ID:

dsi_11773

 Coordinate:

3r:5855322-5855471 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.2 -3.8 -3.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGGGGGGCGAGAGCGAGGGGCGTGAGCTGGGAAATTTCGGCGTAATTGAGTGGCTTATTGACTTGGGGCATATTTGTAGTACGAATTACACACATATTTGTATGTGTGTGTTTTAGCCGCCCTTGTCATATTTGACCAGAGCTGAAGAGAGAAAACGAAATAATAAACGTAGAATCCTGTCGAACCGGTTTTATAAATAGATAAGCGCATAAAAACAACGTTCATTACGCAAGAATGTGCCCTAAAACGA
***********************************************************************************************************************************..((((........((.((....(((..........)))....))))........))))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 O002
Head
 SRR553488
RT_0-2 hours eggs
...................................................................................................................................................................TAAACGTAGAATCCTGTCGAACCGGTT............................................................ 27 0 1 3.00 3 1 2 0 0 0 0 0 0 0
...................................................................................................................................TTGACCAGAGCTGAAGAGAGAAAACGA............................................................................................ 27 0 1 2.00 2 0 0 0 2 0 0 0 0 0
.....................................................................................................................................................................AACGTAGAATCCTGTCGAACCGGTT............................................................ 25 0 1 2.00 2 0 1 0 0 0 0 1 0 0
...........................TGGGAAATTTCGGCGTAATTGAGTGGC.................................................................................................................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.........................................................TTGACTTGGGGCATATTTGTAGTACGAA..................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................TTGACTAGAGCTGAAG....................................................................................................... 16 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................TGACTTGGGGCATATTTGTAGTACGAAT.................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................................................TTGGCGCATATTTGTAGTACGAATT................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................ACCAGAGCTGAAGAGAGAAAACGAAA.......................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................TGACTTGGGGCATATTTGTAGTACGAA..................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................TTGGGGCATATTTGTAGTACGAAT.................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................GTAGTACGAATTACA................................................................................................................................................................ 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................TCCTGTCGAACCGGTTTTATAAATAG.................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................ACGAATTACACACATATT........................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0
...........................................................................................................................TGTCATATTTGACCAGAGCTGAAGAGAGA.................................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................CATTACGCAAGAATGTGCCCTAAAACGA 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................TGTTTTAGCCGCCCTTGTCATATTTGAA.................................................................................................................. 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................TGGGGCATATTTGTAGTACGAATTACAC............................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................TAATAAACGTAGAATCCTGTCGAACCGGTT............................................................ 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................TGTCATATTTGACCAGAGCTGAAGAGA.................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................AACGTAGAATCCTGTCGAACCGGTTT........................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................CGTTCAGTACGCGAGAA............... 17 2 4 1.00 4 4 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AACATAGAATCCTGTCGAACCGGTT............................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................TTTGACTAGAGCTGAAG....................................................................................................... 17 1 1 1.00 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................CGTTCAGTACGCGAGA................ 16 2 16 0.69 11 11 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTTCAGTACGCGAGAA............... 16 2 18 0.56 10 10 0 0 0 0 0 0 0 0
................AGGGCGTGAGTTGGGCAATTT..................................................................................................................................................................................................................... 21 3 5 0.40 2 0 0 0 0 2 0 0 0 0
.......................................................................................ACACACATTTTTGGAAGTGTGTG............................................................................................................................................ 23 3 3 0.33 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................TCGTTCATTACGCGAGA................ 17 2 5 0.20 1 1 0 0 0 0 0 0 0 0
.GGGGGGCGAGAGGGAG......................................................................................................................................................................................................................................... 16 1 7 0.14 1 0 0 0 0 1 0 0 0 0
..........GAGCGAGGGGCGTTAGACG............................................................................................................................................................................................................................. 19 3 10 0.10 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................ATCGTTCAGTACGCGAGA................ 18 3 20 0.10 2 2 0 0 0 0 0 0 0 0
...........................................................................GTAGTACTAATTACCC............................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 0 0 0 2
TGGGGGGCGAGAGGGAGA........................................................................................................................................................................................................................................ 18 2 12 0.08 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................TTGACTAGAGCTGAAGC...................................................................................................... 17 2 18 0.06 1 0 0 1 0 0 0 0 0 0
........................................................................................................TGTGTGTTTTAGCGG................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................GAGCTGATTAGAGAAAA............................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

ACCCCCCGCTCTCGCTCCCCGCACTCGACCCTTTAAAGCCGCATTAACTCACCGAATAACTGAACCCCGTATAAACATCATGCTTAATGTGTGTATAAACATACACACACAAAATCGGCGGGAACAGTATAAACTGGTCTCGACTTCTCTCTTTTGCTTTATTATTTGCATCTTAGGACAGCTTGGCCAAAATATTTATCTATTCGCGTATTTTTGTTGCAAGTAATGCGTTCTTACACGGGATTTTGCT
************************************************************..((((........((.((....(((..........)))....))))........))))*********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
...............................................................................................................................................................................................................GTATTTTTGTTGCAGGTAATT...................... 21 2 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................TTTTTGTTGGAAGTACTGCGT................... 21 2 1 1.00 1 0 1 0 0 0 0 0
...........TCGCTGCCCGCCCTCGACCC........................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0
................CCCCCCGCTCGACCCTTTA....................................................................................................................................................................................................................... 19 2 4 0.75 3 0 0 0 2 1 0 0
................................................................................................................................................................................................TATTTATCTATTCGCATA........................................ 18 1 2 0.50 1 1 0 0 0 0 0 0
....................................................CGAATTACTGCAGCCCGTATA................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 1 0
.............................................................................................................................................GACTTTTCTCTTTAGCTTTGT........................................................................................ 21 3 20 0.10 2 0 0 0 0 2 0 0
..............................................................................................................................................................................................................................GTAATGCGTCCTTACG............ 16 2 20 0.10 2 2 0 0 0 0 0 0
......................................................................................ATGTGTGTATAAACATAT.................................................................................................................................................. 18 1 15 0.07 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................GCAAGTCATGCGCTCT................ 16 2 16 0.06 1 0 0 0 0 0 0 1
..................ACGCACTAGACCCTTT........................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1
............................................................................................................................................................................................AAAATAGTTATCTATT.............................................. 16 1 20 0.05 1 0 0 0 0 0 0 1
................CCCCCCGCTCGACCCTTTAC...................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0 0
............................................................................................................................................................................TCAGAACAGCTTTGCCAAA........................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0
...............................................................................................................AAATGGGCGCGAACAG........................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:5855272-5855521 - dsi_11773 TGGGGGGCGAGAG-------CGA---GGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACACAC--A--TATTTGT------------------------------------------------------ATG-TGTGTGTT------TTAGCCG---------------------------------------------------------C-CCTTGTCATATTTGACCAGAGC--T--G--A----AGAGAG----------------------AAAAC-----------------GAAATAATAAACGT------------------AGAATCCTGTCGAACCGGTTT-TATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droSec2 scaffold_25:365734-365981 - TGGGGCGCGA--G-------CGA---GGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACACAC--A--TATTTGT------------------------------------------------------ATG-TGTGTGTT------TTAGCCG---------------------------------------------------------C-CCTTGTCATATTTGACCAGAGC--T--G--A----AGAGAG----------------------AAAAC-----------------GAAATAATAAACGT------------------AGAATCCTGTCGAACCGGTTT-TATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
dm3 chr3R:15410756-15411012 + TGGGGGGCGA--G-------CGA---GGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACACAC--ATATATTTGT----A--------T------------------------------------GTGCGTGCTGTGTGTT------TCGGCCG---------------------------------------------------------C-CCTTGTCATATTTGACCCGAGC--A--G--A----AGAGAG----------------------AAAAC-----------------GGAATTATAAACGT------------------AGAATCCTGTCGAACCGGTTT-TATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droEre2 scaffold_4770:6229471-6229719 - GGGCGGG--A--GCGAGGGGCGA---GGGGCGTG---GGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACACAC--A--TATTTGT-----------------------------------------------------------GTGCGCT------TCAGCCG---------------------------------------------------------C-CTTTGTCATTTTTGACCGGAGC--T--G--G----GGAGAG----------------------AAAAC-----------------GCAATCACAAGCCT------------------AGAATCCTGTCGAACCGGTTT-TATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droYak3 v2_chr3R_random_369:2436-2691 + TGGGAGG-GA--G-------CGA---GGGGCTTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACACAC--A--TATTTGT----G--------T------------------------------------GTGTGTG-TGTGTGTT------TTAGCCG---------------------------------------------------------C-CTTTGTCATTTTTGACCAGAGC--T--G--A----AGAGAG----------------------AAAAC-----------------GGAATAATAAACGT------------------AGAATCCTGTCGAACCGGTTT-TATAAATAGATAAGCG-CATAAAAAA-----------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droEug1 scf7180000409804:1697967-1698232 + CGTGGGGGAG--G-------TGA---AGGGCTTG---A-CTTGGA-ATTTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG-CATA-------CATATTTGT--ACTAAGAAT------------------------------TACACACACA--CATAAACACATA--------T------------------------------------ATATATG-TATGTATT------TGAATCG---------------------------------------------------------C-TTTTGTCATATTTGCCTAGAAA--T--A--A--AGAGAGAG----------------------AAAAC-----------------GGAATAATAAACGC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droBia1 scf7180000302402:1184492-1184740 + GGCGGGGGTT--GGGAGG-GCGA---AGAGGGTGTGTAGCTGGGA-ATTTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACACAC--GCATATTTGT--------------------------------------------------------------------------AAACG---------------------------------------------------------C-CTTTGTCATATTTGCCCAGAAA--C--A--A--AGAGAGAG----------------------AAGAC-----------------GTAATAATAAACGC------------------AGAATCCTGTCGAACCGGTTTATAAAAATAGATAAGCG-CATAAA--------------------------GACCA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droTak1 scf7180000415710:421773-422047 - TGGGGAGGGA--G-GAAGCCAGA---AGGGCGTG--GAGCTGGGA-ATTTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AATACGAAT------------------------------TACACACACACATATTTGT-----------------------------------------------------------A----TTTGAGTTCTAAACG---------------------------------------------------------C-TTTTGTCATATTTGCCCAGAAA--T--A--AACAGAGAGAG----------------------AAAAC----TGAAAATGAAAATGCAATAATAAACGC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droEle1 scf7180000486474:29086-29378 + TGGGGG-CGA----------CGA---AGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACGCAC--A--TATTTGTGCGTGTGTGTGTGTGTGTGTGTGTGTTT--------GCCAGTATTTGTGTGTGTATG-TATGTGTT------TGAGCCG---------------------------------------------------------C-TTTTGTCATATTTGCCCAGAAA--T--A--A----AGAGAG----------------------AAAAC-----------------GGAATAATAAACGC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droRho1 scf7180000779431:29190-29448 - AGGGA--CGA----------CGA---AGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACGCAC--A--TATTTGT----G--------TG----------TT-------------TGCCA-----GTGTGTG-TATGTGTT------TGAGCCG---------------------------------------------------------C-CTTTGTCATATTTGCCCAGAAA--T--A--A----AGAGAG----------------------AAAAC-----------------GGAATAATAAACGC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAA---------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droFic1 scf7180000454126:402214-402479 + GGAGGGGCGG--G-------CGA---GGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--TGTACGAAT------------------------------TACACAC--A--TATTTGT----G--------TG----------CT-------------CGCCTCGCC--AGAATG-TGTGTATT------TGAGCCG---------------------------------------------------------C-TTTTGTCATATTTGCCCAGAAA--T--A--G----AGAGAG----------------------AAAAC-----------------GGAATATTAAAGGC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAAA--------------------------GACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droKik1 scf7180000302666:209458-209730 - AGGGGGGCAC--G-----CAAGG---GGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTCGG----CCTTG---------CATATTTGT--AGTGGGAAT------------------------------TACACAC--A--AAT-CGTACGTG--------T-------------------------AGTATTTGTGTGTACATC--------A------TGGGACG---------------------------------------------------------C-CTTTGTCATATTCGGCCAGAAAGGAGAA--A--AGGGAGAG----------------------AAAAC-----------------GGAATAATAAACGC------------------TGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droAna3 scaffold_13340:14988946-14989162 - TGGGGGA--T--GGGATGTCTAA---AGGGCGTG---AGCTGGGA--ATTTCGGCGTAATTTAGTGGCTTATTGACTCT---------------------------------CC-AAA------------------------------CACACAC--A------------------------------------------------------------------------------------ATCG---------------------------------------------------------CACTTTGTCATATTTGCCCAGCGT--A--G--A----AGAGAG----------------------AAAAC-----------------GGAATAATAAACAC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droBip1 scf7180000395971:197092-197311 + TGGGTGGG-G--GGGCCGCCCGA--AAGGGCGTG---AGCTGGGA--ATTTCGGCGTAATTTAGTGGCTTATTGACTCT---------------------------------CC-AAA------------------------------CACACAC--A--CAAT--------------------------------------------------------------------------------CG---------------------------------------------------------CATTTTGTCATATTTGCCCAGCGC-----G--A----AGAGAG----------------------AAAAC-----------------GGAATAATAAACAC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATCAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
dp5 2:29919723-29920054 + GG-----------------------------------------AA-AATTTCGGCGTAATGGAGTGGCTTATTGACTCGC----GT-CACACATTTGAAGTATTTGT--TGAAGT-AT------------------------------TTC---C--TTGTATTTGT----------------------------------------------------ATTTG-TATTTG---------------TTT--GGGTATTCAAAGGCCCCAAGCGGTGTGGGGTGGTGTGGGGCGTGCCG-----C---ATGTCATATTTGCAAAGAAA--A--A--TCAAGTGAAAT---------------CAAGTGAAGAACGTACT--------------AAAAATAATCCCAAATGTAAAAGAGTGAAGCGAATCCTGTGTAACCGGTTCTTATAAATAGATAAACGACACAGAGAAGATCTGAGGAGCGCAGAGAACGCAGCCC-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droPer2 scaffold_6:5288813-5289138 + GG-----------------------------------------AA-AATTTCGGCGTAATGTAGTGGCTTATTGACTCGC----GT-CACACATTTGAAGTATTTGT--TGAAGT-GT------------------------------TTC---C--TT----------------------------------------------------------GTATTTG-TATTTG---------------TTT--GGGTATTCATAGGCCCCAAGCGGTGTGGGGTGGTGTGGGGCGTGCCG-----C---ATGTCATATTTGCAAAGAAA--A--A--TCAAGTGAAAT---------------CAAGTGAAAAACGTACT--------------AAAAATAATCCCAAATGTAAAAGAGTGAAGTGAATCCTGTGTAACCGGTTCTTATAAATAGATAAACGACACAGAGAAGATCTGAGGAGCGCAGAGAACGCAGCCC-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droWil2 scf2_1100000004943:4243288-4243596 + TGGAGTGGGA--T-----AGAGTGGAGCATAGCG---AGTCGGGAAAATTTCGGCGTAATTGAGTGGCTTATTTGCTTAA----GT-GA---------AATATTTGTTTAGTTTGCCTAATGCCATCACCTATTTGAGTAAATGTATGTACATAC--A--TATGTAC--ATA--------T--------------------------------------ATATT-------CTTAAATTATAATCGTTT--TTTCATTC-----------------------------------ACATT-----------------ATGTTCGGGAA--T--A--T----AGAAATACATAGTTTAAGAATCGA-----T--C--------AGTGA-GCTTC--------AGTA------------------AGAATCCTGTTGAACCGGTTTCTAAAAATAGATAAAT-------A--------------------------AGCAACCTTCCATTACGCAAGAATGTGCCCTAAAACGA
droVir3 scaffold_13047:16176568-16176832 - AGGGCGG-------------------GGGGC-------CCTGAGA-AATTTCGGCGTAATTGAGTGGCTTATTTGCTTCG----TC-----------------------------GAT------------TACATATGTATATATATATATATAC--A--TATGAGC--ATA--------TATATACTTGTAGTTAAAGAGGAACTT----------GTAGTTG-TAGTTG---------------TTC--GGCTATTT-----------------------------------GCCTAATG---CGTTGCCATATTTGTCCAGCTA--A--AAAGTAAGTAAAAG----------------------GAAAC-----------------GAAA----------------------------ACAATCCTGTCTAACCGGTCCATAAAAATAGA------------------------------------------AA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droMoj3 scaffold_6540:12492093-12492309 - ACAGCG-CGG--G-------C-------AG-------CCCTGAGAAATTTTCGGCGTAATTGAGTGGCTTATTTGAGCCGTCGA---TGCG-------CGAGTGTGC--AGTGT-------------------------------------------------------------------------------------------------------GTAGTTG-TTTTTG---------------TTCTTAGCTGTTT-----------------------------------GCCTAATG---CCTTGCCATATTTGTCCAGTAT-----A--G----TTAAAG----------------------GAAAC-----------------GC----------CA------------------GCAATCCTGTCTAACCGGTCTGTAAAAATAGA------------------------------------------AG-CGTTCATTACGCAAGAATGTGCCCTAAAACGA
droGri2 scaffold_15116:1048342-1048578 - ---------------------------------------CTGAGA-AATTTCGGCGTAATTGAGTGGCTTATTTGCACCGTCGA---T---------------T----------AATT------------------------------TCCACAA--A--CATGGAT----G--------TG----------TT-------------CTCTTTATGTGTATTTG-TAGTTG---------------TTT--GACCATTT-----------------------------------GCCTAATGCC-CGTTGCTATATTGATCCAGCAAG------------CTAACT---------------AA-----------TAAT--------------AAAAAAAAAACCAAAAGAAAAA--------ATAATCCTGTCTAACCGGTATATAAAAATAGA------------------------------------------AA-CGTTCATTACGCAAGAATGTGCCCTAAAACGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGGGGGGCGAGAG-------CGA---GGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACACAC--A--TATTTGT------------------------------------------------------ATG-TGTGTGTT------TTAGCCG---------------------------------------------------------C-CCTTGTCATATTTGACCAGAGC--T--G--A----AGAGAG----------------------AAAAC-----------------GAAATAATAAACGT------------------AGAATCCTGTCGAACCGGTTT-TATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................TAAACGT------------------AGAATCCTGTCGAACCGGTT.........................................................................................2713.00300000001000020000
............................................................................................................................................................................................................................................................................................................................TTGACCAGAGC--T--G--A----AGAGAG----------------------AAAAC-----------------GA...........................................................................................................................................2712.00200000000002000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AACGT------------------AGAATCCTGTCGAACCGGTT.........................................................................................2512.00200100000000010000
........................................TGGGA-AATTTCGGCGTAATTGAGTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000000000020000
.......................................................................TTGACTTGG----GG------------CATATTTGT--AGTACGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000002000000000
........................................................................TGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................ACCAGAGC--T--G--A----AGAGAG----------------------AAAAC-----------------GAAA.........................................................................................................................................2611.00100000000000010000
........................................................................TGACTTGG----GG------------CATATTTGT--AGTACGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
............................................................................TTGG----GG------------CATATTTGT--AGTACGAAT------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
.........................................................................................................GT--AGTACGAAT------------------------------TACA...........................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTCGAACCGGTTT-TATAAATAG..............................................................................2611.00100000010000000000
................................................................................................................ACGAAT------------------------------TACACAC--A--TATT...............................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
....................................................................................................................................................................................................................................................................................................................TGTCATATTTGACCAGAGC--T--G--A----AGAGAG----------------------A..................................................................................................................................................................2911.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTACGCAAGAATGTGCCCTAAAACGA2811.00100000000000010000
.....................................................................................................................................................................................................................................TGTT------TTAGCCG---------------------------------------------------------C-CCTTGTCATATTTGAA..................................................................................................................................................................................................................2811.00100000010000000000
.............................................................................TGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACAC..........................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................TAATAAACGT------------------AGAATCCTGTCGAACCGGTT.........................................................................................3011.00100000001000000000
....................................................................................................................................................................................................................................................................................................................TGTCATATTTGACCAGAGC--T--G--A----AGAGA..........................................................................................................................................................................................2711.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AACGT------------------AGAATCCTGTCGAACCGGTTT-.......................................................................................2611.00100000000001000000
droSec2
TGGGGCGCGA--G-------CGA---GGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACACAC--A--TATTTGT------------------------------------------------------ATG-TGTGTGTT------TTAGCCG---------------------------------------------------------C-CCTTGTCATATTTGACCAGAGC--T--G--A----AGAGAG----------------------AAAAC-----------------GAAATAATAAACGT------------------AGAATCCTGTCGAACCGGTTT-TATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TGGGGGGCGA--G-------CGA---GGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACACAC--ATATATTTGT----A--------T------------------------------------GTGCGTGCTGTGTGTT------TCGGCCG---------------------------------------------------------C-CCTTGTCATATTTGACCCGAGC--A--G--A----AGAGAG----------------------AAAAC-----------------GGAATTATAAACGT------------------AGAATCCTGTCGAACCGGTTT-TATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................TAAACGT------------------AGAATCCTGTCGAACCGGT..........................................................................................26113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000200000000000000020101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AACGT------------------AGAATCCTGTCGAACCGGT..........................................................................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TATTGACTTGG----GG------------CATATTTGT--AG....................................................................................................................................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AATTATAAACGT------------------AGAATCCTGTC..................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GGGCGTG---AGCTGGGA-AAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GAATTATAAACGT------------------AGAAT........................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TATTGACTTGG----GG------------CATATTTGT--AGTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................TAATTGAGTGGCTTATTGACTTGG----GG------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................TATTTGT--AGTACGAAT------------------------------TACACA.........................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTACGCAAGAATGTGCCCTAAAACGA2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TAAACGT------------------AGAATCCTGTCGAACCGGTTT-.......................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GGAATTATAAACGT------------------AGAAT........................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TGT----A--------T------------------------------------GTGCGTGCTGTGTGTT------TCGGC...............................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TATTTGT----A--------T------------------------------------GTGCGTGCTGTGTGTT------....................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AACGT------------------AGAATCCTGTCGAACCGGTT.........................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TATAAACGT------------------AGAATCCTGTCGAACCGGT..........................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................ATTGAGTGGCTTATTGACTTGG----GG------------CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TAAACGT------------------AGAATCCTGTCGAACCGGC..........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................A-AATTTCGGCGTAATTGAGTGGCTTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TAATTGAGTGGCTTATTGACTTGG----GG------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCTGTCGAACCGGT..........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTATAAACGT------------------AGAATCCTGTCGAA...............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCTGTCGAACCGGTT.........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TATATTTGT----A--------T------------------------------------GTGCGTGCTGTGTGT...........................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GGGGCGTG---AGCTGGGA-AAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TTATTGACTTGG----GG------------CATATTTGT--AGTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GTGTGTT------TCGGCCG---------------------------------------------------------C-CCTTGT............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TGG----GG------------CATATTTGT--AGTACGAAT------------------------------TA.............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TGCGTGCTGTGTGTT------TCGGCCG---------------------------------------------------------C-CCT...............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TATAAACGT------------------AGAATCCTGT...................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-CGTTCATTACGCAAGAATGT............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TTGACTTGG----GG------------CATATTTGT--AGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TTCGGCGTAATTGAGTGGCTTATTGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACCGGTTT-TATAAATAGATAAGC........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................T------------------AGAATCCTGTCGAACCGGT..........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TATTTGT--AGTACGAAT------------------------------TACACAC--A.....................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCCTGTCGAACCGGTT.........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................TTGAGTGGCTTATTGACTTGG----GG------------CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...................................................................CTTATTGACTTGG----GG------------CATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GTAATTGAGTGGCTTATTGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................A--------T------------------------------------GTGCGTGCTGTGTGTT------TCGGCCG---------------------------------------------------------C-..................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AATTATAAACGT------------------AGAATCCTGT...................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTCGAACCGGTTT-TATAAATAGA.............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTATAAACGT------------------AGAATCCTGTCGAACCGGT..........................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TGTGTGTT------TCGGCCG---------------------------------------------------------C-CCTTGTCA..........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TATTTGT----A--------T------------------------------------GTGCGTGCTGTGTG............................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TTTGT--AGTACGAAT------------------------------TACACAC--ATATAT................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACGT------------------AGAATCCTGTCGAACCGGTT.........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TAAACGT------------------AGAATCCTGTCGAACCGGTT.........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GT------------------AGAATCCTGTCGAACCGGT..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TATTTGT----A--------T------------------------------------GTGCGTGCTGTGTGT...........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GA-AATTTCGGCGTAATTGAGTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGCAAGAATGTGCCCTAAAACGA2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TAATTGAGTGGCTTATTGACTTGG----G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATAAACGT------------------AGAATCCTGTCGAACCGGTT.........................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................A---GGGGCGTG---AGCTGGGA-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCAAGAATGTGCCCTAAAACGA2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TGGGA-AATTTCGGCGTAATTGAGTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AG----------------------AAAAC-----------------GGAATTATAAACGC------------------.............................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droEre2
GGGCGGG--A--GCGAGGGGCGA---GGGGCGTG---GGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACACAC--A--TATTTGT-----------------------------------------------------------GTGCGCT------TCAGCCG---------------------------------------------------------C-CTTTGTCATTTTTGACCGGAGC--T--G--G----GGAGAG----------------------AAAAC-----------------GCAATCACAAGCCT------------------AGAATCCTGTCGAACCGGTTT-TATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................ATTTGT-----------------------------------------------------------GTGCGCT------TCAGCCG---------------------------------------------------------C-CTTTGT............................................................................................................................................................................................................................2711.0010000010
...........................................................................CTTGG----GG------------CATATTTGT--AGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
droYak3
TGGGAGG-GA--G-------CGA---GGGGCTTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACACAC--A--TATTTGT----G--------T------------------------------------GTGTGTG-TGTGTGTT------TTAGCCG---------------------------------------------------------C-CTTTGTCATTTTTGACCAGAGC--T--G--A----AGAGAG----------------------AAAAC-----------------GGAATAATAAACGT------------------AGAATCCTGTCGAACCGGTTT-TATAAATAGATAAGCG-CATAAAAAA-----------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................ATTTTTGACCAGAGC--T--G--A----AGAGAG----------------------AA.................................................................................................................................................................2620.50100000010000
....................................................................................................................................................................TGT----G--------T------------------------------------GTGTGTG-TGTGTGTT------TT..................................................................................................................................................................................................................................................................................................22200.05101000000000
...................................................................................................................................................................TTGT----G--------T------------------------------------GTGTGTG-TGTGTG............................................................................................................................................................................................................................................................................................................19200.05100100000000
droEug1
CGTGGGGGAG--G-------TGA---AGGGCTTG---A-CTTGGA-ATTTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG-CATA-------CATATTTGT--ACTAAGAAT------------------------------TACACACACA--CATAAACACATA--------T------------------------------------ATATATG-TATGTATT------TGAATCG---------------------------------------------------------C-TTTTGTCATATTTGCCTAGAAA--T--A--A--AGAGAGAG----------------------AAAAC-----------------GGAATAATAAACGC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotal
No Reads
droBia1
GGCGGGGGTT--GGGAGG-GCGA---AGAGGGTGTGTAGCTGGGA-ATTTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACACAC--GCATATTTGT--------------------------------------------------------------------------AAACG---------------------------------------------------------C-CTTTGTCATATTTGCCCAGAAA--C--A--A--AGAGAGAG----------------------AAGAC-----------------GTAATAATAAACGC------------------AGAATCCTGTCGAACCGGTTTATAAAAATAGATAAGCG-CATAAA--------------------------GACCA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotal
No Reads
droTak1
TGGGGAGGGA--G-GAAGCCAGA---AGGGCGTG--GAGCTGGGA-ATTTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AATACGAAT------------------------------TACACACACACATATTTGT-----------------------------------------------------------A----TTTGAGTTCTAAACG---------------------------------------------------------C-TTTTGTCATATTTGCCCAGAAA--T--A--AACAGAGAGAG----------------------AAAAC----TGAAAATGAAAATGCAATAATAAACGC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotal
No Reads
droEle1
TGGGGG-CGA----------CGA---AGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACGCAC--A--TATTTGTGCGTGTGTGTGTGTGTGTGTGTGTGTTT--------GCCAGTATTTGTGTGTGTATG-TATGTGTT------TGAGCCG---------------------------------------------------------C-TTTTGTCATATTTGCCCAGAAA--T--A--A----AGAGAG----------------------AAAAC-----------------GGAATAATAAACGC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotal
No Reads
droRho1
AGGGA--CGA----------CGA---AGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--AGTACGAAT------------------------------TACGCAC--A--TATTTGT----G--------TG----------TT-------------TGCCA-----GTGTGTG-TATGTGTT------TGAGCCG---------------------------------------------------------C-CTTTGTCATATTTGCCCAGAAA--T--A--A----AGAGAG----------------------AAAAC-----------------GGAATAATAAACGC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAA---------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotal
No Reads
droFic1
GGAGGGGCGG--G-------CGA---GGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTTGG----GG------------CATATTTGT--TGTACGAAT------------------------------TACACAC--A--TATTTGT----G--------TG----------CT-------------CGCCTCGCC--AGAATG-TGTGTATT------TGAGCCG---------------------------------------------------------C-TTTTGTCATATTTGCCCAGAAA--T--A--G----AGAGAG----------------------AAAAC-----------------GGAATATTAAAGGC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAAA--------------------------GACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotal
No Reads
droKik1
AGGGGGGCAC--G-----CAAGG---GGGGCGTG---AGCTGGGA-AATTTCGGCGTAATTGAGTGGCTTATTGACTCGG----CCTTG---------CATATTTGT--AGTGGGAAT------------------------------TACACAC--A--AAT-CGTACGTG--------T-------------------------AGTATTTGTGTGTACATC--------A------TGGGACG---------------------------------------------------------C-CTTTGTCATATTCGGCCAGAAAGGAGAA--A--AGGGAGAG----------------------AAAAC-----------------GGAATAATAAACGC------------------TGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotal
No Reads
droAna3
TGGGGGA--T--GGGATGTCTAA---AGGGCGTG---AGCTGGGA--ATTTCGGCGTAATTTAGTGGCTTATTGACTCT---------------------------------CC-AAA------------------------------CACACAC--A------------------------------------------------------------------------------------ATCG---------------------------------------------------------CACTTTGTCATATTTGCCCAGCGT--A--G--A----AGAGAG----------------------AAAAC-----------------GGAATAATAAACAC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATAAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGGGTGGG-G--GGGCCGCCCGA--AAGGGCGTG---AGCTGGGA--ATTTCGGCGTAATTTAGTGGCTTATTGACTCT---------------------------------CC-AAA------------------------------CACACAC--A--CAAT--------------------------------------------------------------------------------CG---------------------------------------------------------CATTTTGTCATATTTGCCCAGCGC-----G--A----AGAGAG----------------------AAAAC-----------------GGAATAATAAACAC------------------AGAATCCTGTCGAACCGGTTTATATAAATAGATAAGCG-CATCAA--------------------------AACAA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotal
No Reads
dp5
GG-----------------------------------------AA-AATTTCGGCGTAATGGAGTGGCTTATTGACTCGC----GT-CACACATTTGAAGTATTTGT--TGAAGT-AT------------------------------TTC---C--TTGTATTTGT----------------------------------------------------ATTTG-TATTTG---------------TTT--GGGTATTCAAAGGCCCCAAGCGGTGTGGGGTGGTGTGGGGCGTGCCG-----C---ATGTCATATTTGCAAAGAAA--A--A--TCAAGTGAAAT---------------CAAGTGAAGAACGTACT--------------AAAAATAATCCCAAATGTAAAAGAGTGAAGCGAATCCTGTGTAACCGGTTCTTATAAATAGATAAACGACACAGAGAAGATCTGAGGAGCGCAGAGAACGCAGCCC-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................TGAAAT---------------CAAGTGAAGAACGTACT--------------AAA........................................................................................................................................2611.0010100000000
...............................................................................................................................................................................................................................................................................CGGTGTGGGGTGGTGTGGGG................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGAGCGCAGAGAACGCAGCCC-................................2511.0010001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGATCTGAGGAGCGCAGAGAACGC......................................2711.0010000000001
droPer2
GG-----------------------------------------AA-AATTTCGGCGTAATGTAGTGGCTTATTGACTCGC----GT-CACACATTTGAAGTATTTGT--TGAAGT-GT------------------------------TTC---C--TT----------------------------------------------------------GTATTTG-TATTTG---------------TTT--GGGTATTCATAGGCCCCAAGCGGTGTGGGGTGGTGTGGGGCGTGCCG-----C---ATGTCATATTTGCAAAGAAA--A--A--TCAAGTGAAAT---------------CAAGTGAAAAACGTACT--------------AAAAATAATCCCAAATGTAAAAGAGTGAAGTGAATCCTGTGTAACCGGTTCTTATAAATAGATAAACGACACAGAGAAGATCTGAGGAGCGCAGAGAACGCAGCCC-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................ATGTAGTGGCTTATTGACTCGC----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
................................................................................................................................................................................................................................................................................GGTGTGGGGTGGTGTGGGG................................................................................................................................................................................................................................................1960.171000001
droWil2
TGGAGTGGGA--T-----AGAGTGGAGCATAGCG---AGTCGGGAAAATTTCGGCGTAATTGAGTGGCTTATTTGCTTAA----GT-GA---------AATATTTGTTTAGTTTGCCTAATGCCATCACCTATTTGAGTAAATGTATGTACATAC--A--TATGTAC--ATA--------T--------------------------------------ATATT-------CTTAAATTATAATCGTTT--TTTCATTC-----------------------------------ACATT-----------------ATGTTCGGGAA--T--A--T----AGAAATACATAGTTTAAGAATCGA-----T--C--------AGTGA-GCTTC--------AGTA------------------AGAATCCTGTTGAACCGGTTTCTAAAAATAGATAAAT-------A--------------------------AGCAACCTTCCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................GA-----T--C--------AGTGA-GCTTC--------AGTA------------------AGA..........................................................................................................2111.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................TTC--------AGTA------------------AGAATCCTGTTGAACCGGT..........................................................................................2611.00101000
........................................................................................................................................................................................................................................................T--TTTCATTC-----------------------------------ACATT-----------------ATGTTCGGGAA--T--A--....................................................................................................................................................................................................2711.00101000
droVir3
AGGGCGG-------------------GGGGC-------CCTGAGA-AATTTCGGCGTAATTGAGTGGCTTATTTGCTTCG----TC-----------------------------GAT------------TACATATGTATATATATATATATAC--A--TATGAGC--ATA--------TATATACTTGTAGTTAAAGAGGAACTT----------GTAGTTG-TAGTTG---------------TTC--GGCTATTT-----------------------------------GCCTAATG---CGTTGCCATATTTGTCCAGCTA--A--AAAGTAAGTAAAAG----------------------GAAAC-----------------GAAA----------------------------ACAATCCTGTCTAACCGGTCCATAAAAATAGA------------------------------------------AA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................CTATTT-----------------------------------GCCTAATG---CGTTGC............................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
...................................................CGGCGTAATTGAGTGGCTTATTTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000001000000000000000000000000000000000000000
.................................................TTCGGCGTAATTGAGTGGCTTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTCCATAAAAATAG..............................................................................1720.501000000000000000000000000000000000000000000000000000000100000000
droMoj3
ACAGCG-CGG--G-------C-------AG-------CCCTGAGAAATTTTCGGCGTAATTGAGTGGCTTATTTGAGCCGTCGA---TGCG-------CGAGTGTGC--AGTGT-------------------------------------------------------------------------------------------------------GTAGTTG-TTTTTG---------------TTCTTAGCTGTTT-----------------------------------GCCTAATG---CCTTGCCATATTTGTCCAGTAT-----A--G----TTAAAG----------------------GAAAC-----------------GC----------CA------------------GCAATCCTGTCTAACCGGTCTGTAAAAATAGA------------------------------------------AG-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................GTAATTGAGTGGCTTATTTGAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................AG-------CCCTGAGAAATTTTCGGCGTAATTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droGri2
---------------------------------------CTGAGA-AATTTCGGCGTAATTGAGTGGCTTATTTGCACCGTCGA---T---------------T----------AATT------------------------------TCCACAA--A--CATGGAT----G--------TG----------TT-------------CTCTTTATGTGTATTTG-TAGTTG---------------TTT--GACCATTT-----------------------------------GCCTAATGCC-CGTTGCTATATTGATCCAGCAAG------------CTAACT---------------AA-----------TAAT--------------AAAAAAAAAACCAAAAGAAAAA--------ATAATCCTGTCTAACCGGTATATAAAAATAGA------------------------------------------AA-CGTTCATTACGCAAGAATGTGCCCTAAAACGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:27 PM