ID:

dsi_11771

Coordinate:

3l:7734566-7734621 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-6.6	-6.2	-6.1

Flybase annnotation

exon [3l_7733973_7734565_-]; CDS [3l_7733973_7734565_-]; CDS [3l_7734622_7734947_-]; exon [3l_7734622_7735032_-]; intron [3l_7734566_7734621_-]

No Repeatable elements found

mature

star

Sense Strand Reads

##################################################--------------------------------------------------------################################################## GTGAAGCTCCGCCGGCGCGTCCAAATGTACCAGTGGGTCGAGGAGACGGTGTAAGTGGTTTTGGTTTCCAACGTTCCAACTAGCTCTAATTTCAAAACCTCCGCAGCGAGCACAACTATGGCGACAGCGTGGGAACGACGCAGTCGGACTCCCGCA ************************************************((....((((((((........(((......))).......))))))))...))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M053 female body	SRR553488 RT_0-2 hours eggs
..........................GTACTAATCGGTCGAGGA................................................................................................................	18	3	20	12.95	259	170	74	2	0	0	0	0	13	0
............................ACCAGTGGGTCGAGGAGAC.............................................................................................................	19	0	1	3.00	3	0	0	3	0	0	0	0	0	0
.........................TGTACCAGTGGGTCGAGGAGACGGT..........................................................................................................	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.........................TGTACCAGTGGGTCGAGGAGACG............................................................................................................	23	0	1	1.00	1	0	0	0	0	0	1	0	0	0
................................................................................................................CAACTATGGCGACAGCGTGGGAACGACGCA..............	30	0	1	1.00	1	0	0	0	0	1	0	0	0	0
...........................................................TTTGGTTTCCAACGTT.................................................................................	16	0	2	0.50	1	0	0	0	0	0	0	1	0	0
........................................................................................................................GCGACAGCGTGGGGA.....................	15	1	10	0.20	2	0	0	0	2	0	0	0	0	0
..............................................................................................................................GCTTGGGAACACCGCAGTCG..........	20	3	6	0.17	1	0	0	0	0	0	0	1	0	0
....................................................................................................................................GAACGACGGACTCTGACTC.....	19	3	9	0.11	1	0	0	0	0	0	0	0	0	1

Anti-sense strand reads

CACTTCGAGGCGGCCGCGCAGGTTTACATGGTCACCCAGCTCCTCTGCCACATTCACCAAAACCAAAGGTTGCAAGGTTGATCGAGATTAAAGTTTTGGAGGCGTCGCTCGTGTTGATACCGCTGTCGCACCCTTGCTGCGTCAGCCTGAGGGCGT ************************************************((....((((((((........(((......))).......))))))))...))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	M025 embryo
..........................................................................................................................................GCGTCAGACTGAGGGC..	16	1	1	5.00	5	4	1	0	0	0	0	0
..................................................................AGGTTGCAAGGTTGATCGAGA.....................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0
..........................................................................................................................................GCGTCAGACTGAGGGCCT	18	2	5	0.40	2	0	0	0	2	0	0	0
................................................................AAAGGCTGTAAGGTTTATCGAG......................................................................	22	3	3	0.33	1	0	0	0	0	1	0	0
....................................................................................GGATTGAAGTTTTGGAGG......................................................	18	2	3	0.33	1	0	1	0	0	0	0	0
...........................................................................................................................................CGTCAGACTGAGGGC..	15	1	4	0.25	1	1	0	0	0	0	0	0
..........................................................................................................................................GCGTCAGACTGAGGGCC.	17	2	9	0.11	1	1	0	0	0	0	0	0
.........................................................................................................................................AGCGTCAGACTGAGGGC..	17	2	11	0.09	1	1	0	0	0	0	0	0
...........................................CCTGCCACATTCTCCAGAA..............................................................................................	19	3	11	0.09	1	1	0	0	0	0	0	0
...............................................................CATAAGTTGTAAGGTTGATC.........................................................................	20	3	12	0.08	1	0	0	1	0	0	0	0
..........................................................................................................................................GCGTCAGACTGAGGGCT.	17	2	12	0.08	1	1	0	0	0	0	0	0
................................................................AAAAATTGCAAGGTTGAT..........................................................................	18	2	12	0.08	1	0	0	0	0	0	1	0
.........................................................................................................................................GGCGTCAGACTGAGGGCCT	19	3	15	0.07	1	0	0	0	0	0	0	1
.................................................................AAGGTTGCGAGGTTG............................................................................	15	1	20	0.05	1	0	0	1	0	0	0	0
...........................................................................................................CTCGTGATCATACCGC.................................	16	2	20	0.05	1	0	0	0	1	0	0	0

Generated: 04/24/2015 at 10:31 AM