ID:dsi_11690 |
Coordinate:3r:17230483-17230612 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -14.4 | -14.2 | -14.2 |
 |
 |
 |
exon [3r_17229985_17230482_-]; CDS [3r_17229985_17230482_-]; CDS [3r_17230613_17230952_-]; exon [3r_17230613_17230952_-]; intron [3r_17230483_17230612_-]
No Repeatable elements found
| mature | star |
| ##################################################----------------------------------------------------------------------------------------------------------------------------------################################################## TGGATCTTAAGAATTATCGCGTCCAATTGAAAATGTCTGGAGATGACCAGGTACTATTGTCCTTCATCAATCCAATCACGTATTGATTGTCATATTATAGTAAGCTTTGACAAAATCGTATGTTTTAGGGACCAGAAAAATCCTAAAGTAAACTTCAACGTTTTCGGAATTCACATTTAGGTCATACAGCGGTACTCGAAGATCGTCAAAGTGCTGGAGGCAAAAGTGGA **************************************************....................(((....((((((.((((((((...............)))))..))))))))).....)))((.(((((......(((....))).....))))))).............************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553486 Makindu_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR553485 Chicharo_3 day-old ovaries |
GSM343915 embryo |
|---|---|---|---|---|---|---|---|---|---|
| .......................................................................GCAATCACGTATTGA................................................................................................................................................ | 15 | 1 | 6 | 18.00 | 108 | 108 | 0 | 0 | 0 |
| ............................................................................................................................................................................ACATTTAGGTCAGACAGG........................................ | 18 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 |
| ..........................................................................ATCACGTATTGACTG............................................................................................................................................. | 15 | 1 | 3 | 1.00 | 3 | 3 | 0 | 0 | 0 |
| .....................TCCAATTGAAAATGTCTGGAGATGACCAGG................................................................................................................................................................................... | 30 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 |
| ........................................................................CAATCACGTATTGACTGT............................................................................................................................................ | 18 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ..........................................................................ATCACGTATTGACTGT............................................................................................................................................ | 16 | 1 | 3 | 1.00 | 3 | 3 | 0 | 0 | 0 |
| .........................................................................AATCACGTATTGACTGTT........................................................................................................................................... | 18 | 2 | 4 | 0.75 | 3 | 3 | 0 | 0 | 0 |
| ........................................................................CAATCACGTATTGACTGTTG.......................................................................................................................................... | 20 | 3 | 8 | 0.75 | 6 | 6 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................GGTACGCGAAGGTCGTCATA.................... | 20 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 |
| ........................................................................CAATCACGTATTGACTGTT........................................................................................................................................... | 19 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 |
| .................................TGACTGGAGATGACC...................................................................................................................................................................................... | 15 | 1 | 9 | 0.44 | 4 | 0 | 4 | 0 | 0 |
| ...............................................................................................................................................................................................GTACTCGAAGGTCGTC....................... | 16 | 1 | 3 | 0.33 | 1 | 0 | 1 | 0 | 0 |
| .........................................................................AATCACGTATTGACT.............................................................................................................................................. | 15 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 |
| .......................................................ATTGTCCTTCATCAA................................................................................................................................................................ | 15 | 0 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 |
| .................................................................................................................................................................................................ACTCGAAGGTCGTCATA.................... | 17 | 2 | 13 | 0.23 | 3 | 0 | 3 | 0 | 0 |
| ...............................................................................................................................................................................................GTACTCGAAGGTCGTCAT..................... | 18 | 2 | 5 | 0.20 | 1 | 0 | 1 | 0 | 0 |
| ............................................................................................................................................................................................ACGGTACGCGAAGGTCGTC....................... | 19 | 3 | 8 | 0.13 | 1 | 0 | 1 | 0 | 0 |
| .................................................................................ATTGATGGTCTTATTCTAGT................................................................................................................................. | 20 | 3 | 8 | 0.13 | 1 | 0 | 0 | 0 | 1 |
| .....................................................................................................................................................................................................GAAGGTCGTCATAGTGC................ | 17 | 2 | 10 | 0.10 | 1 | 0 | 1 | 0 | 0 |
| .........................................................................AATTACGTATTGACTGT............................................................................................................................................ | 17 | 2 | 11 | 0.09 | 1 | 1 | 0 | 0 | 0 |
| .................................................................................................................................................................................................ACTCGAAGGTCGTCA...................... | 15 | 1 | 13 | 0.08 | 1 | 0 | 1 | 0 | 0 |
| ............................................................................................................................................................................ACATTTAGGTCAGACAGGA....................................... | 19 | 3 | 13 | 0.08 | 1 | 0 | 0 | 1 | 0 |
| ..................................GACTGGAGATGACCA..................................................................................................................................................................................... | 15 | 1 | 16 | 0.06 | 1 | 0 | 1 | 0 | 0 |
| .......................................................ATTGTACTTCATCAATA.............................................................................................................................................................. | 17 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 |
|
ACCTAGAATTCTTAATAGCGCAGGTTAACTTTTACAGACCTCTACTGGTCCATGATAACAGGAAGTAGTTAGGTTAGTGCATAACTAACAGTATAATATCATTCGAAACTGTTTTAGCATACAAAATCCCTGGTCTTTTTAGGATTTCATTTGAAGTTGCAAAAGCCTTAAGTGTAAATCCAGTATGTCGCCATGAGCTTCTAGCAGTTTCACGACCTCCGTTTTCACCT
**************************************************....................(((....((((((.((((((((...............)))))..))))))))).....)))((.(((((......(((....))).....))))))).............************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
SRR553485 Chicharo_3 day-old ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR902008 ovaries |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
M024 male body |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................TCGAAACTGTTTTAGCATA............................................................................................................. | 19 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................AAGCCTTAAGTGAAAATCCAGTATGT.......................................... | 26 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .................................................CCATGATAACGGGAAGTAGTTAGGTT........................................................................................................................................................... | 26 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................CAGTCTCACGACCTCCGTTCT..... | 21 | 2 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................TGGTGCAGAACTAACAGGATA....................................................................................................................................... | 21 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................ACGCCATAAGCTTCCAGCAGT...................... | 21 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .........................................................................................................AAACTGTTTTAGAATAAAAAA........................................................................................................ | 21 | 2 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ......................................CCTCTACAGGTCAGTGATA............................................................................................................................................................................. | 19 | 3 | 14 | 0.36 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 0 |
| .............................................................................................................................ATCCCTAGTCTTGTCAGGAT..................................................................................... | 20 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .........................................................................TTAGTGCATAACTGACAA........................................................................................................................................... | 18 | 2 | 4 | 0.25 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................CTGGTTAGTGCATAACTA............................................................................................................................................... | 18 | 2 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................GAACAGCAAGTCGTTAGGTTA.......................................................................................................................................................... | 21 | 3 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...................................................................................................................................................................................TCAGAATGTCGCCATGA.................................. | 17 | 2 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ................................................................GCAGTTTTGTTAGTGCATAA.................................................................................................................................................. | 20 | 3 | 9 | 0.11 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................ACGCCATAAGCTTCCAGCA........................ | 19 | 3 | 14 | 0.07 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...................................AGACCTCTACTGGTT.................................................................................................................................................................................... | 15 | 1 | 14 | 0.07 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................GTGCAGAACTAACAGGGTA....................................................................................................................................... | 19 | 3 | 14 | 0.07 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..............................................................................................................................................CATTTCATTTGAAGT......................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..........................................................................................GTCTAATCTCATTCGA............................................................................................................................ | 16 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/23/2015 at 02:42 PM