGGGCTGG.................................................................................................. 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CCGGTAGTGATGGGCTGG.................................................................................................. 18 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGGACGGCCGAACTTGT.................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................CCAGGATGGCCCTCA..................................................................................................................................... 15 2 20 0.10 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0
......................................................................................GGATGGGTGAACTTGGC................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GCTCCTTGAGCGAGCTACA........... 19 3 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................CTCGAGGATGGCCCCA...................................................................................................................................... 16 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................TAGTGGCTACGGCGCG............................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................CCGGTAGTTAAGGGGA.................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................GTCCGGGAGTTATGGGCT.................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCGGGAGTAATGGGCTG................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:469126-469375 + dsi_11835 GTCCGTCGCTCGAGGAAATGCTTTCAAGTTTTTGT-GC---AGATCCATCACGGAT--GCC--------GTGCC------AGGAATTA---GCTCAGCTC------------------A-----------------------------------CGATGACACCTGCC-----CAC-TTGA---------------------------ACAGCTCCT-------------------ACCGGGGGTTAATGGTTCATAGATGAGGCCA--------------TCAATTCCCGACACCA-----GA----TT---ATCATGC-------TTTC---------------------ATACTCAATATGG-T--TT-------T-----ATTTGTC-TTTCAGCTAATGAAATTGGACACATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTGGGAGCT----------------
droSec2 scaffold_6:635109-635358 + GTCCGTCGCTTGAGGAAATGCTTTCAAGTTTTTGT-GC---AGATCCATCACGGAT--GCC--------GTGCC------AGGAATTA---GCTCAGCTC------------------A-----------------------------------CGATGACACCTGCC-----CAC-TTGA---------------------------ACAGCTCCT-------------------ACCGGGGGTTAATGGTTCATAGATGAGGCCA--------------TCAATTCCCGACACCA-----GA----TT---ATCATGC-------TTTT---------------------ATACTCAATATGG-T--TT-------T-----ATTTGTC-TTTCAGCTAATGAAATTGGACACATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTGGGAGCT----------------
dm3 chr3R:522713-522962 + GTCCGTCGATTGAGGAAATGCTTTCAAGTTTTTGT-GC---AGATCCATCACGGAT--GCC--------GTGCC------AGGAATTA---GCTCTGCTC------------------A-----------------------------------TGATGACACCTGCC-----CAC-TTGA---------------------------ACAGCTCCT-------------------ACCAGGGGTTAATGGTTCATAGATGAGGCCA--------------TCAATTTCCGACACCA-----GA----TT---ATCATGC-------TTTT---------------------ATACTCAATATGG-T--TT-------T-----ATTTGTC-TTTCAGCTAATGAAATTGGACACATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTGGGTGCT----------------
droEre2 scaffold_4770:833220-833467 + GTCCGTCGGTTGAGGAAATGCTTGTAAGTTTTTGT-GC---AGATCCATCACGGAT--GCC--------GTGCC------AGGAATTG---GCTCAGCTC------------------A-----------------------------------TGATGACACCTGCC-----CAC-TTGA---------------------------AAAGCTCGT-------------------ACTGGGGGTTAACGGTTCATAGATGAGGCCT--------------CCAATTTCCGACACCA-----CA----TT---ATCATGG-------TTTT---------------------ATACTCAATATGA-T--TT-------TATTTCTTTCAGC-TTTCAGCTAATGAAATTGACTACATCCGAGGA---------------------CC---TC-------GCCCGATGT-------GCGT-----------------------
droYak3 3R:841514-841749 + CTGCGTCGTTTGAGGAAATGCTTGTAAGTTTTTGT-GC---AGATCCACCAAGG-----------------------------AATGA---GCTCAGCTA------------------A-----------------------------------TGGTGACACCTGCC-----AAC-TTTA---------------------------AATGCCCGT-------------------ACC-G-GGGTAATGGTTCATAGATGACGCCT--------------CCAATTTCAGACAGCA-----ATCTTGCTTTTATCTTGT-------TTTT---------------------ATACACAATATG----TTC-------C-----ATTTTTC-TTTCAGCTAATAAATTTGGCCACATCCGAAAA---------------------TC---TC-------TCCCGATGT-------GCGTGG---------------------
droEug1 scf7180000409759:463380-463641 + GTCCGCCGGTTGAGGAAATTCTTGCCAGTTTTTCT-CC---AGATCCTTCACGGAT--GCCAGA-AACTGTGCC------AGAAACTA---GCTTGGCAG------------------A-----------------------------------TGATGACACCTGCC-----CAC-TCAA---------------------------AAAGACA-C-------------------ACCAGGGGTTAATGGTTCCTAGATGAGGCCA----------GCTCTTACGTTCCGACAGCA-----CA----TT---AGAAAGCG------TTTT---------------------ATACTCAATCAGG-TGTAT-------C-----T-TTGTT-TTGCAGCTGATGAAATTGGACACCTCAAGAGA---------------------CC---CC-------GCCCGATGT-------CCGTGGGTGGT----------------
droBia1 scf7180000302411:244947-245201 + GTCTGCGAGTTGAGGAAATGCCTGCCAGTTTTTCT-GC---AGATCCTTCACGGAT--GCA--------CTGCC------AGAAACTA---GCTTAGCAG------------------A-----------------------------------CGATGCCACCTGCC-----CAC-TCGG---------------------------CGAGCTCCG-------------------ACC-GGGGTTAATGGTTCCTAGATGAGGCCA-----------CACTCGCATATCGACACCA-----TA----TC---AATGTGCG------ATGT---------------------ATACTAAGTGAGG-TGTTT-------C-----TTTTGTC-TTGCAGCTAATGAAATTGGACACCTCCAGCAA---------------------CC---CC-------GTTCGATGT-------GCGTGGGAGGT----------------
droTak1 scf7180000410507:6997-7242 + GTCTGCCAGTTGAGGAAATGCTCGAGAGTTCTTCT-GC---AGATCCTTCACGGAT--GCA--------GTGGC------TGAAACTA---GCTC------------------------------------------------------------------ACCTGCC-----CAC-TCAAC-----------------------TA-AGAGCTGAG-------------------AGC-GGGGTTAATGGTTTCCAGATGAGGCCA----------GCACTCGAATTCCGACACCA-----TA----TT---ATCGTGCG------TTTC---------------------GTACTAAACAAGG-TGTTT-------C-----TTTTGTT-TTGCAGCTAATGAAATTGGACACCTCCAGAAA---------------------CC---GC-------GCCCGATGC-------GCGTGGGTGGT----------------
droEle1 scf7180000491104:2279762-2280024 + GG----CAGTTGAGGAAATGCCTGCGAGTTTTTCT-GC---AGATCCTTCACGGAT--GCA--------GTGGC------AGAAACTA---GCTCATCAA------------------A-----------------------------------TGACGACACCTGCC-----CAC-TCAAC-----------------------TTTGTAGCTCTA-------------------GCATGGGGTTAATGGTTGCTGGATGAGGCCA----------GCGTCCAAATTCCGACACCA-----TG----CTCATAATATGCG------ATTT---------------------ATACTCAATAAGG-TGTAT-------C-----TTTTATA-TTTCAGCTAATGAAATCGGACACCTCCAAAGA---------------------CC---CC----GCCGCCCGATGT-------GCGTGGGTGGT----------------
droRho1 scf7180000778895:23085-23347 + GTCTGTCAGTTGAGGAAATGCTTGCCGGTTTTTCT-GT---AGATCCTTCACGGAT--GCA--------GTGCC------GCCAACTA---GCTCAGCAC------------------A-----------------------------------TGATGACACCTGCC-----CAC-TCGTC-----------------------TTGGAAGTTT-T-------------------AGCAGGGGTTAATGGTTCCTAGATGAGGCCA----------GCTCTCAGGTTCCGACACCG-----TA----TTCATAATATGCC------TTTT---------------------ATACTCAATAAGG-TGTAT-------C-----TTTTATT-TTGCAGCTAATGAAATCGGACACCTCCAAAGA---------------------CC---CC-------GCCCGATGC-------GCGTGGGTGGT----------------
droFic1 scf7180000453903:122828-123050 + G-----------CGGAAATGCCTGCCAGCTCTCCA-GT---AGATCCTTTACGGAT--GCA---------GGCC------AGAAACGA---GTTCGGCCT------------------A------------------------------------GATGGCACCTGCC-TGCCCAC-CAGTT------------------------TGAAGGCTTGA-------------------AG-GGGGGTCA---------------TTCCA-----------------GTC-----TATCG-----CA----TC---TGTAAGCG------CTCC---------------------ATACTCATCCGGG-TGTAT-------C-----TCTTGTC-TTGCAGCTAATGAAATTGGACACCTCCCAGGC---------------------CC---CC-------GCCCGAGGT-------GCGTGGGTGGT----------------
droKik1 scf7180000302634:210400-210649 + GG----CAGTTGAGGAAATGCCAGAGACT-TTTCC-AC---AGATCCTTCACGGATCTGCC--------ATGCC------AGAAACTG---GCTCAGCTA----------------A-A-----------------------------------CACCGACACCTGTC-----CAT-GGG--------------------------------------------------------GTC-GGGGTTGATGGCTGCCAGGTGAATCCG----------GCACTCAAGTTCCAACAGCT-----TTT---TTAATAATATGCG------TT-C------------------AAGGTACTCAATGATG-TGTTT-------C-----TGTTATC-TTGCAGCTAATGAAATCGGACACCTCCGTGGC---------------------CC---CC-------GCCCGATGT-------GCGTGGGTGGT----------------
droAna3 scaffold_13340:22747714-22748012 + GTCTGGCAGTTGAGGAAATGCCTGAGAGTTTTT---GT---AGATCCTTCACGGAT--GTGAGGCTAGAATGCC------AGTAACTG---GCTCATCAT--CTCATCTTCGTTCGAAACGGTTCCACTAACCGAC---------CGGCCTA---ACCGACACCTGCC-----CAC-TCGTC----------------------------TGC---G-------------------GCT-GGGGTTAATGGCTTATAGATGAGGCTA----------ACAGA--CATTCTGACACGA-----TA----TTAATAATATGCG------T-TT---------------------AAACTTAAAAAGG-TGTATCTCTTCTC-T---TTATTTC-TTGCAGCTAATGAAATCGGACACCTCCGA--------------------------------------------TGTGCGTGGTGCGTGGGTGGC----------------
droBip1 scf7180000396424:1025692-1025949 + GTCTGGCAGTTGAGGAAATGCCTGAGAGTTTTT---GT---AGATCCTTCACGGAT--GCAAGACCAGAATGCC------AGAAACTG---GCTCATCAT--TTCATCTTCATTGGAAACCGTTCCACTAAC----------------------CGCCGACACCTGCC-----CAC-TCGTC----------------------------GGCG----------------------GCTAGGGGTTAATGGCTCTTAGATGAGGCTA----------ACACA--CATTCCGACACGA-----TA----TTAATAATATGCG------T------------------------------------------T-------T-------ATTTC-TTTCAGCTAATGATATCGGACACCTCCG--------------------------------------------ATGTGCGTGGTGCGTGGG---T----------------
dp5 2:24097454-24097792 + ---------TTGAGGAAATGCTTGAGAGTTTTT---AT---AGATCCCTCACGGATCTGCG--------ATGCC------AGAAAGTA---GCTCAGCAT--T-------CTTTTGAAGC-----CACTAACTAACGTTTTTTCCGAGTCCAACCGATGACACCTGCCCTGCCCAC-TCTCCAGGCCCATCGCTGGCTCCTCCAC--------------------------------TTAGGGGTTAATGGCTTTTAGATTATTCCA----------AGACGC-ATTCCAGACAC-A--CTCTA----TTAACC--ATTC-GCTGCATTTCATATATTG------------AGTATTCAATAAGTTTGTGT-------C-----TTTTATC-TTGCAGCTAATGAAATTGGACACCTCCGTA---------------TTTGATGGCCCAGTGGCCTGAGGCCTGAGGC-------GCGTGGGCGGT----------------
droPer2 scaffold_3:6873901-6874239 + ---------TTGAGGAAATGCTTGAGAGTTTTT---AT---AGATCCCTCACGGATCTGCG--------ATGCC------AGAAAGTA---GCTCAGCAT--T-------CTTTTGAAGC-----CACTAACTAACGTTTTTTCCGAGCCAAACCGATGACACCTGCCCTGCCCAC-TCTCCAGGCCCATCGCTGGCTCCTCCAC--------------------------------TTAGGGGTTAATGGCTTTTAGATTATTCCA----------AGACGC-ATTCCAGACAC-A--CTCTA----TTAACC--ATTC-GCTGCATTTCATATATTG------------AGTATTCAATAAGTTTGTGT-------C-----TTTTATC-TTGCAGCTAATGAAATTGGACACCTCCGTA---------------TTTGATGGCCCAGTGGCCTGAGGCCTGAGGC-------GCGTGGGCGGT----------------
droWil2 scf2_1100000004943:15165581-15165881 - ------------AGGAAATGTTTAAGAGTTTCTCT-CTACTTCATCCTTAACGGAT--GCT--------------------GTAACTG---GCTCAGCAT--T-------CTTTTCA-A-----------------------------------CAGAAACACCTGCC-----CATCTTTCCATCGCCATT-----------------GAAGCAGTCACTTTTATTGTCTTTTGGTGTC-TAGTTTAATGAATTTGAAATTATGCAT----------ACTTA--CAT-TTGACACGACGATCAA----TT---AATATGCA------TTTT----------------------T-------ATGTTTATGT-------C-----TTTTATCTTTGCAGCTAATGAAATTGGACACCTTTGATAC----TACTTGACTTGTGATGGCCACCTAGCCCAAAATATC-AGT-------GTGTGGGTGTC----------------
droVir3 scaffold_13047:6464089-6464303 + TG--------------------------------A-GT---GCATCCTTGACGGAT--GCTG--CTTGCATTCCACGTGGAGCACTTAATGGC---TCTC------------------A-----------------------------------CATCACCTGCTGCC-----CAC-ATTGT-------TGGCTAGCTGGC---------------C-------------------AGC-TGTATTAACGGCTTTTATA--AATTAT----------GCATTCCGACTTTGATACGA-----TA----TT---AATATGCGGCTG--ATTG---------------------AAATTTTGTATCT-TGTAT-------C-----TTGTTTG-TTGCAGCTAATGAAACTTAACACCTTCG----------------------------------------------------------------------------------
droMoj3 scaffold_6540:1610507-1610556 - TTGCTCTTCTTCTTGTATTC--TACA--TATTTTT-GC---GCATCCTTGGCGGAT--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:11767757-11768062 + TG---ACAGCTG-----------GAGAGTTTTTCCTAA---GCATCCTTGACGGAT--GCTGG------TTG-C------ATT--------CCCCAGCTTATGTGGCCAACATTCGTAG-----------------------------------CGGCATCACCTGCT--GCCCAC------------------------------------------------------------ATTGTTGGTTAGCTGTTAACCGTTAACGCCACTTTAAATTATTAAGCATTCC-----ATGA-----CA----TT---AATATGCA------ATTTT--TTTTTAGCAATTTACATGGAAATTTATGTTT-TGTAT-------T-----TTGTTTG-TTGCAGCTAATGAAACTTGACACCTCCGGCAACAACTAATCGAA-TTTGATGGCC---CT-------GCTTG--GT-------GCGTGGGTGGCAATAAATTAGAGATCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTCCGTCGCTCGAGGAAATGCTTTCAAGTTTTTGT-GC---AGATCCATCACGGAT--GCC--------GTGCC------AGGAATTA---GCTCAGCTC------------------A-----------------------------------CGATGACACCTGCC-----CAC-TTGA---------------------------ACAGCTCCT-------------------ACCGGGGGTTAATGGTTCATAGATGAGGCCA--------------TCAATTCCCGACACCA-----GA----TT---ATCATGC-------TTTC---------------------ATACTCAATATGG-T--TT-------T-----ATTTGTC-TTTCAGCTAATGAAATTGGACACATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTGGGAGCT----------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................TGGACACATCCGAAGA---------------------CC---TC-------GCCCGA.....................................2613.00300000000000021000
..................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATTGGACACATCCGAAGA---------------------CC---TC-------...........................................2611.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGACACATCCGAAGA---------------------CC---TC-------GCCC.......................................2811.00101000000000000000
........................................................................CC------AGGAATTA---GCTCT......................................................................................................................................................................................................................................................................................................................................................................................................................1560.17100000000010000000
droSec2
GTCCGTCGCTTGAGGAAATGCTTTCAAGTTTTTGT-GC---AGATCCATCACGGAT--GCC--------GTGCC------AGGAATTA---GCTCAGCTC------------------A-----------------------------------CGATGACACCTGCC-----CAC-TTGA---------------------------ACAGCTCCT-------------------ACCGGGGGTTAATGGTTCATAGATGAGGCCA--------------TCAATTCCCGACACCA-----GA----TT---ATCATGC-------TTTT---------------------ATACTCAATATGG-T--TT-------T-----ATTTGTC-TTTCAGCTAATGAAATTGGACACATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTGGGAGCT----------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------------CC---TC-------GCCCGATGT-------GCGTG......................2011.0010010
dm3
GTCCGTCGATTGAGGAAATGCTTTCAAGTTTTTGT-GC---AGATCCATCACGGAT--GCC--------GTGCC------AGGAATTA---GCTCTGCTC------------------A-----------------------------------TGATGACACCTGCC-----CAC-TTGA---------------------------ACAGCTCCT-------------------ACCAGGGGTTAATGGTTCATAGATGAGGCCA--------------TCAATTTCCGACACCA-----GA----TT---ATCATGC-------TTTT---------------------ATACTCAATATGG-T--TT-------T-----ATTTGTC-TTTCAGCTAATGAAATTGGACACATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTGGGTGCT----------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................TAATGAAATTGGACACATCCGAAGA---------------------CC---....................................................27135.003500000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001000000000000000300027120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010400000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACACATCCGAAGA---------------------CC---TC-------GCCCGA.....................................27115.001500000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTG......................26114.00140000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100700000
............................................................................................................................................................................................................................................................................................................................................................................................................................CACATCCGAAGA---------------------CC---TC-------GCCCGATG...................................24114.001400000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000001001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGT.......................25110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000020000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000101000000000000000000101000
...............................................................................................................................................................................................................................................................................................................................................................................................................TAATGAAATTGGACACATCCGAAGA---------------------C........................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCG........................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAAGA---------------------CC---TC-------GCCCGATGT-------GC.........................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000
............................................................................................................................................................................................................................................................................................................................................................................................................................CACATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GC.........................2715.0050000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGACACATCCGAAGA---------------------CC---TC-------GC.........................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACACATCCGAAGA---------------------CC---TC-------GCCCGATG...................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACACATCCGAAGA---------------------CC---TC-------GCCCGA.....................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGT.......................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTG......................2713.0030000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...............................................................................................................................................................................................................................................................................................................................................................................................................TAATGAAATTGGACACATCCGAAGA---------------------CC---T...................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAATTGGACACATCCGAAGA---------------------CC---....................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GC.........................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100110000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GC.........................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACACATCCGAAGA---------------------CC---TC-------GCCC.......................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATTGGACACATCCGAAGA---------------------CC---....................................................2413.0030000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTGGG....................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGT.......................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000
.......GATTGAGGAAATGCTTTCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGACACATCCGAAGA---------------------CC---TC-------GCCC.......................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGACACATCCGAAGA---------------------CC---TC-------GCC........................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGACACATCCGAAGA---------------------CC---....................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACACATCCGAAGA---------------------C........................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TC-------GCCCGATGT-------GCGTGG.....................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TGGACACATCCGAAGA---------------------CC---TC-------GCCCGA.....................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.....................................................GAT--GCC--------GTGCC------AGGAATTA---GCTCTGC....................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAATTGGACACATCCGAAGA---------------------.........................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TAATGAAATTGGACACATCCGAAGA---------------------CC---TC-------...........................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCG........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAATTGGACACATCCGAA................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGA---------------------CC---TC-------GCCCGATGT-------GC.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAAATTGGACACATCCGAA................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTGGGT...................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGA---------------------CC---TC-------GCCCGATGT-------GCGTG......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAATTGGACACATCCGAAGA---------------------CC---TC-------...........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TCACGGAT--GCC--------GTGCC------AGGAATTA---GC.........................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................TGGACACATCCGAAGA---------------------CC---TC-------GCCCGATG...................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GGACACATCCGAAGA---------------------CC---TC-------GCCCGATG...................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGACACATCCGAAGA---------------------CC---TC-------GCCCGA.....................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CTAATGAAATTGGACACATCCGAAGA---------------------C........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCCGTCGATTGAGGAAATGCTTTCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACACATCCGAAGA---------------------CC---TC-------GCCCGATG...................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTG......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACACATCCGAAGA---------------------CC---T...................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAAGA---------------------CC---TC-------GCCCGATGT-------CAT........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................GCTC------------------A-----------------------------------TGATGACACCTGCC-----CAC-TTGA---------------------------AC....................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAAGA---------------------CC---TC-------GCCCGATGT-------G..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATTGGACACATCCGAAGA---------------------CC---TC-------GCCC.......................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACACATCCGAAGA---------------------CC---T...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CACATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCG........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GGACACATCCGAAGA---------------------CC---TC-------GCC........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................TCAATATGG-T--TT-------T-----ATTTGTC-TTTCAGC.......................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................CACGGAT--GCC--------GTGCC------AGGAATTA---GC.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TAATGAAATTGGACACATCCGAAGA---------------------.........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGACACATCCGAAGA---------------------CC---TC-------GC.........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTGG.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACACATCCGAAGA---------------------CC---TC-------...........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACACATCCGAAGA---------------------CC---TC-------GCCCGATGT-------G..........................2711.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------------CC---TC-------GCCCGATGT-------GCGTG......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGACACATCCGAAGA---------------------CC---T...................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CTAATGAAATTGGACACATCCGAA................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTT......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGCTAATGAAATTGGACACA......................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGAAATTGGACACATCCGAA................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAAATTGGACACATCCGAAGA---------------------CC---....................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCG........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGA---------------------CC---TC-------GCCCGATGT-------GC.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CTAATGAAATTGGACACATCCGAAGA---------------------CC---....................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TCAATATGG-T--TT-------T-----ATTTGTC-TTTCAG........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACACATCCGAAGA---------------------CC---TC-------GCCCGT.....................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CACATCCGAAGA---------------------CC---TC-------GCCCGATGT-------G..........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATTGGACACATCCGAAGA---------------------CC---TC-------GCCT.......................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................GTGCC------AGGAATTA---GCTCTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACACATCCGAAGA---------------------CC---TC-------GCCC.......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACACATCCGAAGA---------------------CC---TC-------GCCCGA.....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACACATCCGAAGA---------------------CC---TC-------GCC........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGAAGA---------------------CC---TC-------GCCCGA.....................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TTA---GCTCTGCTC------------------A-----------------------------------TGATGACACCTGC...............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TCATGC-------TTTT---------------------ATACTCAATATGG-T--TT-------............................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGGACACATCCGAAGA---------------------CC---TC-------GCC........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................TAATGGTTCATAGATGAGGCCA--------------TC...........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGTGG.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAATTGGACACATCCGAAGA---------------------C........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCGAAGA---------------------CC---TC-------GCCCGATGT-------GCGT.......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................ACTCAATATGG-T--TT-------T-----ATCC..................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
droEre2
GTCCGTCGGTTGAGGAAATGCTTGTAAGTTTTTGT-GC---AGATCCATCACGGAT--GCC--------GTGCC------AGGAATTG---GCTCAGCTC------------------A-----------------------------------TGATGACACCTGCC-----CAC-TTGA---------------------------AAAGCTCGT-------------------ACTGGGGGTTAACGGTTCATAGATGAGGCCT--------------CCAATTTCCGACACCA-----CA----TT---ATCATGG-------TTTT---------------------ATACTCAATATGA-T--TT-------TATTTCTTTCAGC-TTTCAGCTAATGAAATTGACTACATCCGAGGA---------------------CC---TC-------GCCCGATGT-------GCGT-----------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGACTACATCCGAGGA---------------------CC---TC-------...........................................2511.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................AATTGACTACATCCGAGGA---------------------C........................................................2011.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................GACTACATCCGAGGA---------------------CC---T...................................................1811.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGACTACATCCGAG................................................................................1911.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACTACATCCGAGGA---------------------CC---TC-------...........................................2211.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGA---------------------CC---TC-------GCCCGATGT-------GCGT-----------------------2011.0010000010
droYak3
CTGCGTCGTTTGAGGAAATGCTTGTAAGTTTTTGT-GC---AGATCCACCAAGG-----------------------------AATGA---GCTCAGCTA------------------A-----------------------------------TGGTGACACCTGCC-----AAC-TTTA---------------------------AATGCCCGT-------------------ACC-G-GGGTAATGGTTCATAGATGACGCCT--------------CCAATTTCAGACAGCA-----ATCTTGCTTTTATCTTGT-------TTTT---------------------ATACACAATATG----TTC-------C-----ATTTTTC-TTTCAGCTAATAAATTTGGCCACATCCGAAAA---------------------TC---TC-------TCCCGATGT-------GCGTGG---------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GTCCGCCGGTTGAGGAAATTCTTGCCAGTTTTTCT-CC---AGATCCTTCACGGAT--GCCAGA-AACTGTGCC------AGAAACTA---GCTTGGCAG------------------A-----------------------------------TGATGACACCTGCC-----CAC-TCAA---------------------------AAAGACA-C-------------------ACCAGGGGTTAATGGTTCCTAGATGAGGCCA----------GCTCTTACGTTCCGACAGCA-----CA----TT---AGAAAGCG------TTTT---------------------ATACTCAATCAGG-TGTAT-------C-----T-TTGTT-TTGCAGCTGATGAAATTGGACACCTCAAGAGA---------------------CC---CC-------GCCCGATGT-------CCGTGGGTGGT----------------SizeHit CountTotal NormTotal
No Reads
droBia1
GTCTGCGAGTTGAGGAAATGCCTGCCAGTTTTTCT-GC---AGATCCTTCACGGAT--GCA--------CTGCC------AGAAACTA---GCTTAGCAG------------------A-----------------------------------CGATGCCACCTGCC-----CAC-TCGG---------------------------CGAGCTCCG-------------------ACC-GGGGTTAATGGTTCCTAGATGAGGCCA-----------CACTCGCATATCGACACCA-----TA----TC---AATGTGCG------ATGT---------------------ATACTAAGTGAGG-TGTTT-------C-----TTTTGTC-TTGCAGCTAATGAAATTGGACACCTCCAGCAA---------------------CC---CC-------GTTCGATGT-------GCGTGGGAGGT----------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTCTGCCAGTTGAGGAAATGCTCGAGAGTTCTTCT-GC---AGATCCTTCACGGAT--GCA--------GTGGC------TGAAACTA---GCTC------------------------------------------------------------------ACCTGCC-----CAC-TCAAC-----------------------TA-AGAGCTGAG-------------------AGC-GGGGTTAATGGTTTCCAGATGAGGCCA----------GCACTCGAATTCCGACACCA-----TA----TT---ATCGTGCG------TTTC---------------------GTACTAAACAAGG-TGTTT-------C-----TTTTGTT-TTGCAGCTAATGAAATTGGACACCTCCAGAAA---------------------CC---GC-------GCCCGATGC-------GCGTGGGTGGT----------------SizeHit CountTotal NormTotal
No Reads
droEle1
GG----CAGTTGAGGAAATGCCTGCGAGTTTTTCT-GC---AGATCCTTCACGGAT--GCA--------GTGGC------AGAAACTA---GCTCATCAA------------------A-----------------------------------TGACGACACCTGCC-----CAC-TCAAC-----------------------TTTGTAGCTCTA-------------------GCATGGGGTTAATGGTTGCTGGATGAGGCCA----------GCGTCCAAATTCCGACACCA-----TG----CTCATAATATGCG------ATTT---------------------ATACTCAATAAGG-TGTAT-------C-----TTTTATA-TTTCAGCTAATGAAATCGGACACCTCCAAAGA---------------------CC---CC----GCCGCCCGATGT-------GCGTGGGTGGT----------------SizeHit CountTotal NormTotal
No Reads
droRho1
GTCTGTCAGTTGAGGAAATGCTTGCCGGTTTTTCT-GT---AGATCCTTCACGGAT--GCA--------GTGCC------GCCAACTA---GCTCAGCAC------------------A-----------------------------------TGATGACACCTGCC-----CAC-TCGTC-----------------------TTGGAAGTTT-T-------------------AGCAGGGGTTAATGGTTCCTAGATGAGGCCA----------GCTCTCAGGTTCCGACACCG-----TA----TTCATAATATGCC------TTTT---------------------ATACTCAATAAGG-TGTAT-------C-----TTTTATT-TTGCAGCTAATGAAATCGGACACCTCCAAAGA---------------------CC---CC-------GCCCGATGC-------GCGTGGGTGGT----------------SizeHit CountTotal NormTotal
No Reads
droFic1
G-----------CGGAAATGCCTGCCAGCTCTCCA-GT---AGATCCTTTACGGAT--GCA---------GGCC------AGAAACGA---GTTCGGCCT------------------A------------------------------------GATGGCACCTGCC-TGCCCAC-CAGTT------------------------TGAAGGCTTGA-------------------AG-GGGGGTCA---------------TTCCA-----------------GTC-----TATCG-----CA----TC---TGTAAGCG------CTCC---------------------ATACTCATCCGGG-TGTAT-------C-----TCTTGTC-TTGCAGCTAATGAAATTGGACACCTCCCAGGC---------------------CC---CC-------GCCCGAGGT-------GCGTGGGTGGT----------------SizeHit CountTotal NormTotal
No Reads
droKik1
GG----CAGTTGAGGAAATGCCAGAGACT-TTTCC-AC---AGATCCTTCACGGATCTGCC--------ATGCC------AGAAACTG---GCTCAGCTA----------------A-A-----------------------------------CACCGACACCTGTC-----CAT-GGG--------------------------------------------------------GTC-GGGGTTGATGGCTGCCAGGTGAATCCG----------GCACTCAAGTTCCAACAGCT-----TTT---TTAATAATATGCG------TT-C------------------AAGGTACTCAATGATG-TGTTT-------C-----TGTTATC-TTGCAGCTAATGAAATCGGACACCTCCGTGGC---------------------CC---CC-------GCCCGATGT-------GCGTGGGTGGT----------------SizeHit CountTotal NormTotal
No Reads
droAna3
GTCTGGCAGTTGAGGAAATGCCTGAGAGTTTTT---GT---AGATCCTTCACGGAT--GTGAGGCTAGAATGCC------AGTAACTG---GCTCATCAT--CTCATCTTCGTTCGAAACGGTTCCACTAACCGAC---------CGGCCTA---ACCGACACCTGCC-----CAC-TCGTC----------------------------TGC---G-------------------GCT-GGGGTTAATGGCTTATAGATGAGGCTA----------ACAGA--CATTCTGACACGA-----TA----TTAATAATATGCG------T-TT---------------------AAACTTAAAAAGG-TGTATCTCTTCTC-T---TTATTTC-TTGCAGCTAATGAAATCGGACACCTCCGA--------------------------------------------TGTGCGTGGTGCGTGGGTGGC----------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGA--------------------------------------------TGTGCGTGGTGCGTGGGT...................2211.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................GA--------------------------------------------TGTGCGTGGTGCGTGGGT...................2011.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGACACCTCCGA--------------------------------------------TGTGCGTGGTGCG........................2711.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGACACCTCCGA--------------------------------------------TGTGCGTG.............................2311.001100000
droBip1
GTCTGGCAGTTGAGGAAATGCCTGAGAGTTTTT---GT---AGATCCTTCACGGAT--GCAAGACCAGAATGCC------AGAAACTG---GCTCATCAT--TTCATCTTCATTGGAAACCGTTCCACTAAC----------------------CGCCGACACCTGCC-----CAC-TCGTC----------------------------GGCG----------------------GCTAGGGGTTAATGGCTCTTAGATGAGGCTA----------ACACA--CATTCCGACACGA-----TA----TTAATAATATGCG------T------------------------------------------T-------T-------ATTTC-TTTCAGCTAATGATATCGGACACCTCCG--------------------------------------------ATGTGCGTGGTGCGTGGG---T----------------SizeHit CountTotal NormTotal
No Reads
dp5
---------TTGAGGAAATGCTTGAGAGTTTTT---AT---AGATCCCTCACGGATCTGCG--------ATGCC------AGAAAGTA---GCTCAGCAT--T-------CTTTTGAAGC-----CACTAACTAACGTTTTTTCCGAGTCCAACCGATGACACCTGCCCTGCCCAC-TCTCCAGGCCCATCGCTGGCTCCTCCAC--------------------------------TTAGGGGTTAATGGCTTTTAGATTATTCCA----------AGACGC-ATTCCAGACAC-A--CTCTA----TTAACC--ATTC-GCTGCATTTCATATATTG------------AGTATTCAATAAGTTTGTGT-------C-----TTTTATC-TTGCAGCTAATGAAATTGGACACCTCCGTA---------------TTTGATGGCCCAGTGGCCTGAGGCCTGAGGC-------GCGTGGGCGGT----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGAGGCCTGAGGC-------GCGTGGGC...................2511.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGCCTGAGGC-------GCGTGGGCGGT----------------2511.0010000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTGGCCTGAGGCCTGAGGC-------...........................2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCAGTGGCCTGAGGCCTGAGGC-------...........................2511.0010100000000
droPer2
---------TTGAGGAAATGCTTGAGAGTTTTT---AT---AGATCCCTCACGGATCTGCG--------ATGCC------AGAAAGTA---GCTCAGCAT--T-------CTTTTGAAGC-----CACTAACTAACGTTTTTTCCGAGCCAAACCGATGACACCTGCCCTGCCCAC-TCTCCAGGCCCATCGCTGGCTCCTCCAC--------------------------------TTAGGGGTTAATGGCTTTTAGATTATTCCA----------AGACGC-ATTCCAGACAC-A--CTCTA----TTAACC--ATTC-GCTGCATTTCATATATTG------------AGTATTCAATAAGTTTGTGT-------C-----TTTTATC-TTGCAGCTAATGAAATTGGACACCTCCGTA---------------TTTGATGGCCCAGTGGCCTGAGGCCTGAGGC-------GCGTGGGCGGT----------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAATTGGACACCTCCGT.................................................................................2112.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCGTA---------------TTTGATGGCCCA.....................................................2211.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCCTGAGGC-------GCGTGGGCGGT----------------2411.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAATTGGACACCTCCGG.................................................................................2111.001100000
droWil2
------------AGGAAATGTTTAAGAGTTTCTCT-CTACTTCATCCTTAACGGAT--GCT--------------------GTAACTG---GCTCAGCAT--T-------CTTTTCA-A-----------------------------------CAGAAACACCTGCC-----CATCTTTCCATCGCCATT-----------------GAAGCAGTCACTTTTATTGTCTTTTGGTGTC-TAGTTTAATGAATTTGAAATTATGCAT----------ACTTA--CAT-TTGACACGACGATCAA----TT---AATATGCA------TTTT----------------------T-------ATGTTTATGT-------C-----TTTTATCTTTGCAGCTAATGAAATTGGACACCTTTGATAC----TACTTGACTTGTGATGGCCACCTAGCCCAAAATATC-AGT-------GTGTGGGTGTC----------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAATATC-AGT-------GTGTGGGT...................2112.00200200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGACTTGTGATGGCCACC....................................................2012.00220000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACACCTTTGATAC----TACTTGA...................................................................2511.00110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATC-AGT-------GTGTGGGTGTC----------------2111.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATAC----TACTTGACTTGTGATGGC........................................................2511.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAATTGGACACCTTTGATAC----TAC.......................................................................2611.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATATC-AGT-------GTGTGGGT...................2011.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATC-AGT-------GTGTGGGTGT.................1911.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAATTGGACACCTTTGATAC----TACT......................................................................2811.00110000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATATC-AGT-------GTGTGGGTGTC----------------2211.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAATTGGACACCTTTGATAC----T.........................................................................2511.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATC-AGT-------GTGTGGGTGTC----------------1911.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACACCTTTGATAC----TACT......................................................................2111.00110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATC-AGT-------GTGTGGGTGTC----------------2011.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAGCCCAAAATATC-AGT-------GTGTG......................2411.00100010
droVir3
TG--------------------------------A-GT---GCATCCTTGACGGAT--GCTG--CTTGCATTCCACGTGGAGCACTTAATGGC---TCTC------------------A-----------------------------------CATCACCTGCTGCC-----CAC-ATTGT-------TGGCTAGCTGGC---------------C-------------------AGC-TGTATTAACGGCTTTTATA--AATTAT----------GCATTCCGACTTTGATACGA-----TA----TT---AATATGCGGCTG--ATTG---------------------AAATTTTGTATCT-TGTAT-------C-----TTGTTTG-TTGCAGCTAATGAAACTTAACACCTTCG----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................CTTTTATA--AATTAT----------GCATTCCGACTT.....................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TTGCTCTTCTTCTTGTATTC--TACA--TATTTTT-GC---GCATCCTTGGCGGAT--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........TCTTGTATTC--TACA--TATTTTT-GC---G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droGri2
TG---ACAGCTG-----------GAGAGTTTTTCCTAA---GCATCCTTGACGGAT--GCTGG------TTG-C------ATT--------CCCCAGCTTATGTGGCCAACATTCGTAG-----------------------------------CGGCATCACCTGCT--GCCCAC------------------------------------------------------------ATTGTTGGTTAGCTGTTAACCGTTAACGCCACTTTAAATTATTAAGCATTCC-----ATGA-----CA----TT---AATATGCA------ATTTT--TTTTTAGCAATTTACATGGAAATTTATGTTT-TGTAT-------T-----TTGTTTG-TTGCAGCTAATGAAACTTGACACCTCCGGCAACAACTAATCGAA-TTTGATGGCC---CT-------GCTTG--GT-------GCGTGGGTGGCAATAAATTAGAGATCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGGCC---CT-------GCTTG--GT-------GCGTG......................2411.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGCAACAACTAATCGAA-.................................................................2011.00110

Generated: 05/19/2015 at 02:36 PM