ID:dsi_11812 |
Coordinate:3r:4208867-4209016 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
CDS [3r_4209017_4209365_+]; exon [3r_4209017_4209365_+]; intron [3r_4208508_4209016_+]
No Repeatable elements found
| --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATGTATATAACAACACAATATTTGGTTTGTTATTCAACAAAAAATTAGTTTTTTAAATACATTTACTTAAAGGGAAACATTCCACAGCTGATAAGAGTATCTGATCTTTAGCAACCAGAAGTCACATATTTTCTCTTTTGTACATAAGTCTGTAGCCCAGTGCACGTTGCACTAACTTTCTCCCGCCTTTCCTTTTGCAGGTGTTCAGAAACTAATGGTTCACGGCACTTCGGTCAAATCGAGCAAGGAA **************************************************.................((((((((((.........(((((..(((........))))))))...((((((.............))))))((((......))))....((((((...))))))..............))))))))))...************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | O001 Testis |
SRR618934 dsim w501 ovaries |
SRR902008 ovaries |
SRR553485 Chicharo_3 day-old ovaries |
M053 female body |
SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................................................................................................CTAATGGTTCACGGCACTTCG.................. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................ATCTGATCGTTGGCAACCAG.................................................................................................................................... | 20 | 2 | 2 | 1.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................GGTGTTCAGAAACTAATGGT............................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................TTCAGAAACTAATGGTTCACGGCA....................... | 24 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .........................................AAATTAGTTTTTTAAA................................................................................................................................................................................................. | 16 | 0 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..................................................................................................ATCTGATCGTTGGCAACCAGCA.................................................................................................................................. | 22 | 3 | 4 | 0.25 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................GTCATATCGAGCAAGGTA | 18 | 2 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...............................................................................................................................ATTTTCTGTTTTGTGCATAGGT..................................................................................................... | 22 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...........................................................................................................................................................CCCAGTGCACGTTCC................................................................................ | 15 | 1 | 8 | 0.13 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................TTTCTCCCGCCTGTC........................................................... | 15 | 1 | 15 | 0.07 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................GTCTGTAGCTCAGTGGA...................................................................................... | 17 | 2 | 15 | 0.07 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...........................................ATTAGTTTTTTAGATA............................................................................................................................................................................................... | 16 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................ATTAGTTTTTTAAAGA............................................................................................................................................................................................... | 16 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .........................................AAATTAGTTTTTTAGCTA............................................................................................................................................................................................... | 18 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................AGTCTGTAGCTCAGT......................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
|
TACATATATTGTTGTGTTATAAACCAAACAATAAGTTGTTTTTTAATCAAAAAATTTATGTAAATGAATTTCCCTTTGTAAGGTGTCGACTATTCTCATAGACTAGAAATCGTTGGTCTTCAGTGTATAAAAGAGAAAACATGTATTCAGACATCGGGTCACGTGCAACGTGATTGAAAGAGGGCGGAAAGGAAAACGTCCACAAGTCTTTGATTACCAAGTGCCGTGAAGCCAGTTTAGCTCGTTCCTT
**************************************************.................((((((((((.........(((((..(((........))))))))...((((((.............))))))((((......))))....((((((...))))))..............))))))))))...************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
SRR553487 NRT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................................................................TGAAGCCAGTCTATCTCGTTACT. | 23 | 3 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 |
| ......................................................................................................................................................................................................TCCACAAGTCTTTGATTACCA............................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................CAAGTCTTTGATTACCAAGTGCCGT....................... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................ACCAAGTGCCGTGAAGCCAGT.............. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ....................................................................................................................................................................................AGGGCGGGAAGGACAACGTCAA................................................ | 22 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................CCCTGTGTTAGGTGTCGGCT............................................................................................................................................................... | 20 | 3 | 8 | 0.38 | 3 | 0 | 3 | 0 | 0 | 0 |
| .ACATGTATTGTTCTGTTA....................................................................................................................................................................................................................................... | 18 | 2 | 5 | 0.20 | 1 | 0 | 0 | 0 | 1 | 0 |
| .......................................................................................................TAGAAATAGTTGGTCTTA................................................................................................................................. | 18 | 2 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 1 |
| ................................................AAAAAAATTATGTTAATGAA...................................................................................................................................................................................... | 20 | 2 | 15 | 0.07 | 1 | 0 | 0 | 1 | 0 | 0 |
| .....ATATTGTTGTGTTGT...................................................................................................................................................................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 |
Generated: 04/23/2015 at 11:11 PM