ID:

dsi_11738

 Coordinate:

3l:16375428-16375577 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-21.8 -21.6 -21.6

Flybase annnotation

exon [3l_16375318_16375427_-]; CDS [3l_16375318_16375427_-]; intron [3l_16375428_16376176_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTCCAGTCCACTCGCTCTACTCCACTCCACTCACTCGCTCACTCGATCACGTTCGTCGCGCTGTGCTCCATTCGTAATTTCTTCTCATTACATTGATTCCTACCCGGGGCTGAATTTGCTAACATTGCCTTCCTTTTTATGTCGTGTCTTCCCACTATAAACGGTCTGGATCTGGATTTGTTTGGATGAACCTTCCGCAGTGTGATTGTTCAGGCCGATGGACAGCTCCGCACAGGATTCGATGTGGTGG
**************************************************(((((((.((......((((...(((((........)))))...(((.((...(((((((................)))).....((((((..(((......))))))))))))...)))))))))......))))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
...............................................................................................................................................................................................................GTTCAGGCCGATGGACAGCT....................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TGTGATTGTTCAGGCCGATGGACAGC........................ 26 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TTCTGTGATTGTTCAGGCCGATGGAC........................... 26 3 1 2.00 2 0 0 1 0 0 0 0 1 0 0
......................................................................................................................................................................................................CGTGTGATTGTTCAGGCCGATGGAC........................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTCTGTGATTGTTCAGGCCGATGGA............................ 25 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................CCGATGGACAGCTCCGCACAGG.............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTTGTTTGGATGAACCTTCCGCAGT................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................TCACTCGATCACGTTCGTCGCGCTG........................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGATGGACAGCTCCGCACAGGATT........... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................TATTCGACTCCACTTACTCGC.................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................GATGGACAGCTCCGCACAGGATTC.......... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CAGGCCGATGGACAGCTCCGTACAGGAT............ 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGACAGCTCCGTACAGGATTCGA........ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................GATTCCTACCCGGGGA............................................................................................................................................ 16 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................GATGGACAGCTCCGCACAGGATT........... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GTGATTGTTCAGGCCGATGGACAGCT....................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GATTGTTCAGGCCGATGGAC........................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATCTGGATTTGTTTGGATGA............................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................CCGCACAGGATTCGATGTGGTG. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGACAGCTCCGCACAGGATTCGAT....... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................ATTCCATTGATTCATATCCGG............................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................CGGTCTGGATATGGATTCTT..................................................................... 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GACTTGTTTGGATGA............................................................. 15 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
...................TTCGACTCCACTTACTCGC.................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
........................CTAGACTCACTCGCTC.................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GAGGTCAGGTGAGCGAGATGAGGTGAGGTGAGTGAGCGAGTGAGCTAGTGCAAGCAGCGCGACACGAGGTAAGCATTAAAGAAGAGTAATGTAACTAAGGATGGGCCCCGACTTAAACGATTGTAACGGAAGGAAAAATACAGCACAGAAGGGTGATATTTGCCAGACCTAGACCTAAACAAACCTACTTGGAAGGCGTCACACTAACAAGTCCGGCTACCTGTCGAGGCGTGTCCTAAGCTACACCACC
**************************************************(((((((.((......((((...(((((........)))))...(((.((...(((((((................)))).....((((((..(((......))))))))))))...)))))))))......))))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
...................................................................................GAGTAATGTATCGAAGGATGGT................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0
............GCGAGATGTAGTGAGGGGAGT......................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................ACATACTAGGAAGGCGTC.................................................. 18 2 3 0.33 1 0 1 0 0 0
...................................GCAAGTGAGCTAGTGGAA..................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 1 0
................................................................................................AAGGGTGGGCCCTGACTT........................................................................................................................................ 18 2 4 0.25 1 0 1 0 0 0
..............................AGTGAGCTAGTGACCTAGTGA....................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 1
................................................................................................................................................................................................................................CGCGGGCTGTCCTAAGCT........ 18 3 20 0.15 3 0 3 0 0 0
..........................................................................................................................................................................................................ACTCACAGGTCCGGCTA............................... 17 2 17 0.12 2 0 0 2 0 0
..................................................................................................................................................................................................GGAGTGACACTAACAAG....................................... 17 2 12 0.08 1 0 0 1 0 0
.........................................................................................................................................................................................CCCTTGGAAGGCGTC.................................................. 15 2 20 0.05 1 0 1 0 0 0
........GTGACGGAGATGAGGTG................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0
......................GTGAGGTCAGTGATCG.................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 04:27 AM