ID:

dsi_11834

 Coordinate:

2l:18390679-18390828 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.6 -11.1 -11.1

Flybase annnotation

exon [2l_18389734_18391325_-]; CDS [2l_18389734_18391325_-]

Repeatable elements

NameClassFamilyStrand
CT-richLow_complexityLow_complexity+

Sense Strand Reads

##########################################################################################################################################################################################################################################################
TCAAAAAGGATAAGGACAAGGAAAAGTCTAGGGAGAAGGATAGAGATAAGGTAAAGGAGCGAAGCAAAGAAAAGGAGAAGGAAAAAGAAAAGAAAAACGAAACTCCAAAAAAACATGCAACGCCAGCAAAGAGCTCTTTGAGTGAGCCCTCGCCCGCCAAAATTCCCAGATTAAATAATGACACAGCTCCTGCAACTGCTCCTCCACTGAAATCTACACCCTCATCTGCGCCACCTACTTGCACTCTTCC
******************************************************************************...............................................(((..(((((.((((.(((.((....)).))))))).......................))))).)))....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR902009
testis
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
TCAAAAAGGATAAGGACAAGGAAAAGTC.............................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................AGGAAAAAGAAAAGAAAAACGAAACTCCA............................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................AATGACACAGCTCCTGCAACT..................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.......................................................GGAGCGAAGCAAAGAAAAGGAGAAG.......................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................AAAGAGCTCTTTGAGTGAGCC...................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................ATAGAGATAAGGTAAAGGAGC.............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................TCTAGGGAGAAGGATAGAGATAAGGTA..................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................AACATGCAACGCCAGCAAA........................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........AAGGACAAGGAAAAGT............................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......AGGATAAGGACAAGGAAAAGT............................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................AGAAGAACCAGACTCCAAAAAAA......................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..................................GAAGGATGGAGATAAAGTA..................................................................................................................................................................................................... 19 2 3 0.67 2 0 0 0 0 0 2 0 0 0 0
..................................................................................................................................................................TTCCCAGATTAAATA......................................................................... 15 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..................................GAAGGATTGGGATAAAGTAAA................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0
.................................................................AAAGAAAAGGAGAGGGGAAA..................................................................................................................................................................... 20 2 14 0.21 3 0 3 0 0 0 0 0 0 0 0
.................................................................AAAGAAAAGGAGAGGGGAAAA.................................................................................................................................................................... 21 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.................................................................AAAGAAAAGGAGAGGGATAA..................................................................................................................................................................... 20 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.................................................................AAAGAAAAGGAGAGGGGATAA.................................................................................................................................................................... 21 3 17 0.18 3 0 3 0 0 0 0 0 0 0 0
........................................................................AGGAGAAGGTAGAAAAAAAGAA............................................................................................................................................................ 22 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
......................ACAGCCAAGGGAGAAGGATA................................................................................................................................................................................................................ 20 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................ACATAGATCCTGAAACTGC................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 1 0
.....................................................................AACAGGATAAGGAAAAAGCAA................................................................................................................................................................ 21 3 18 0.06 1 0 0 0 0 0 0 0 0 0 1
..................................GAAGGATCGGGATAAAGTA..................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

AGTTTTTCCTATTCCTGTTCCTTTTCAGATCCCTCTTCCTATCTCTATTCCATTTCCTCGCTTCGTTTCTTTTCCTCTTCCTTTTTCTTTTCTTTTTGCTTTGAGGTTTTTTTGTACGTTGCGGTCGTTTCTCGAGAAACTCACTCGGGAGCGGGCGGTTTTAAGGGTCTAATTTATTACTGTGTCGAGGACGTTGACGAGGAGGTGACTTTAGATGTGGGAGTAGACGCGGTGGATGAACGTGAGAAGG
*****************************************************...............................................(((..(((((.((((.(((.((....)).))))))).......................))))).)))....****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M053
female body
 SRR553488
RT_0-2 hours eggs
............................................................................................................................................................................................................TCGACTTTAGATGTGGGAGTAG........................ 22 2 1 1.00 1 0 1 0 0 0 0
.......................................................................TTCCTGTTCCTTTTTCTTTTCT............................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
........................................................CTCGCTACGTTTTTTTTCCTCCT........................................................................................................................................................................... 23 3 4 0.25 1 1 0 0 0 0 0
...........................................................................................................................GTCGTTTGTCGAGAATCTCAA.......................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0
........................................................................................................................................................................................TCGAGGACGTTGTCGATGACGT............................................ 22 3 19 0.21 4 0 0 4 0 0 0
....................................................................................................................................................AAGCGGGCGGTTTTAA...................................................................................... 16 1 5 0.20 1 0 0 0 1 0 0
..........................................................................................................................GGTTGTTTCTCGAGAA................................................................................................................ 16 1 9 0.11 1 1 0 0 0 0 0
......................................................................TATCCTCTCCCTTTTTCTTAT............................................................................................................................................................... 21 3 10 0.10 1 0 0 0 0 1 0
..........................................................................................................................................................................................TAGGACGTTGACGAGG................................................ 16 1 20 0.05 1 0 0 0 0 0 1
.........................................................TCGCTTCGTTTCTTGAC................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:18390629-18390878 - dsi_11834 TC---AAAAAGGATAAGGACAAGGAAAAGTC---------------------------------------------------------TAGGGAGAAGG------------------------ATAGAGATAA------------G------GTAAAGGAGCGAAGCAA------------AGAAAAGGAGAAGGA------------------AAAAGAAAAGAAAAACGA---AACTCCAAAAAAACAT---------GCAACGCCAGCAAAGA---GCTCTTTGAGTGAGCCCTCGCCCGCCAAAATTCCCAGATTAAATAATGAC-A------------CAGCTCC---------------------------------------------TGCAAC------------------TGCTCCTCC---------ACTGAAATCT------------A----CACCCTCATCTGCGCC---ACCTACTTGCACTCTTCC------
droSec2 scaffold_7:2461847-2462096 - TC---AAAAAGGATAAGGACAAGGAAAAGTC---------------------------------------------------------TAGGGAGAAGG------------------------ATAGAGATAA------------G------GTAAAGGAGCGAAGCAA------------AGAAAAGGAGAAGGA------------------AAAAGAAAAGAAAAACGA---AACTCCAAAAAAACAT---------GCAACGCCAGCAAAGA---GCTCTTCGAGTGAGCCCTCGCCCGCCAAAATTCCCAGATTAAATAATGAC-A------------CAGCTCC---------------------------------------------TGCAAC------------------TGCTCCTCC---------ACTGAAATCT------------A----CACCCTCATCTGCGCC---ACCTACTTGCACTCTTCC------
dm3 chr2L:18835393-18835642 - TC---AAAAAGGATAAGGACAAGGAAAAGTC---------------------------------------------------------TAGGGGGAAGG------------------------ATAGAGATAA------------G------GAAAAGGAACGAGGCAA------------GGAAAAGGAAAAGGA------------------AAAAGAAAAGAAAAACGA---TACTCCTAAAAAACAT---------GCAACGCCAGCAAAGA---GCTCTTTGAGTGAGCCCTCGCCCGCCAAAATTCCCAAATTAAATAATGAC-A------------CAGCTCC---------------------------------------------TGCAAC------------------TGCACTTCC---------ACTGAAATCT------------A----CACCCTCCTCTGCGCC---ACCTACGTGCACTCTTCC------
droEre2 scaffold_4845:5440771-5441059 + TA---AAAAAGGATAAAGAGAAGGAAAAGTC---------------------------------------------------------TAGGGAGAAGG------------------------ATAGAGACAA------------G------GAAAAGGAAAGAAGCAA------------AGAAAAGGAGAAGGA------------AAAAGAAAAAGAAAGGAAAATCGA---AACTCCGAAAAAACAT---------GCAACGCCAGCAAAGA---GCTCTTTGAGTGAGCCCTCGCCCGCCAAAATTCCCAGATTAAACAGTGAC-A------------CAGCTCC--CAATGC----------TTCAGAT------CCCACAGTTGTTGCTACAGC------------------AGCTCCTGC---------CCCAAAATCTATAGCC------A----CACCCCCTTCTGCACC---ACCTATTTGCACTATTCC------
droYak3 2R:5349940-5350228 - TC---AAAAAGGATAAGGAGAAGGAAAAGTC---------------------------------------------------------TAGGGAGAAGG------------------------ATAGAGACAA------------G------GAAAAGGAAAGAAGCAA------------ACAAAAGGAGAAGGA------------GAAGGAAAAAGAAAAGAAAATCGA---AACTCCAAAAAAACAT---------GCAACGCCAGCAAAGA---GCTCTTTGAGTGAGCCATCGCCCGCCAAAATTCCCAGGCTAAACAATGAC-A------------CAGCTCC--CAATGC----------TTCAAAT------CCCACAATTGTTGCTAAGGC------------------AGCTGCTAC---------ACTGAAATCTATGGCC------A----CACCATCTTCTGCACC---ACCTATTTGCACTCTTCC------
droEug1 scf7180000409463:1166033-1166325 - CC---AAAAAGGAAAAGGAGAAAGAAAAGCC---------------------------------------------------------AAGGGAGAAGG------------------------ATAGAGATAA------------A------GATAAGGATAAAGACAAAGAAAAGGAGAAGGAAAAGGAAAAGGA------------------AAAGGAAAGGAGGAGCGA---AACTCCCAAAAAACAT---------TCAACACCAGCCAAGAGCTGTTCCATAAGCGAGCCTTCGCCAGCTAAAATTCCCCGTTTAAACAATGAT-G------------CATCTAC--CAATTC----------TCCTGTT------TCCGCAGTTGTTCCAAAAGC------------------TGCTCCTAC---------ACTTAAACCTGTACCTATTCCTATACC----CGCATGTGCACC---ACTT-----------ACC------
droBia1 scf7180000302422:4832534-4832813 + CC---AAGAAGGATAAGGAGAAGGAAAAGAC---------------------------------------------------------AAGGGAGAAAG------------------------ATAGAGGTAA------------A------GAAAAGGAC------------------------AAAGAGAAGGA------------------AAAGGAAAAAAGAAGCGA---AACTCCGAAAAAGCAT---------TCAACGCCAGCCAAGAGTTGCTCCATAAGTGAGCCCTCACCTGCCAAAATTCCCCGTTTGAACAATGAC-A------------CAACTCC--CAGTTC----------TCTTGCT------CCCGCAGTCGTTCCCACAGC------------------TGCTTCTAC---------AGTCAAACCTATACCCAATCCTATACC----TGCATCTGCACC---AACTATTCCAACTCTCCC------
droTak1 scf7180000415385:74952-75195 + CC---AAGAAGGATAAAGAGAAGGAAAAGTC---------------------------------------------------------AAGGGAGAAGG------------------------ATAGGGATAA------------G------GAAAA------------------------------------GGA------------------GAAGGAAAGGAGGAGCGA---GACTCCCAAGAAGCAC---------ACAACGCCAGCCAAGAGCAGCTCCATAAGCGAACCCTCGCCTGCCAAAATTCCTCGTCTCAGCAATGAC-A------------CAACTTC--CAGTTC----------ACCTGCTCCCATTCCCACAGTTGTTCCCACAGC------------------AGCTTCTA-------------------------------------------CTACTGCACC---ACCTATTCCCACACCACC------
droEle1 scf7180000491046:4178867-4179158 + CC---AAGAAGGATAAGGAGAAGGAAAAGTC---------------------------------------------------------TAGGGA------------------------------------TAA------------A------GAAAGGGAAAAAGACAA------------GGAAAAGGAGAAGGA------------------CAAGGAACGAAGGAGCGAATCAACGCCCAAAAAGCAT---------ACTACGCCAGCCAAAACCTGCTCGATAAGTGAGCCTTCACCTGCCAAAATTCCCCGCTTAGGCAATGAC-G------------CAGTTAC--CAATCC----------TCCCGCT------CCTGCAGCTGTTTCTACAGC------------------TACTCCTACAGCTGCTGTACTCAAACCTGCACCCACACCTATATC----CGCTTCGGCACC---ACCTGTTCCAGCTCTGCC------
droRho1 scf7180000764475:39131-39428 + CC---AAAAAGGATAAGGAGAAGGAAAAGTC---------------------------------------------------------CAGGGAGAAAG------------------------ATAGGGATAA------------A------GAAAGAGAAAGGGGCAA------------AGAAAAGGA------------------------GAAGGAGCGGAGGAGCGAACCAACGCCCAAAAAGCAT---------TCAACGCCAGCCAAAACCTGCTCCATAAATGAGCCTTCACCTGCCAAAATTCCCCGTTTGGGCAATGAC-A------------CAGCCCC--CAATTC----------TCCCGCT------CCTGTAGTTGTTCCTACAGC------------------TGCTCCTACAGCTTCTACACTCAAACCTTTACTCACACCTATAGC----CAAACCGGCACC---CCCTGTTCCCACTCTCCC------
droFic1 scf7180000454059:88058-88343 + CC---AAAAAGGATAAGGATAAGGAAAAGAT---------------------------------------------------------TAGGGAGAAAG------------------------GTAGAGAAAA------------G------GAAAAGGAACGAGACAA------------AG------ACAAGGA------------------AAAAGAAAGGAGGAGTGAAGCAACGCCGAAGAAGCAT---------ACTGCACCAGCGAAGACTTCCTCCATAAGCGAGCCTTCGCCTGCTAAAATTCTCCGTTTAAGCAATGAC-A------------CGGCTCA--AAGTTC----------TCCATCT------------GTTGTTAACTCAGT------------------TGCGTCTAC---------ACCTAAACCTATACTTACACCCATATC----TGCTCCTGCACCACTGCCTGTTCCTACTCTTCC------
droKik1 scf7180000302570:803002-803275 + AAAGAGAGAAGGATAAGGAAAGGGAGAAGGA---------------------------------------------------------TAAGGA---AA------------------------AGAAGGACAAAGAT------AAA------GAAAAGGAGAAAAAGGA---------TAAGGAAAAGGACTCGGA------------------GAAGGATAAGAGAAGCGACCACACGACCAAGAAGCAT------CCTGCAACGCCAGCCAAGACCTCAACCCTAAGTGCACCTTCGCCGGCCAAGATGCCACGCCTAAATAATGAA-G------------CAGCTCCTTCAAT------------ACCCACT------------CCCATCCCCACGCC------------------CACCCCTCT---------TC-------------------------------CAACTCCCAT---ACCCACTCCTGCCTCCTC------
droAna3 scaffold_12916:8301577-8301880 + CC---AAAAAGAGTAAGGACAA------GTCAAGGGAGAAGGATAA---------AGAAAAGGAGAAGGA------------------AAAGGA---AA---AGGAGAAGTCAAAGTCAAAGGATAAAGATAA------GGAGAAG------GAAAAGGAAAAGATCAA------------GGAAAGAGAACAATATAAGGATAAGCA------GACGGACAAAAAGAGCGATAGCACGCCTAAGAAGCAC---------TTACCTTCAGCCAAGTCCTGCTCACTCAGTTCGCCTTCGCCTGCAAAAATCTCCCGGCTAACGAACGAT-G------------TACCTGC--TATTGC----------CTCAGCC----------------------------------------------------------------------------------------------TCAGCCGCAGC---ACCTGCTCCTCCTGCTCCAATAAG
droBip1 scf7180000396728:13161-13421 - CC---AAAAAA-ATAAGGAGAAATCAAGGGA------AAAGGAT---------------------------AAAGAAAAAGA------AAAGTCGAAGT------------------CTAAAGATAAGGATAA------------G------GAGAA------GATTAA------------GGAACGAGAGCAATATAAGGAAAAGCA------GACAGACAAAAAGAGCGATAACACACCTAAGAAGCAT---------TTAACTTCAGCAAAGACCTGCTCTCTCAGTTCGCCTTCGCCTGCCAAAATCTGCCGGCTAACGAACGAA-G------------TACCTGC--TATTGC----------CTCAGC----------------------------------------------------------------------------------------------------TGCAGC---ACCTGCTCCTCCAAATTC------
dp5 4_group3:4842218-4842467 - CC---AAAAAGGTGAAGGAAAAGGC---GTC---------------CAGCAAGTCGGA------------------------------CAAGGAGAAGG------------------------ACAAAGATAA------GGAGAAG------GAAAAGGA------AAA------------AGAAAAAGAGAAGGA------------------GAAGGATCGACGCAGTGAGCACACAACCAAAAAGCAACACCAA---TCATCGTCGCCAACGT------------CTTCGCCGACACCAGCTAAAATGCCACGACTGACCAGCACC-AAT------TCAG---------------CAGCTACTGCTGCA---------------------------GC---------------TACCGT---TC-------------------------------------------CTGCTGCCAC---TCCTGCCCCATCTCTGCC------
droPer2 scaffold_1:6333432-6333681 - CC---AAAAAGGTGAAGGAAAAGGC---GTC---------------CAGCAAGTCGGA------------------------------CAAGGAGAAGG------------------------ACAAAGATAA------GGAGAAG------GAAAAGGA------AAA------------AGAAAAAGAGAAGGA------------------GAAGGATCGACGCAGTGAGCACACAACCAAAAAGCAACACCAA---TTATCGTCGCCAACGT------------CTTCGCCGACACCAGCTAAAATGCCACGACTGACCAGCACC-AAT------TCAG---------------CAGCTACTGCTGCA---------------------------GC---------------TACCGT---TC-------------------------------------------CTGCTGCCAC---TCCTGCCCCATCTCTGCC------
droWil2 scf2_1100000004521:10990285-10990537 + CC---AAACCGAAGAAGGACAAGGAGAAGGA---------------------------------------------------------------AAAGGATAAAG------------------AAAGGGAAAA------------GATTAAGGAAAAGGAAAGAAACAA------------GGAAAAGGAGCGAAA------------------AGTAG------AAAATAA---TACGCCCAAAAAGAA------------------AGCAGAAAACTCAGTGACAACTGCACCAACTCCAGCAAAGGTTATACGTCTCACAAATGAC-G------------TCC------CATTAGT---------GGCAACT------CC------------CACAGTTGCTCCAACTTCCA---------CTGG---------AGCTCAACCCTTGCCCTTGCCT-------------------------------TTGCCTCTGCC------
droVir3 scaffold_13246:2457087-2457269 + CATGCAGCAAGGACAAAGAGAA------GTC------------------------CAA------------------------------TCGTGATAAAG------------------------ACAAAGATAA------GGATAAG------GAAAAGGAGCGCAGCAA------------AAAGTCGGAGCATAA------------------AACGGA---------------------------------------------------------------------TATGCCAACGCCAGCAAAAATACCGCGCCTGGCCAACGAA-T------------CAGTGGC--AAGTGC----------TGCGCCT------------GTCGCCCCACCAGC------------------AGCTGCCAC-------------------------------------------------------GC-------------CTC------
droMoj3 scaffold_6500:26534663-26534945 + CT---AATCGTGATAAAGACAAAGACAAAGA---------------------------CAAGGATAAAGATAAAGATAAAGAGAAAGCTATGGATAAGG------------------------ATAAGGACAA------------G------GACAAGAACAA------------------GGACAAGGACAAGGATAAGGATAAGGC------GCGTAACAAAAAGGTGGAGCATAAACC---AGAGCTG---------GCATCGC---------------------CTTCAGCTACGCCAGCTAAAGTGCCGCGTCTAGAAAACGAG-A------------CAGCCGTATCAATATT---------GGCAAGT------GG------------CACGTCCGTTACTGCTCCCAGTGCAGCTC----------------------------------------------CCCCAGTTCC---TCCAGTTCATGCTCCCCC------
droGri2 scaffold_15252:5904181-5904376 + TC---AAAAAGGACAAC---AACGAAAAGTC------------------------CAC------------------------------TCGTGATAAAG------------------------ATAAAGACAAAGATAAGGATAAG------GAAAAGGAGCGCATCAT------------CAAAAAAGAGACGAA------------------ATC---------------------------GGAGCAT------TCAGCAA---------------------------------CGCCAGTGAAAATGCCGCGACTGGCGGCTAACGAAGCCAGCA----TATCAAC--TAATGT----------GTCAAC---------------------------------------------TAA---TC-------------------------------------------CTAACCCTAA------------TCCTGTTCC------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TC---AAAAAGGATAAGGACAAGGAAAAGTC---------------------------------------------------------TAGGGAGAAGG------------------------ATAGAGATAA------------G------GTAAAGGAGCGAAGCAA------------AGAAAAGGAGAAGGA------------------AAAAGAAAAGAAAAACGA---AACTCCAAAAAAACAT---------GCAACGCCAGCAAAGA---GCTCTTTGAGTGAGCCCTCGCCCGCCAAAATTCCCAGATTAAATAATGAC-A------------CAGCTCC---------------------------------------------TGCAAC------------------TGCTCCTCC---------ACTGAAATCT------------A----CACCCTCATCTGCGCC---ACCTACTTGCACTCTTCC------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
TC---AAAAAGGATAAGGACAAGGAAAAGTC---------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
................................................................................................................................................................................................AGGA------------------AAAAGAAAAGAAAAACGA---AACTCCA.........................................................................................................................................................................................................................................................................2911.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................AATGAC-A------------CAGCTCC---------------------------------------------TGCAAC------------------T.......................................................................................2111.00100100000000000000
.............................................................................................................................................................GGAGCGAAGCAA------------AGAAAAGGAGAAG.........................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
...............................................................................................................................................................................................................................................................................AAAGA---GCTCTTTGAGTGAGCC....................................................................................................................................................................................................................2111.00100000000001000000
...........................................................................................................................ATAGAGATAA------------G------GTAAAGGAGC.........................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.............................TC---------------------------------------------------------TAGGGAGAAGG------------------------ATAGAGATAA------------G------GTA................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000001000
......................................................................................................................................................................................................................................................AACAT---------GCAACGCCAGCAAA.........................................................................................................................................................................................................................................1911.00100010000000000000
..............AAGGACAAGGAAAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
.........AGGATAAGGACAAGGAAAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................TTCCCAGATTAAATA.......................................................................................................................................................................................1520.50100000010000000000
droSec2
TC---AAAAAGGATAAGGACAAGGAAAAGTC---------------------------------------------------------TAGGGAGAAGG------------------------ATAGAGATAA------------G------GTAAAGGAGCGAAGCAA------------AGAAAAGGAGAAGGA------------------AAAAGAAAAGAAAAACGA---AACTCCAAAAAAACAT---------GCAACGCCAGCAAAGA---GCTCTTCGAGTGAGCCCTCGCCCGCCAAAATTCCCAGATTAAATAATGAC-A------------CAGCTCC---------------------------------------------TGCAAC------------------TGCTCCTCC---------ACTGAAATCT------------A----CACCCTCATCTGCGCC---ACCTACTTGCACTCTTCC------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................AGAGATAA------------G------GTAAAGGAGC.........................................................................................................................................................................................................................................................................................................................................................1911.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCT------------A----CACCCTCATCTGCGCC---........................2111.0010010
..............................C---------------------------------------------------------TAGGGAGAAGG------------------------ATAGAGATAA------------G------GT.................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.........................................................................................AGGGAGAAGG------------------------ATAGAGATAA------------G------...................................................................................................................................................................................................................................................................................................................................................................2111.0011000
............................................................................................................................................................................................................................................................................AGCAAAGA---GCTCTTCGAGT.........................................................................................................................................................................................................................1911.0010010
dm3
TC---AAAAAGGATAAGGACAAGGAAAAGTC---------------------------------------------------------TAGGGGGAAGG------------------------ATAGAGATAA------------G------GAAAAGGAACGAGGCAA------------GGAAAAGGAAAAGGA------------------AAAAGAAAAGAAAAACGA---TACTCCTAAAAAACAT---------GCAACGCCAGCAAAGA---GCTCTTTGAGTGAGCCCTCGCCCGCCAAAATTCCCAAATTAAATAATGAC-A------------CAGCTCC---------------------------------------------TGCAAC------------------TGCACTTCC---------ACTGAAATCT------------A----CACCCTCCTCTGCGCC---ACCTACGTGCACTCTTCC------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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droEre2
TA---AAAAAGGATAAAGAGAAGGAAAAGTC---------------------------------------------------------TAGGGAGAAGG------------------------ATAGAGACAA------------G------GAAAAGGAAAGAAGCAA------------AGAAAAGGAGAAGGA------------AAAAGAAAAAGAAAGGAAAATCGA---AACTCCGAAAAAACAT---------GCAACGCCAGCAAAGA---GCTCTTTGAGTGAGCCCTCGCCCGCCAAAATTCCCAGATTAAACAGTGAC-A------------CAGCTCC--CAATGC----------TTCAGAT------CCCACAGTTGTTGCTACAGC------------------AGCTCCTGC---------CCCAAAATCTATAGCC------A----CACCCCCTTCTGCACC---ACCTATTTGCACTATTCC------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........GATAAAGAGAAGGAAAAGTC---------------------------------------------------------TAGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000200
..................................................................................................................................CAA------------G------GAAAAGGAAAGAAGC....................................................................................................................................................................................................................................................................................................................................................1912.0020000110
.............................................................................................................................AGAGACAA------------G------GAAAAGGAAAG........................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..............................................................................................................................................................GAAAGAAGCAA------------AGAAAAGGA.............................................................................................................................................................................................................................................................................................................................2011.0011000000
.................GAGAAGGAAAAGTC---------------------------------------------------------TAGGGAGAAGG------------------------ATA.............................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.............................................................................................................................................................................................................................................................................................................................TTAAACAGTGAC-A------------CAGCT...............................................................................................................................................................1811.0010000010
.......................................................................................................................................................................................AAAAGGAGAAGGA------------AAAAGA.....................................................................................................................................................................................................................................................................................................1911.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC------A----CACCCCCTTCTGCACC---ACCTAT..................2511.0011000000
............................................................................................................................................................................................................................................................................AGCAAAGA---GCTCTTTGAGTG........................................................................................................................................................................................................................2011.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................AT------CCCACAGTTGTTGCTACA............................................................................................................2011.0011000000
....................................................................................................................................................................AGCAA------------AGAAAAGGAGAAGGA------------AAAAG......................................................................................................................................................................................................................................................................................................2511.0010000100
................................................................................................................................................................................................................................................................................................................................................................................TTCAGAT------CCCACAGTTGTT..................................................................................................................1911.0010000100
..............................................................................................................................................................................................................................................................................................................................TAAACAGTGAC-A------------CAGCTCC--CAATGC----------T..........................................................................................................................................2611.0011000000
............................................................................................................................TAGAGACAA------------G------GAAAAGGAAAGA.......................................................................................................................................................................................................................................................................................................................................................2211.0010000100
....................................................................................................................................................................................................................................................................................................................ATTCCCAGATTAAACAGTGA...................................................................................................................................................................................2011.0010000100
..............................................................................................................................................................GAAAGAAGCAA------------AGAAAAGG..............................................................................................................................................................................................................................................................................................................................1911.0010000100
..............AAAGAGAAGGAAAAGTC---------------------------------------------------------TAGGGAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.............................................................................................................................AGAGACAA------------G------GAAAAGGAAAGA.......................................................................................................................................................................................................................................................................................................................................................2111.0010000100
......................................................................................................................................................................................GAAAAGGAGAAGGA------------AAAAG......................................................................................................................................................................................................................................................................................................1911.0010000100
........................................................................................................................................................................A------------AGAAAAGGAGAAGGA------------AA.........................................................................................................................................................................................................................................................................................................1820.5010000100
.........................................................................................................................................................................................AAGGAGAAGGA------------AAAAGAA....................................................................................................................................................................................................................................................................................................1820.5010000100
.......................................................................................................................................................................AA------------AGAAAAGGAGAAGGA------------AA.........................................................................................................................................................................................................................................................................................................1920.5010100000
droYak3
TC---AAAAAGGATAAGGAGAAGGAAAAGTC---------------------------------------------------------TAGGGAGAAGG------------------------ATAGAGACAA------------G------GAAAAGGAAAGAAGCAA------------ACAAAAGGAGAAGGA------------GAAGGAAAAAGAAAAGAAAATCGA---AACTCCAAAAAAACAT---------GCAACGCCAGCAAAGA---GCTCTTTGAGTGAGCCATCGCCCGCCAAAATTCCCAGGCTAAACAATGAC-A------------CAGCTCC--CAATGC----------TTCAAAT------CCCACAATTGTTGCTAAGGC------------------AGCTGCTAC---------ACTGAAATCTATGGCC------A----CACCATCTTCTGCACC---ACCTATTTGCACTCTTCC------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................TAGAGACAA------------G------GAAAAGGAAAGAAGC....................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.............................................................................................................................AGAGACAA------------G------GAAAAGGAAAGAAGC....................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..................................................................................................G------------------------ATAGAGACAA------------G------GAAAA..............................................................................................................................................................................................................................................................................................................................................................1711.00100000000001
.....AAAAAGGATAAGGAGAAGGAAAAGTC---------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...........................................................................................................................................................................................................................................................................CAGCAAAGA---GCTCTTTGAGTGAGC.....................................................................................................................................................................................................................2411.00100000010000
.......................GAAAAGTC---------------------------------------------------------TAGGGAGAAGG------------------------ATAGAGA.........................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.......................................................................................................................................................................AA------------ACAAAAGGAGAAGGA------------GAA........................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................................................................................................................................................................................................................................................ACAT---------GCAACGCCAGCAAAG........................................................................................................................................................................................................................................1911.00100010000000
............ATAAGGAGAAGGAAAAGTC---------------------------------------------------------TAGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.....AAAAAGGATAAGGAGAAGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.C---AAAAAGGATAAGGAGAAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.......AAAGGATAAGGAGAAGGAAAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.........................................................................................................................................................................................................................................................................GCCAGCAAAGA---GCTCTTTGAGTGAGCC....................................................................................................................................................................................................................2711.00100000010000
....................................................................................................................................................................AGCAA------------ACAAAAGGAGAAGGA------------GAAGGA.....................................................................................................................................................................................................................................................................................................2611.00100000010000
.......................................................................................................................................................................AA------------ACAAAAGGAGAAGGA------------GAAGGA.....................................................................................................................................................................................................................................................................................................2311.00100000010000
........................................................................................................................................................................................AAAGGAGAAGGA------------GAAGGAA....................................................................................................................................................................................................................................................................................................1950.20100000010000
droEug1
CC---AAAAAGGAAAAGGAGAAAGAAAAGCC---------------------------------------------------------AAGGGAGAAGG------------------------ATAGAGATAA------------A------GATAAGGATAAAGACAAAGAAAAGGAGAAGGAAAAGGAAAAGGA------------------AAAGGAAAGGAGGAGCGA---AACTCCCAAAAAACAT---------TCAACACCAGCCAAGAGCTGTTCCATAAGCGAGCCTTCGCCAGCTAAAATTCCCCGTTTAAACAATGAT-G------------CATCTAC--CAATTC----------TCCTGTT------TCCGCAGTTGTTCCAAAAGC------------------TGCTCCTAC---------ACTTAAACCTGTACCTATTCCTATACC----CGCATGTGCACC---ACTT-----------ACC------SizeHit CountTotal NormTotal
No Reads
droBia1
CC---AAGAAGGATAAGGAGAAGGAAAAGAC---------------------------------------------------------AAGGGAGAAAG------------------------ATAGAGGTAA------------A------GAAAAGGAC------------------------AAAGAGAAGGA------------------AAAGGAAAAAAGAAGCGA---AACTCCGAAAAAGCAT---------TCAACGCCAGCCAAGAGTTGCTCCATAAGTGAGCCCTCACCTGCCAAAATTCCCCGTTTGAACAATGAC-A------------CAACTCC--CAGTTC----------TCTTGCT------CCCGCAGTCGTTCCCACAGC------------------TGCTTCTAC---------AGTCAAACCTATACCCAATCCTATACC----TGCATCTGCACC---AACTATTCCAACTCTCCC------SizeHit CountTotal NormTotal
No Reads
droTak1
CC---AAGAAGGATAAAGAGAAGGAAAAGTC---------------------------------------------------------AAGGGAGAAGG------------------------ATAGGGATAA------------G------GAAAA------------------------------------GGA------------------GAAGGAAAGGAGGAGCGA---GACTCCCAAGAAGCAC---------ACAACGCCAGCCAAGAGCAGCTCCATAAGCGAACCCTCGCCTGCCAAAATTCCTCGTCTCAGCAATGAC-A------------CAACTTC--CAGTTC----------ACCTGCTCCCATTCCCACAGTTGTTCCCACAGC------------------AGCTTCTA-------------------------------------------CTACTGCACC---ACCTATTCCCACACCACC------SizeHit CountTotal NormTotal
No Reads
droEle1
CC---AAGAAGGATAAGGAGAAGGAAAAGTC---------------------------------------------------------TAGGGA------------------------------------TAA------------A------GAAAGGGAAAAAGACAA------------GGAAAAGGAGAAGGA------------------CAAGGAACGAAGGAGCGAATCAACGCCCAAAAAGCAT---------ACTACGCCAGCCAAAACCTGCTCGATAAGTGAGCCTTCACCTGCCAAAATTCCCCGCTTAGGCAATGAC-G------------CAGTTAC--CAATCC----------TCCCGCT------CCTGCAGCTGTTTCTACAGC------------------TACTCCTACAGCTGCTGTACTCAAACCTGCACCCACACCTATATC----CGCTTCGGCACC---ACCTGTTCCAGCTCTGCC------SizeHit CountTotal NormTotal
No Reads
droRho1
CC---AAAAAGGATAAGGAGAAGGAAAAGTC---------------------------------------------------------CAGGGAGAAAG------------------------ATAGGGATAA------------A------GAAAGAGAAAGGGGCAA------------AGAAAAGGA------------------------GAAGGAGCGGAGGAGCGAACCAACGCCCAAAAAGCAT---------TCAACGCCAGCCAAAACCTGCTCCATAAATGAGCCTTCACCTGCCAAAATTCCCCGTTTGGGCAATGAC-A------------CAGCCCC--CAATTC----------TCCCGCT------CCTGTAGTTGTTCCTACAGC------------------TGCTCCTACAGCTTCTACACTCAAACCTTTACTCACACCTATAGC----CAAACCGGCACC---CCCTGTTCCCACTCTCCC------SizeHit CountTotal NormTotal
No Reads
droFic1
CC---AAAAAGGATAAGGATAAGGAAAAGAT---------------------------------------------------------TAGGGAGAAAG------------------------GTAGAGAAAA------------G------GAAAAGGAACGAGACAA------------AG------ACAAGGA------------------AAAAGAAAGGAGGAGTGAAGCAACGCCGAAGAAGCAT---------ACTGCACCAGCGAAGACTTCCTCCATAAGCGAGCCTTCGCCTGCTAAAATTCTCCGTTTAAGCAATGAC-A------------CGGCTCA--AAGTTC----------TCCATCT------------GTTGTTAACTCAGT------------------TGCGTCTAC---------ACCTAAACCTATACTTACACCCATATC----TGCTCCTGCACCACTGCCTGTTCCTACTCTTCC------SizeHit CountTotal NormTotal
No Reads
droKik1
AAAGAGAGAAGGATAAGGAAAGGGAGAAGGA---------------------------------------------------------TAAGGA---AA------------------------AGAAGGACAAAGAT------AAA------GAAAAGGAGAAAAAGGA---------TAAGGAAAAGGACTCGGA------------------GAAGGATAAGAGAAGCGACCACACGACCAAGAAGCAT------CCTGCAACGCCAGCCAAGACCTCAACCCTAAGTGCACCTTCGCCGGCCAAGATGCCACGCCTAAATAATGAA-G------------CAGCTCCTTCAAT------------ACCCACT------------CCCATCCCCACGCC------------------CACCCCTCT---------TC-------------------------------CAACTCCCAT---ACCCACTCCTGCCTCCTC------SizeHit CountTotal NormTotal
No Reads
droAna3
CC---AAAAAGAGTAAGGACAA------GTCAAGGGAGAAGGATAA---------AGAAAAGGAGAAGGA------------------AAAGGA---AA---AGGAGAAGTCAAAGTCAAAGGATAAAGATAA------GGAGAAG------GAAAAGGAAAAGATCAA------------GGAAAGAGAACAATATAAGGATAAGCA------GACGGACAAAAAGAGCGATAGCACGCCTAAGAAGCAC---------TTACCTTCAGCCAAGTCCTGCTCACTCAGTTCGCCTTCGCCTGCAAAAATCTCCCGGCTAACGAACGAT-G------------TACCTGC--TATTGC----------CTCAGCC----------------------------------------------------------------------------------------------TCAGCCGCAGC---ACCTGCTCCTCCTGCTCCAATAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................GGATAA---------AGAAAAGGAGAAGGA------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..........................................ATAA---------AGAAAAGGAGAAGGA------------------A..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.........................................................................................................................................................................................................................................................................TTCAGCCAAGTCCTGCTCACTCAGC.........................................................................................................................................................................................................................2511.001010000
........................................................................................................................................................................................................................CGGACAAAAAGAGCGATAG................................................................................................................................................................................................................................................................................1911.001000010
...........................................................................................................................................................AAGGAAAAGATCAA------------GGAAAGAGA.............................................................................................................................................................................................................................................................................................................................2311.001010000
....................................................................GA------------------AAAGGA---AA---AGGAGAAGT............................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
..............................................................................................................................................................................................................................................................................................................................TAACGAACGAT-G------------TACCTGC--C..........................................................................................................................................................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGC---ACCTGCTCCTCCTGC.........2111.001100000
...............................................................AGAAGGA------------------AAAGGA---AA---AGGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................2130.331000010
...............................................................AGAAGGA------------------AAAGGA---AA---AGGA.................................................................................................................................................................................................................................................................................................................................................................................................................1940.251000010
...........................................TAA---------AGAAAAGGAGAAGGG------------------G..................................................................................................................................................................................................................................................................................................................................................................................................................................19140.071000100
droBip1
CC---AAAAAA-ATAAGGAGAAATCAAGGGA------AAAGGAT---------------------------AAAGAAAAAGA------AAAGTCGAAGT------------------CTAAAGATAAGGATAA------------G------GAGAA------GATTAA------------GGAACGAGAGCAATATAAGGAAAAGCA------GACAGACAAAAAGAGCGATAACACACCTAAGAAGCAT---------TTAACTTCAGCAAAGACCTGCTCTCTCAGTTCGCCTTCGCCTGCCAAAATCTGCCGGCTAACGAACGAA-G------------TACCTGC--TATTGC----------CTCAGC----------------------------------------------------------------------------------------------------TGCAGC---ACCTGCTCCTCCAAATTC------SizeHit CountTotal NormTotal
No Reads
dp5
CC---AAAAAGGTGAAGGAAAAGGC---GTC---------------CAGCAAGTCGGA------------------------------CAAGGAGAAGG------------------------ACAAAGATAA------GGAGAAG------GAAAAGGA------AAA------------AGAAAAAGAGAAGGA------------------GAAGGATCGACGCAGTGAGCACACAACCAAAAAGCAACACCAA---TCATCGTCGCCAACGT------------CTTCGCCGACACCAGCTAAAATGCCACGACTGACCAGCACC-AAT------TCAG---------------CAGCTACTGCTGCA---------------------------GC---------------TACCGT---TC-------------------------------------------CTGCTGCCAC---TCCTGCCCCATCTCTGCC------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................GAAGG------------------------ACAAAGATAA------GGAGAAG------...................................................................................................................................................................................................................................................................................................................................................................2213.0030000000003
..........................................................................................................................................................................................AAGAGAAGGA------------------GAAGGATCGAC..........................................................................................................................................................................................................................................................................................2111.0011000000000
...........................................................................................................................................................................................................................................................................................................................GACTGACCAGCACC-AAT------TCAG---------------CA...................................................................................................................................................2311.0010100000000
.......................................................................................................................................................................................AAAAAGAGAAGGA------------------GAAGGATC.............................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................AGAAGG------------------------ACAAAGATAA------GGAGAAG------GAA................................................................................................................................................................................................................................................................................................................................................................2611.0010000000010
...........................................................................................................................................................................................AGAGAAGGA------------------GAAGGATCG............................................................................................................................................................................................................................................................................................1811.0010000100000
..............................................................................................................................................................................................................................................................CAA---TCATCGTCGCCAACGT------------CT.........................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................AG------GAAAAGGA------AAA------------AGAAAA................................................................................................................................................................................................................................................................................................................................1930.3310100000000
....................................................................................................................................A------GGAGAAG------GAAAAGGA------AA...................................................................................................................................................................................................................................................................................................................................................1850.2010100000000
droPer2
CC---AAAAAGGTGAAGGAAAAGGC---GTC---------------CAGCAAGTCGGA------------------------------CAAGGAGAAGG------------------------ACAAAGATAA------GGAGAAG------GAAAAGGA------AAA------------AGAAAAAGAGAAGGA------------------GAAGGATCGACGCAGTGAGCACACAACCAAAAAGCAACACCAA---TTATCGTCGCCAACGT------------CTTCGCCGACACCAGCTAAAATGCCACGACTGACCAGCACC-AAT------TCAG---------------CAGCTACTGCTGCA---------------------------GC---------------TACCGT---TC-------------------------------------------CTGCTGCCAC---TCCTGCCCCATCTCTGCC------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................CGGA------------------------------CAAGGAGAAGG------------------------ACAAAG..........................................................................................................................................................................................................................................................................................................................................................................................2114.004400000
.........................................................................................AAGGAGAAGG------------------------ACAAAGATAA------GGA.............................................................................................................................................................................................................................................................................................................................................................................2312.002200000
.........................................................................................................................................................................................................................................................AACACCAA---TTATCGTCGC.............................................................................................................................................................................................................................................1812.002200000
.........................................................................................................................................................................................................................................................AACACCAA---TTATCGTCGCCAAC.........................................................................................................................................................................................................................................2212.002200000
........................C---GTC---------------CAGCAAGTCGGA------------------------------CAAGGAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
..............................................................................................................................................................................................GAAGGA------------------GAAGGATCGACGCAGTGAG..................................................................................................................................................................................................................................................................................2511.001100000
....................................................................................................................................................................................................................................................................................................GCCGACACCAGCTAAAATGCCACG...............................................................................................................................................................................................2411.001010000
..............................................................................................GAAGG------------------------ACAAAGATAA------GGAGAAG------GA.................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..........................................................................................................................................................................................................................GATCGACGCAGTGAGCACAC.............................................................................................................................................................................................................................................................................2011.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................C---------------TACCGT---TC-------------------------------------------CTGCTGCCAC---TCCTGCCCC...............2811.001100000
...............................................................................................................................AGATAA------GGAGAAG------GAAAAGGA------.....................................................................................................................................................................................................................................................................................................................................................2111.001001000
........................................................................................................................................................GAAAAGGA------AAA------------AGAAAAAGA.............................................................................................................................................................................................................................................................................................................................2020.501001000
droWil2
CC---AAACCGAAGAAGGACAAGGAGAAGGA---------------------------------------------------------------AAAGGATAAAG------------------AAAGGGAAAA------------GATTAAGGAAAAGGAAAGAAACAA------------GGAAAAGGAGCGAAA------------------AGTAG------AAAATAA---TACGCCCAAAAAGAA------------------AGCAGAAAACTCAGTGACAACTGCACCAACTCCAGCAAAGGTTATACGTCTCACAAATGAC-G------------TCC------CATTAGT---------GGCAACT------CC------------CACAGTTGCTCCAACTTCCA---------CTGG---------AGCTCAACCCTTGCCCTTGCCT-------------------------------TTGCCTCTGCC------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................GACAAGGAGAAGGA---------------------------------------------------------------AAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................2024.00800620
....................................................................................................................................................................................................................................................................................................................................ATGAC-G------------TCC------CATTAGT---------GGCAACT------CC------------CAC.............................................................................................................2811.00110000
......................................................................................................................................................................................................................................AA---TACGCCCAAAAAGAA------------------AGCAGA.........................................................................................................................................................................................................................................2311.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCA---------CTGG---------AGCTCAACCCTTGCCC......................................................2611.00101000
.....AAACCGAAGAAGGACAAGGAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.................................................................................................................................................................AGAAACAA------------GGAAAAGGAGC...........................................................................................................................................................................................................................................................................................................................1911.00100100
..........................AAGGA---------------------------------------------------------------AAAGGATAAAG------------------AAAGGGAAAA------------GA........................................................................................................................................................................................................................................................................................................................................................................2811.00100100
.....................................................................................................................................................................................................................................................AAGAA------------------AGCAGAAAACTCAGTGACAAC..........................................................................................................................................................................................................................2611.00100001
..................................................................................................................................................................GAAACAA------------GGAAAAGGAGCGAA........................................................................................................................................................................................................................................................................................................................2111.00100100
....................................................................................................................................................TAAGGAAAAGGAAAGAAACAA------------GGA...................................................................................................................................................................................................................................................................................................................................2411.00100100
........................................................................................................................................................................................AAAGGAGCGAAA------------------AGTAG------A.........................................................................................................................................................................................................................................................................................1811.00100010
CC---AAACCGAAGAAGGACAAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.............................................................................................................................................................................................................................................................................................................................CTCACAAATGAC-G------------TCC------CATTAGT---------...........................................................................................................................................2311.00101000
..............................A---------------------------------------------------------------AAAGGATAAAG------------------AAAGGGA.........................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
......................................................................................................................................................................CAA------------GGAAAAGGAGCGAAA------------------AGTAG------..........................................................................................................................................................................................................................................................................................2311.00100100
...................CAAGGAGAAGGA---------------------------------------------------------------AAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................1830.67200020
.............GAAGGACAAGGAGAAGGA---------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100100
droVir3
CATGCAGCAAGGACAAAGAGAA------GTC------------------------CAA------------------------------TCGTGATAAAG------------------------ACAAAGATAA------GGATAAG------GAAAAGGAGCGCAGCAA------------AAAGTCGGAGCATAA------------------AACGGA---------------------------------------------------------------------TATGCCAACGCCAGCAAAAATACCGCGCCTGGCCAACGAA-T------------CAGTGGC--AAGTGC----------TGCGCCT------------GTCGCCCCACCAGC------------------AGCTGCCAC-------------------------------------------------------GC-------------CTC------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................ACGAA-T------------CAGTGGC--AAGTGC----------TG.........................................................................................................................................2115.005000000001000000000010200001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................GC--AAGTGC----------TGCGCCT------------GTCGCC..................................................................................................................2112.002001000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................GAGCATAA------------------AACGGA---------------------------------------------------------------------TATG......................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................A------------AAAGTCGGAGCATAA------------------AACGG................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
........................................................................................................................................................................................................................................................................................................................................................AGTGGC--AAGTGC----------TGCGCCT------------GTC.....................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................GC--AAGTGC----------TGCGCCT------------GTCGCCT.................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CAACGCCAGCAAAAATACCGC................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................AAAAGGAGCGCAGCAA------------AAAG..................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................ACAAAGATAA------GGATAAG------GA.................................................................................................................................................................................................................................................................................................................................................................1911.001000010000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................ATAA------------------AACGGA---------------------------------------------------------------------TATGCCAACGCC..............................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................CATAA------------------AACGGA---------------------------------------------------------------------TATGCCAACG................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TAA------GGATAAG------GAAAAGGAGC.........................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................ACGGA---------------------------------------------------------------------TATGCCAACGCC..............................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................................................................................................................................................................................GGC--AAGTGC----------TGCGCCT------------GTCT....................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................AA-T------------CAGTGGC--AAGTGC----------TGCGC......................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................A------GGATAAG------GAAAAGGAGCGC.......................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................TAAAG------------------------ACAAAGATAA------GGATAA..........................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................CAGCAAAAATACCGCGCCTGG..........................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................AGTGGC--AAGTGC----------TGCGCCT------------GTCG....................................................................................................................2311.001000000010000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TCGCCCCACCAGC------------------AGCTGCCA................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CAGTGGC--AAGTGC----------TGCGCCT------------G.......................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CCT------------GTCGCCCCACCAGC------------------AGCT....................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................AA------GGATAAG------GAAAAGGAGCGCTT.....................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................C--AAGTGC----------TGCGCCT------------GTCGCCC.................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGATAA------GGATAAG------GAAAAGG............................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.....................A------GTC------------------------CAA------------------------------TCGTGATAAAG------------------------AC..............................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................AA------GGATAAG------GAAAAGGAGCGC.......................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................GC----------TGCGCCT------------GTCGCCCCACCA............................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................A-T------------CAGTGGC--AAGTGC----------TGCGC......................................................................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
............................................................................................................................................GATAAG------GAAAAGGAGCGCAGC....................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
......GCAAGGACAAAGAGAA------GTC------------------------CAA------------------------------TC.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ACGCCAGCAAAAATACCGCGC..............................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................ATAA------GGATAAG------GAAAAGGAGC.........................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................AG------GAAAAGGAGCGCAGCAA------------AA....................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................CAAAGATAA------GGATAAG------GAAAA..............................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
droMoj3
CT---AATCGTGATAAAGACAAAGACAAAGA---------------------------CAAGGATAAAGATAAAGATAAAGAGAAAGCTATGGATAAGG------------------------ATAAGGACAA------------G------GACAAGAACAA------------------GGACAAGGACAAGGATAAGGATAAGGC------GCGTAACAAAAAGGTGGAGCATAAACC---AGAGCTG---------GCATCGC---------------------CTTCAGCTACGCCAGCTAAAGTGCCGCGTCTAGAAAACGAG-A------------CAGCCGTATCAATATT---------GGCAAGT------GG------------CACGTCCGTTACTGCTCCCAGTGCAGCTC----------------------------------------------CCCCAGTTCC---TCCAGTTCATGCTCCCCC------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................AGCTAAAGTGCCGCGTCTAGA.........................................................................................................................................................................................2111.001100000
..........................................................................................................................................................................................................................................................G---------GCATCGC---------------------CTTCAGCTACGC...............................................................................................................................................................................................................2011.001100000
............................................................................................................................................................................................................AGGC------GCGTAACAAAAAGGTGG....................................................................................................................................................................................................................................................................................2111.001000100
.......................................................................................................................................................................................................................................................................................................TACGCCAGCTAAAGTGCCGCG...............................................................................................................................................................................................2111.001100000
........................................................................................................................................................................................................................................................................................................................................G-A------------CAGCCGTATCAATATT---------GGCAAGT------GG------------C...............................................................................................................2811.001100000
...........................................................................................................................................................................................................................................................................................................................................................CGTATCAATATT---------GGCAAGT------G.............................................................................................................................2011.001000001
..........................................................................................................................................................................................................................................................................................................................................A------------CAGCCGTATCAATATT---------GGCAAGT------G.............................................................................................................................2511.001100000
....................................................................................................................................................................................................................................................AGAGCTG---------GCATCGC---------------------CTTCAGCT...................................................................................................................................................................................................................2211.001100000
.....................................................................................................................................................................................................................................................................CATCGC---------------------CTTCAGCTACGCC..............................................................................................................................................................................................................1911.001100000
................................................................................................................................................................CAA------------------GGACAAGGACAAGGATAAGGAT................................................................................................................................................................................................................................................................................................................2520.501000100
droGri2
TC---AAAAAGGACAAC---AACGAAAAGTC------------------------CAC------------------------------TCGTGATAAAG------------------------ATAAAGACAAAGATAAGGATAAG------GAAAAGGAGCGCATCAT------------CAAAAAAGAGACGAA------------------ATC---------------------------GGAGCAT------TCAGCAA---------------------------------CGCCAGTGAAAATGCCGCGACTGGCGGCTAACGAAGCCAGCA----TATCAAC--TAATGT----------GTCAAC---------------------------------------------TAA---TC-------------------------------------------CTAACCCTAA------------TCCTGTTCC------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................CAGCAA---------------------------------CGCCAGTGAAAATG....................................................................................................................................................................................................2011.00110
...............................................................................................................................................AAG------GAAAAGGAGCGCATCAT------------C.....................................................................................................................................................................................................................................................................................................................................2111.00110

Generated: 05/19/2015 at 11:37 AM