ID:

dsi_11758

 Coordinate:

3r:7840449-7840699 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.4 -13.9 -13.9 -13.8

Flybase annnotation

exon [3r_7840700_7841753_-]; CDS [3r_7840700_7841753_-]; exon [3r_7840323_7840448_-]; CDS [3r_7840323_7840448_-]; intron [3r_7840449_7840699_-]

No Repeatable elements found

mature
  1. 2l:16855444-16855458 +
  2. 3r:3479018-3479032 -
  3. dsi_11758  3r:7840681-7840695 -
  4. 3r:22211189-22211203 +
  5. x:16142230-16142244 -
  6. node_99:5-19 +
star
  1. 2l:1533604-1533618 +
  2. 2l:12999790-12999804 +
  3. 2l:13967073-13967087 +
  4. 3l:9733924-9733938 -
  5. 3l:16834919-16834933 -
  6. 3r:7371399-7371413 -
  7. dsi_11758  3r:7840571-7840585 -
  8. 3r:9592716-9592730 +
  9. 3r:15768237-15768251 +
  10. 3r:19900809-19900823 +
  11. x:12125872-12125886 -
  12. x:18917112-18917126 -

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCTGTCCATGCAGGGAGGATTCATGGACTCCTTGGCATTTGCTACAGAGGTAAATATATAAAAAGATATCTGTGAAAAAAGGAATCAAGATCCCTACTCAATTTATAGTTTTATCCAAATATTTTAATCAAAATAGCGTAGCATGTTCTGAAATTTAAAGAATATTTGATTTGATTGATTTTTGTGGTTTGCATAACCATAACATATTAAGTGATTTTAAAAAGTAAACGTTTTTTCAAATAGTATATGTAAGACACCAGATGGTACTATTTCATCTATCTTTTTTGTATTTTTCTCCAGCATCCTAAGTTTGTGTTTGATATGGTTGTGCTTTCCGTTTGCTCAGCGGT
******************************************************............................................((((((............(((((((((((((((.((((((...)).)))).)))...))))))..))))))....))))))**************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
...TGTCCATGCAGGGAGGATTCATGGAC.................................................................................................................................................................................................................................................................................................................................. 26 0 1 4.00 4 3 1 0 0 0 0 0 0 0
.........TGCAGGGAGGATTCATGGACTC................................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........ATGCAGGGAGGATTCATGGACTCCTT............................................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................GATATGGTTGTGCTTTCCGTT........... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........GCAGGGAGGATTCATGGAC.................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................ATTCATGGACTCCTTGGCAT........................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................TATGGTTGTGCTTTCCGTTTGCTCAG.... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TAAGTTTGTGTTTGATATGGT........................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................TTGATATGGTTGTGCTTTCCGTTTGC........ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TATTTGAAGTAGTATATGTAAGACAC............................................................................................. 26 3 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................ATACCCAGAACATATTACGT.......................................................................................................................................... 20 3 8 0.38 3 3 0 0 0 0 0 0 0 0
...........................................TACAGAGTCAAATACATAAAAA.............................................................................................................................................................................................................................................................................................. 22 3 6 0.17 1 0 0 0 0 0 0 1 0 0
......................................................ATATATAAAAAGATA.......................................................................................................................................................................................................................................................................................... 15 0 6 0.17 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................ATTTGATTTGATTGA............................................................................................................................................................................ 15 0 12 0.08 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................................................CTCTGAAATGGTTGTGCTTT................ 20 3 13 0.08 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................TACCCAGAACATATTACGT.......................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................ACATAGTAGATGTAAGA................................................................................................ 17 2 16 0.06 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................TGTGTTAGATAGCGTTGTG.................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCGACAGGTACGTCCCTCCTAAGTACCTGAGGAACCGTAAACGATGTCTCCATTTATATATTTTTCTATAGACACTTTTTTCCTTAGTTCTAGGGATGAGTTAAATATCAAAATAGGTTTATAAAATTAGTTTTATCGCATCGTACAAGACTTTAAATTTCTTATAAACTAAACTAACTAAAAACACCAAACGTATTGGTATTGTATAATTCACTAAAATTTTTCATTTGCAAAAAAGTTTATCATATACATTCTGTGGTCTACCATGATAAAGTAGATAGAAAAAACATAAAAAGAGGTCGTAGGATTCAAACACAAACTATACCAACACGAAAGGCAAACGAGTCGCCA
****************************************************************************************************************************************************************************............................................((((((............(((((((((((((((.((((((...)).)))).)))...))))))..))))))....))))))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
...................................................................................................................................................................................................................................................................................................TAATGCGGTCGTAGGATTCA........................................ 20 3 2 1.00 2 2 0 0
....................................................................................................................................................................................................................................................................................................AATGCGGTCGTAGGATTC......................................... 18 2 1 1.00 1 0 1 0
.....................................................................................................................................................................................................................................................................................................ATGCGGTCGTAGGATTCA........................................ 18 2 2 1.00 2 2 0 0
.........................................CTATGTCTCCATTTAT...................................................................................................................................................................................................................................................................................................... 16 1 4 0.50 2 2 0 0
.........................................................................................................................................................................................................................................................................................................GGTCGTAGGATTCACA...................................... 16 1 2 0.50 1 0 0 1
...................................................................AGAGACACTTCGTTCCTTAGT....................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0
.......................................................................................................................TATAAAATTAGTTTTATTGTAT.................................................................................................................................................................................................................. 22 2 3 0.33 1 1 0 0
.........................................CTATGTCTCCATTTATA..................................................................................................................................................................................................................................................................................................... 17 1 4 0.25 1 1 0 0
.....................................................................................................................................................................................................................................................................................................ATGCGGTCGTAGGATTC......................................... 17 2 5 0.20 1 0 0 1
....................................................................................................................................................................................................................................................................................................AAAGTGGTTGTAGGATTC......................................... 18 2 7 0.14 1 1 0 0
...........................................................................................................................................GTCGTACAAGACGTTAAATGT............................................................................................................................................................................................... 21 3 8 0.13 1 0 0 1
...........................................................................................AGGGTTGAGTTAAATATTAGA............................................................................................................................................................................................................................................... 21 3 9 0.11 1 0 0 1
................................................................................................................................................ACAAGACTTTAAATG................................................................................................................................................................................................ 15 1 20 0.10 2 0 0 2
.......................................................................................................................................................................................................................................................................................................GCGGTCGTAGGATTCAC....................................... 17 2 11 0.09 1 1 0 0
....................................................................................................................................................................................................................................................................................................AAGGAGGTCGTAGGA............................................ 15 1 16 0.06 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:7840399-7840749 - dsi_11758 CGCTGTCCATGCAGGGAGGATTCATGGACTCCTTGGCATTTGCTACAGAGGTAAATATATAAAAA-GATA--TCTGT---G--AAAAAA----GGAATCAAGATCCCTACTCAATTTATAGTTTTATCCA-----AATATTTTAATCAAAATAGCGTAGCATGTTCTGA----------------------------------------------------------------AAT---TTAAA----GAAT-------------------ATTTGATTTGATTGATTTTTGTGGTT----------------------------TGCATAACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAACATATTAAGTGATTTTAA-AAAG-----------TAAACGTT----------T---------TTTCAAATAG----T---ATATGTAAGACAC----------------------C---AGA-TGGTACTATTTCAT-------------------------------------------CTATCTTT-TTTGTATTTTT---CTCCAGCATCCTAAGTTTGTGTTTGATATGGTTGTGCTTTCCGTTTGCTCAGCGGT
droSec2 scaffold_12:727269-727638 - CGCTGTCTATGCAGGGAGGATTCATGGACTCCTTGGCATTTGCTACAGAGGTAAATATATAAAAA-GATA--TCTGT---G--AAAAAA----CGGATAAAGATCCGCTCTCAATTCATGGTGATATCCA-----AATACTTTAATCAAAATAGCGTAGCATGTTCTGA----------------------------------------------------------------AAT---TTAAA----GAAT-------------------ATTGGATTTGCTTGTTTTTTGTGGTT----------------------------TGCATAAACCAAAATTT-CAAT---T-T-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTT----------------------T----------------------GAATAAC-----AAGTGATTATAA-AAAG-----------TAAACGTT----------A---------TTTCAAGTAG----T---ATATGTAAAACAC----------------------C---AGA-TGGTACTATTTCAT-------------------------------------------CTATCTTT-TTTGTGTTTTT---CTCCAGCATCCTAAGTTTGTGTTTGATATGGTTGTGCTTTCCGTTTGCTCAGCGGT
dm3 chr3R:13433353-13433704 + CGCTGTCCATGCAGGGAGGATTCATGGACTCCTTGGCATTTGCTACAGAGGTAAATATATATAAA-GATA--TC-------------------------AAG-----CTCTCAATTTATGATGATATCCA---------TTTTAATCAAAATAACGTAGCATGTTCTGA----------------------------------------------------------------AAT---TGAAA----GAAT-------------------ATTTGATTTGTTTGTGTTTTGTGGTTTG--------TGATT-------------TGCATAACCCAAATTGCAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TATAA--CA-------------------------------------------AAATAAC-----AATAGATTTTAA-AAAT-----------TTAACGTT----------T---------TTTCAAGTAGCTGAT---ATATGTAAGACAC----------------------C---AGA-TGGTACTTTCTCACT------------------------------------------GT---TTT-TTTGTATTTTT---CTCCAGCATCCTAAGTTTGTGTTTGATATGGTTGTGCTTTCCGTTTGTTCAGCGGT
droEre2 scaffold_4770:8197765-8198148 - der_576 CGCTGTCCATGCAGGGAGGATTCATGGACTCCTTGGCATTTGCCACAGAGGTAAATATATAAAAA-GTTACATC------G--ACA--------------TGATC----ATCAAT------TGATATCACTATCACACA-TTTAACAAAAATAGCGTAGCTTGTTCTGA--------------------------------------------------------------------------A----GAAA-------------------AT----TTTGTTTATTTCTTGTTGTT----------------------------AGCATAACCCAAATTCT-AAAC---T-TG-TCTTCTGGTATT---CA---ACTG-------------------------------------T---------------------------AT--------------G-----------TT---------TTATGTACTTTCACAATAGCAGAATTTTTGTTTA-------------------------------------------AAATAGC-----AATTGATTTTGAAAAAA-----------AAAATGTT----------T---------TTTCAAGCAGTAGAT-------AT---------------------------------AGA-TGATACTACCTCAC-------------------------------------------GT---TCC-TTTGTATTTTT--ATTCCAGCATCCTAAGTTCGTGTTTGATATGGTTGTGATCTCCGTTTGCTCAGCGGT
droYak3 3R:1988399-1988785 + CGCTGTCCATGCAGGGAGGATTCATGGACTCCTTGGCATTTGCCACAGAGGTAAATATTTAAAAA-GATACATC------G--ACAGACACATTAAATCAATATCAATACTCAAG------TGATATCAC-------TA-TTCAACAAAAATAGCGTAGCTTGTTCTG---------------------------------------------------------------------------------AAT-------------------ATTTGATTTGTTTATTTTCT---GTT----------------------------AGCGTAACCCAAATTC-------------------------------------------------------------------------------------------------------GTACATTTG-TAA---GTATA--TAAGCCATTACTTGGTTTATGTACTTTCATAGAAGC-----------------------------------------------------ATAGAAATAGC-----GAATGAATTTGA-AAAA-----------AAAGGGTT---------------------TTGAAGCAG---AC---ATATGTAAGACAC----------------------C---AGA-TGGTCCTACCTCAC-------------------------------------------GT---TCT-TTTGT--ATTT---TTCCAGCATCCTAAGTTCGTATTTGATATGGTTGTGCTTTCTGTTTGCTCAGCGGT
droEug1 scf7180000405174:75802-76083 + CTCTGTCCATGCAGGGAGGATTCATGGACTCGTTGGCATTTGCCACAGAGGTATTTATATAAACA-AATTGGT---AAACGAAACAGACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGTATTTTGTTAATCTACTTACCTC----------AAAAC--ATATTATTTA----------------T-TAAC---TGCGATTGTTTCTATTGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATGTT----------T---------CTTTTACCGATGGATTGTGTAAATAACTTAC----------------------C---AGA-TGGTCCTACCTCAC-------------------------------------------GT---AATTTT--TATTTAT---TTCCAGCATCCAAAGTTCGTGTTTGATATGGTTGTGCTTTCGGTTTGCTCAGCGGT
droBia1 scf7180000302402:8097111-8097443 + CGCTGTCGATGCAGGGCGGATTCATGGACTCCTTGGCATTTGCCACAGAGGTAGGTGTATAACGA--------------------------------------------------------------------------------------------AGC-------------------------------------------------------------------------AAT---GGAAA----GAAT-------------------ATTGGATTTGCTTGTTCTTCATAGCTTGAACAACCTAAAACCGGCTCCTGTTTA----------------T-AACC---T-CG-TTGTTTGGTTTGGCCCA---ACTG-------------------------------------T---------------------------AT--------------A-----------CATTATGT-------------------------------GGTTTATCA-------------------------------------------AA-----T------------------------------------------------TAGGTACTTT----AGCAA----T---TTATAAGTTTCTCGTATGTAGAGTACAACATACATGGGAAGT-ATGTCCTATATCAC-------------------------------------------TT---TCTTTC--TATTTATTTTGTTCAGCATCCCAAGTTCGTGTTTGACATGGTAGTGCTTTCTGTTTGCTCAGCGGT
droTak1 scf7180000415811:171147-171422 - CGCTGTCGATGCAGGGCGGATTCATGGACTCCTTGGCATTTGCCACAGAGGTAGGTATATAAAAAAGACA--TCGTC---T--AAGG---------------------------------------------------------------AA---------------------------------------------------------------------------AGGAAAAAT---TTAAAACACGAAT-------------------ATTGCATTAGTTTGTGCTGTATAGATTGAAGAACCTGGATCCGCCTCTTTTT---------------------------T-TT-CCGTTAC--------------------------------------------------------------------------------------ATTTA-TA----GCATAGTTAAACAGATACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTT-CATATCAC-------------------------------------------CT---ACTTTT--TATTTAT---TTCTAGCATCCCAAGTTCGTGTTTGACATGGTTGTGCTTTCCGTTTGCTCAGCGGT
droEle1 scf7180000491080:2849353-2849689 - CACTGTCGATGCAGGGCGGATTCATGGACTCGTTGGCATTTGCCACAGAGGTGGGTGTTTAAAGAAGATAC---GGT---G--AAAGAC--------------------------------------------------------------A---------------------------------------------------------------------------ACAACATGACTTC----ATAACAAGTTAGTTAACAAAGATAAATATTTAATGAATATATTCAGTATTGTT----------------------------TGGGTAACCCAAAATGCACACTATTT-CA-AACTAAAGTTTACCCAA---GCTG-------------------------------------A---------------------------AT--------------A-----------CAACC------------------------------TTTTTGTTTAACA-------------------------------------------CA-----T------------------------------------------------AAATTACTT--------AA----T---ATATAAAATTCAC----------------------C---AGAACGGTCCTACCTCAC-------------------------------------------AT---TCTATT--TCTTCAT---TTCTAGCATCCAAAGTTCGTGTTTGATATGGTGGTGCTTTCCATTTGCTCAGCGGT
droRho1 scf7180000780187:5213-5316 + AAACATTTTTTTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------AA-AAGTCCTATCTCAC-------------------------------------------CT---TCTATA--TATTTAT---TTCTAGCATCCAAAGTTCGTGTTTGATATGGTTGTGCTTTCTATTTGCTCAGCCGT
droFic1 scf7180000453912:2046199-2046598 - CGCTTTCGATGCAGGGAGGATTCATGGACTCGTTGACATTTGCCACAGAGGTAAGACCTTAAAAA-GCAATATCT----------------------------------------------------CTCGAAAACATA-TGCAACGAGAAA---------------------------------------------------------------------------AGGAAATGTATTA----ATAGGAAT-------------------GTTAGTTTTAAAT-------GCTGGT----------------------------TAAATAACCTAAATACC-GACC---T-TT-CCATTAGGTTTGCACCACCAGCTGCT------------------------------------------------------------------------------------------------------------------------------GTTTTGTTGATCATTCAAGCTTTCTTTAATTATTAATTCTAGTAAAAGCAAGTCA--AGC-----TAAATCGTTTAA-GAAGATCTTTATTTGTAAGGGTTCTTGTAAAGA-AAAACACTT--------A-----------ATATTATTCAC----------------------C---AGA-TGGTCCTACCTCAC-------------------------------------------GT---TCTATT--TATTTA----TTCCAGCACCCAAAGTTCGTGTTTGATATGGTGGTGCTTTCCATTTGCTCAGCGGT
droKik1 scf7180000302461:1097355-1097424 - TTCTTTCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAT---TTCCAGCATCCAAAGTTTGTGTTTGACATGGTTGTGCTTTCCATTTGCTCAGCGGT
droAna3 scaffold_13340:5725811-5725893 + G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTACCTCAC-------------------------------------------TT---ATACTT--TGTTTAT---TTCCAGCATCCTAAATTCGTATTCGATATGGTTGTGCTCTCTATTTGCTCAGCGGT
droBip1 scf7180000396708:3087583-3087645 - TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT---TTTCAGCATCCAAAGTTCGTGTTCGACATGGTTGTGCTCTCTATTTGCTCAGCGGT
dp5 2:23767779-23767843 - CGCTGTCGATGCAGGGCGGATTCATGGACTCCCTGTCCTTTGCCACAGAGGTATATATGTCCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_3:6542634-6542698 - CGCTGTCGATGCAGGGCGGATTCATGGACTCCCTGTCCTTTGCCACAGAGGTATATATGTCCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004902:8528686-8528765 + CTTTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTCATTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--ATTG---TTATAGCATCCGAAGTTTGTGTTTGACATGATTATACTATCCATATGCTCAGCTGT
droVir3 scaffold_13047:17171572-17171647 - ACCGAACTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTGT-TTAAT---TTATAGCATCCCAAGTTTGTCTTCGACATGGTTGTTCTATCCATATGCTCTGCGGT
droMoj3 scaffold_6540:14464319-14464617 + CGCTCTCCATGCAGGGCGGCTTCATGGACTCACTGGCATTTGCCACAGAGGTGAGTG-----------------------------------------------------------------------------------------------------GCCTTAATTTAAATTCTTTTTATTCATATACTAATATTAAAAACTAAATGCAGAAGGGCCCTTAAAGAAGGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGATAATGCTTATTTATATATTTCTGTAGTTTTTAA--TTTG-----------TT---------TATTGAAATTGCCCATTCGCATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATTCTTAAATTTCT------AACAGCTAA-----------CCAATTTA-ATTGT-TTAAC---TTATAGCATCCCAAGTTTGTCTTCGACATGGTTATTCTATCCATATGCTCTGCTGT
droGri2 scaffold_14906:12243552-12243854 - CGCTTTCCATGCAGGGCGGCTTCATGGACTCGCTAGCCTTTGCCACGGAGGTGAGTT-ACCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGT-------------------CTTGAATGTGTTTATTTC----------------------------------------------------------------------------------ATTATTTGCTGATCTACGTATAGATTAAAATCGTATATTAAACTCTATTCTTCATGCTTAGTC-GATATTT--GTACACTAT-A--TTTG-----------TT---------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAC----------------------G---AGA-A-------------CACATTTTCAAATTCCATACGGAAACAGCTAACAATGGTTAACCCAATTGT-TTTGT--TTAATTTATGTAGCATCCCAAGTTTGTGTTTGATATGGTTGTGCTCTCCATTTGCTCAGCGGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGCTGTCCATGCAGGGAGGATTCATGGACTCCTTGGCATTTGCTACAGAGGTAAATATATAAAAA-GATA--TCTGT---G--AAAAAA----GGAATCAAGATCCCTACTCAATTTATAGTTTTATCCA-----AATATTTTAATCAAAATAGCGTAGCATGTTCTGA----------------------------------------------------------------AAT---TTAAA----GAAT-------------------ATTTGATTTGATTGATTTTTGTGGTT----------------------------TGCATAACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAACATATTAAGTGATTTTAA-AAAG-----------TAAACGTT----------T---------TTTCAAATAG----T---ATATGTAAGACAC----------------------C---AGA-TGGTACTATTTCAT-------------------------------------------CTATCTTT-TTTGTATTTTT---CTCCAGCATCCTAAGTTTGTGTTTGATATGGTTGTGCTTTCCGTTTGCTCAGCGGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...TGTCCATGCAGGGAGGATTCATGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.00400010000003000000
.........TGCAGGGAGGATTCATGGACTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
........ATGCAGGGAGGATTCATGGACTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGTTGTGCTTTCCGTT...........2111.00100000000001000000
..........GCAGGGAGGATTCATGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
...................ATTCATGGACTCCTTGGCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTTGTGCTTTCCGTTTGCTCAG....2611.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTTGTGTTTGATATGGT........................2111.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATATGGTTGTGCTTTCCGTTTGC........2611.00100000000001000000
......................................................ATATATAAAAA-GATA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1560.17100000010000000000
...............................................................................................................................................................................................................................................................................ATTTGATTTGATTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15120.08100000010000000000
droSec2
CGCTGTCTATGCAGGGAGGATTCATGGACTCCTTGGCATTTGCTACAGAGGTAAATATATAAAAA-GATA--TCTGT---G--AAAAAA----CGGATAAAGATCCGCTCTCAATTCATGGTGATATCCA-----AATACTTTAATCAAAATAGCGTAGCATGTTCTGA----------------------------------------------------------------AAT---TTAAA----GAAT-------------------ATTGGATTTGCTTGTTTTTTGTGGTT----------------------------TGCATAAACCAAAATTT-CAAT---T-T-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTT----------------------T----------------------GAATAAC-----AAGTGATTATAA-AAAG-----------TAAACGTT----------A---------TTTCAAGTAG----T---ATATGTAAAACAC----------------------C---AGA-TGGTACTATTTCAT-------------------------------------------CTATCTTT-TTTGTGTTTTT---CTCCAGCATCCTAAGTTTGTGTTTGATATGGTTGTGCTTTCCGTTTGCTCAGCGGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATATGGTTGTGCTTTCCGT............2211.0010010
....GTCTATGCAGGGAGGATTCATGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
dm3
CGCTGTCCATGCAGGGAGGATTCATGGACTCCTTGGCATTTGCTACAGAGGTAAATATATATAAA-GATA--TC-------------------------AAG-----CTCTCAATTTATGATGATATCCA---------TTTTAATCAAAATAACGTAGCATGTTCTGA----------------------------------------------------------------AAT---TGAAA----GAAT-------------------ATTTGATTTGTTTGTGTTTTGTGGTTTG--------TGATT-------------TGCATAACCCAAATTGCAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TATAA--CA-------------------------------------------AAATAAC-----AATAGATTTTAA-AAAT-----------TTAACGTT----------T---------TTTCAAGTAGCTGAT---ATATGTAAGACAC----------------------C---AGA-TGGTACTTTCTCACT------------------------------------------GT---TTT-TTTGTATTTTT---CTCCAGCATCCTAAGTTTGTGTTTGATATGGTTGTGCTTTCCGTTTGTTCAGCGGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....TCCATGCAGGGAGGATTCATGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000100000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......CATGCAGGGAGGATTCATGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTTGTGTTTGATATGGTTGTGC...................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
...TGTCCATGCAGGGAGGATTCATGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.GCTGTCCATGCAGGGAGGATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTGATATGGTTGTGCTTTCCGT............2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTAAGTTTGTGTTTGATATGGT........................2413.0030000000000000000000000000000000000000000000000010000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATATGGTTGTGCTTTCCGTTTGT........2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGTTTGTGTTTGATATGGTTGT.....................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCCTAAGTTTGTGTTTGATATGGT........................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTTGTGCTTTCCGTTTG.........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTGTGCTTTCCGTTTGTTCAGCG..2612.0020000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTTGTGTTTGATATGGTTGTGCT..................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTTGATATGGTTGTGCTTTC...............2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTTGTGTTTGATATGG.........................2012.0020000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ATGCAGGGAGGATTCATGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATATGGTTGTGCTTTCCGTTTGT........2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGTTTGTGTTTGATATGG.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....TCCATGCAGGGAGGATTCATGGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACGTT----------T---------TTTCAAGTAGCTGAT---A..................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TTTAATCAAAATAACGTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TAAA-GATA--TC-------------------------AAG-----CTCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCATGGACTCCTTGGCATTTGCTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTGATATGGTTGTGCT..................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................GGATTCATGGACTCCTTGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GAGGATTCATGGACTCCTTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTTGTGTTTGATATGGTTGTG....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........CAGGGAGGATTCATGGACTCCTTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TGGACTCCTTGGCATTTGCTACAGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GCAGGGAGGATTCATGGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................TTTAATCAAAATAACGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GAGGATTCATGGACTCCTTGGCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCATGGACTCCTTGGCATTTGCTACAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ATTCATGGACTCCTTGGCATTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCTAAGTTTGTGTTT................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTTGATATGGTTGTGCTTTCCG.............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTGATATGGT........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTTGTGCTTTCCGTTTGTTCAGCG..2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................T-------------------ATTTGATTTGTTTGTGTTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................TCATGGACTCCTTGGCATTTGCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATATGGTTGTGCTTTCCG.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....GTCCATGCAGGGAGGATTCATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTTGTGCTTTCCGTTTGTTC......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTTGTGCTTTCCGTTTGTTCA.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TGGACTCCTTGGCATTTGCTACAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTTGATATGGTTGTGCTTTCC..............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGTTTGTGTTTGATATGGT........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCTAAGTTTGTGTTTGATATGGT........................2811.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTTGATATGGTTGTGCTTTCCGTT...........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATATGGTTGTGCTTTCC..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
...............GAGGATTCATGGACTCCTTGGCATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATATGGTTGTGCTTTCCGT............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CAGGGAGGATTCATGGACTCCTTGGCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CATGCAGGGAGGATTCATGGACTCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATATGGTTGTGCTTTCCG.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.........TGCAGGGAGGATTCATGGACTCCTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGTCCATGCAGGGAGGATTCATGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCTAAGTTTGTGTTTGATATGGT........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTTTCCGTTTGTTCAGCGGT2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTTGATATGGTTGTGCTTTCCGT............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........TGCAGGGAGGATTCATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TTT-TTTGTATTTTT---CTCCC...................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TTTGTTTGTGTTTTGTGGTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGCTGTCCATGCAGGGAGGATTCATGGACTCCTTGGCATTTGCCACAGAGGTAAATATATAAAAA-GTTACATC------G--ACA--------------TGATC----ATCAAT------TGATATCACTATCACACA-TTTAACAAAAATAGCGTAGCTTGTTCTGA--------------------------------------------------------------------------A----GAAA-------------------AT----TTTGTTTATTTCTTGTTGTT----------------------------AGCATAACCCAAATTCT-AAAC---T-TG-TCTTCTGGTATT---CA---ACTG-------------------------------------T---------------------------AT--------------G-----------TT---------TTATGTACTTTCACAATAGCAGAATTTTTGTTTA-------------------------------------------AAATAGC-----AATTGATTTTGAAAAAA-----------AAAATGTT----------T---------TTTCAAGCAGTAGAT-------AT---------------------------------AGA-TGATACTACCTCAC-------------------------------------------GT---TCC-TTTGTATTTTT--ATTCCAGCATCCTAAGTTCGTGTTTGATATGGTTGTGATCTCCGTTTGCTCAGCGGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGTTCGTGTTTGATA............................2111.0010000100
....GTCCATGCAGGGAGGATTCATGGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATATGGTTGTGATCTCCGTTTGCTC......2711.0011000000
...............GAGGATTCATGGACTCCTTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAAGTTCGTGTTTGATATGGTTGTG....................2711.0011000000
droYak3
CGCTGTCCATGCAGGGAGGATTCATGGACTCCTTGGCATTTGCCACAGAGGTAAATATTTAAAAA-GATACATC------G--ACAGACACATTAAATCAATATCAATACTCAAG------TGATATCAC-------TA-TTCAACAAAAATAGCGTAGCTTGTTCTG---------------------------------------------------------------------------------AAT-------------------ATTTGATTTGTTTATTTTCT---GTT----------------------------AGCGTAACCCAAATTC-------------------------------------------------------------------------------------------------------GTACATTTG-TAA---GTATA--TAAGCCATTACTTGGTTTATGTACTTTCATAGAAGC-----------------------------------------------------ATAGAAATAGC-----GAATGAATTTGA-AAAA-----------AAAGGGTT---------------------TTGAAGCAG---AC---ATATGTAAGACAC----------------------C---AGA-TGGTCCTACCTCAC-------------------------------------------GT---TCT-TTTGT--ATTT---TTCCAGCATCCTAAGTTCGTATTTGATATGGTTGTGCTTTCTGTTTGCTCAGCGGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTTGTGCTTTCTGTTTGCTCAGCGG.29113.0013000000000013
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCTTTCTGTTTGCTCAGCGGT2514.00400000000004
.....................TCATGGACTCCTTGGCATTTGCCACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00202000000000
.........TGCAGGGAGGATTCATGGACTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00202000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTCGTATTTGATATGGTTGTGC...................2612.00202000000000
.........TGCAGGGAGGATTCATGGACTCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00202000000000
.....................TCATGGACTCCTTGGCATTTGCCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00202000000000
.....................TCATGGACTCCTTGGCATTTGCCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00211000000000
....................TTCATGGACTCCTTGGCATTTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAG---AC---ATATGTAAGACAC----------------------C---AGA-........................................................................................................................................2611.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGATATGGTTGTGCTTTCTGTT...........2611.00100000010000
....................TTCATGGACTCCTTGGCATTTGCCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
......................CATGGACTCCTTGGCATTTGCCACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTCGTATTTGATATGGTTGTGCT..................2711.00101000000000
CGCTGTCCATGCAGGGAGGATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.....TCCATGCAGGGAGGATTCATGGACTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...TGTCCATGCAGGGAGGATTCATGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTATTTGATATGGTTGTGCTTTC...............2511.00101000000000
..................GATTCATGGACTCCTTGGCATTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
....................TTCATGGACTCCTTGGCATTTGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATATGGTTGTGCTTTCTGTTTGC........2711.00101000000000
....................TTCATGGACTCCTTGGCATTTGCCACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..................GATTCATGGACTCCTTGGCATTTGCCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
...............GAGGATTCATGGACTCCTTGGCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
droEug1
CTCTGTCCATGCAGGGAGGATTCATGGACTCGTTGGCATTTGCCACAGAGGTATTTATATAAACA-AATTGGT---AAACGAAACAGACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGTATTTTGTTAATCTACTTACCTC----------AAAAC--ATATTATTTA----------------T-TAAC---TGCGATTGTTTCTATTGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATGTT----------T---------CTTTTACCGATGGATTGTGTAAATAACTTAC----------------------C---AGA-TGGTCCTACCTCAC-------------------------------------------GT---AATTTT--TATTTAT---TTCCAGCATCCAAAGTTCGTGTTTGATATGGTTGTGCTTTCGGTTTGCTCAGCGGTSizeHit CountTotal NormTotal
No Reads
droBia1
CGCTGTCGATGCAGGGCGGATTCATGGACTCCTTGGCATTTGCCACAGAGGTAGGTGTATAACGA--------------------------------------------------------------------------------------------AGC-------------------------------------------------------------------------AAT---GGAAA----GAAT-------------------ATTGGATTTGCTTGTTCTTCATAGCTTGAACAACCTAAAACCGGCTCCTGTTTA----------------T-AACC---T-CG-TTGTTTGGTTTGGCCCA---ACTG-------------------------------------T---------------------------AT--------------A-----------CATTATGT-------------------------------GGTTTATCA-------------------------------------------AA-----T------------------------------------------------TAGGTACTTT----AGCAA----T---TTATAAGTTTCTCGTATGTAGAGTACAACATACATGGGAAGT-ATGTCCTATATCAC-------------------------------------------TT---TCTTTC--TATTTATTTTGTTCAGCATCCCAAGTTCGTGTTTGACATGGTAGTGCTTTCTGTTTGCTCAGCGGTSizeHit CountTotal NormTotal
No Reads
droTak1
CGCTGTCGATGCAGGGCGGATTCATGGACTCCTTGGCATTTGCCACAGAGGTAGGTATATAAAAAAGACA--TCGTC---T--AAGG---------------------------------------------------------------AA---------------------------------------------------------------------------AGGAAAAAT---TTAAAACACGAAT-------------------ATTGCATTAGTTTGTGCTGTATAGATTGAAGAACCTGGATCCGCCTCTTTTT---------------------------T-TT-CCGTTAC--------------------------------------------------------------------------------------ATTTA-TA----GCATAGTTAAACAGATACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTT-CATATCAC-------------------------------------------CT---ACTTTT--TATTTAT---TTCTAGCATCCCAAGTTCGTGTTTGACATGGTTGTGCTTTCCGTTTGCTCAGCGGTSizeHit CountTotal NormTotal
No Reads
droEle1
CACTGTCGATGCAGGGCGGATTCATGGACTCGTTGGCATTTGCCACAGAGGTGGGTGTTTAAAGAAGATAC---GGT---G--AAAGAC--------------------------------------------------------------A---------------------------------------------------------------------------ACAACATGACTTC----ATAACAAGTTAGTTAACAAAGATAAATATTTAATGAATATATTCAGTATTGTT----------------------------TGGGTAACCCAAAATGCACACTATTT-CA-AACTAAAGTTTACCCAA---GCTG-------------------------------------A---------------------------AT--------------A-----------CAACC------------------------------TTTTTGTTTAACA-------------------------------------------CA-----T------------------------------------------------AAATTACTT--------AA----T---ATATAAAATTCAC----------------------C---AGAACGGTCCTACCTCAC-------------------------------------------AT---TCTATT--TCTTCAT---TTCTAGCATCCAAAGTTCGTGTTTGATATGGTGGTGCTTTCCATTTGCTCAGCGGTSizeHit CountTotal NormTotal
No Reads
droRho1
AAACATTTTTTTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------AA-AAGTCCTATCTCAC-------------------------------------------CT---TCTATA--TATTTAT---TTCTAGCATCCAAAGTTCGTGTTTGATATGGTTGTGCTTTCTATTTGCTCAGCCGTSizeHit CountTotal NormTotal
No Reads
droFic1
CGCTTTCGATGCAGGGAGGATTCATGGACTCGTTGACATTTGCCACAGAGGTAAGACCTTAAAAA-GCAATATCT----------------------------------------------------CTCGAAAACATA-TGCAACGAGAAA---------------------------------------------------------------------------AGGAAATGTATTA----ATAGGAAT-------------------GTTAGTTTTAAAT-------GCTGGT----------------------------TAAATAACCTAAATACC-GACC---T-TT-CCATTAGGTTTGCACCACCAGCTGCT------------------------------------------------------------------------------------------------------------------------------GTTTTGTTGATCATTCAAGCTTTCTTTAATTATTAATTCTAGTAAAAGCAAGTCA--AGC-----TAAATCGTTTAA-GAAGATCTTTATTTGTAAGGGTTCTTGTAAAGA-AAAACACTT--------A-----------ATATTATTCAC----------------------C---AGA-TGGTCCTACCTCAC-------------------------------------------GT---TCTATT--TATTTA----TTCCAGCACCCAAAGTTCGTGTTTGATATGGTGGTGCTTTCCATTTGCTCAGCGGTSizeHit CountTotal NormTotal
No Reads
droKik1
TTCTTTCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAT---TTCCAGCATCCAAAGTTTGTGTTTGACATGGTTGTGCTTTCCATTTGCTCAGCGGTSizeHit CountTotal NormTotal
No Reads
droAna3
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTACCTCAC-------------------------------------------TT---ATACTT--TGTTTAT---TTCCAGCATCCTAAATTCGTATTCGATATGGTTGTGCTCTCTATTTGCTCAGCGGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTTGTGCTCTCTATTTGC........2311.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTTGTGCTCTCTATTTGCC.......2411.001010000
droBip1
TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT---TTTCAGCATCCAAAGTTCGTGTTCGACATGGTTGTGCTCTCTATTTGCTCAGCGGTSizeHit CountTotal NormTotal
No Reads
dp5
CGCTGTCGATGCAGGGCGGATTCATGGACTCCCTGTCCTTTGCCACAGAGGTATATATGTCCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................CATGGACTCCCTGTCCTTTGCCACAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020200000000
.........TGCAGGGCGGATTCATGGACTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
droPer2
CGCTGTCGATGCAGGGCGGATTCATGGACTCCCTGTCCTTTGCCACAGAGGTATATATGTCCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
CGCTGTCGATGCAGGGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
........ATGCAGGGCGGATTCATGGACTCCCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droWil2
CTTTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTCATTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--ATTG---TTATAGCATCCGAAGTTTGTGTTTGACATGATTATACTATCCATATGCTCAGCTGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGACATGATTATACTATCC..............2211.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGAAGTTTGTGTTTGACATGA.........................2411.00100010
droVir3
ACCGAACTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTGT-TTAAT---TTATAGCATCCCAAGTTTGTCTTCGACATGGTTGTTCTATCCATATGCTCTGCGGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTTCGACATGGTTGTTC...................2111.001000000000000000000000000000000000000000000000000000000000000001
droMoj3
CGCTCTCCATGCAGGGCGGCTTCATGGACTCACTGGCATTTGCCACAGAGGTGAGTG-----------------------------------------------------------------------------------------------------GCCTTAATTTAAATTCTTTTTATTCATATACTAATATTAAAAACTAAATGCAGAAGGGCCCTTAAAGAAGGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGATAATGCTTATTTATATATTTCTGTAGTTTTTAA--TTTG-----------TT---------TATTGAAATTGCCCATTCGCATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATTCTTAAATTTCT------AACAGCTAA-----------CCAATTTA-ATTGT-TTAAC---TTATAGCATCCCAAGTTTGTCTTCGACATGGTTATTCTATCCATATGCTCTGCTGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CGCTTTCCATGCAGGGCGGCTTCATGGACTCGCTAGCCTTTGCCACGGAGGTGAGTT-ACCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGT-------------------CTTGAATGTGTTTATTTC----------------------------------------------------------------------------------ATTATTTGCTGATCTACGTATAGATTAAAATCGTATATTAAACTCTATTCTTCATGCTTAGTC-GATATTT--GTACACTAT-A--TTTG-----------TT---------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAC----------------------G---AGA-A-------------CACATTTTCAAATTCCATACGGAAACAGCTAACAATGGTTAACCCAATTGT-TTTGT--TTAATTTATGTAGCATCCCAAGTTTGTGTTTGATATGGTTGTGCTCTCCATTTGCTCAGCGGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:18 PM