ID:

dsi_1169

Coordinate:

3r:10580968-10581038 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-12.2	-12.1	-12.1

Flybase annnotation

CDS [3r_10580796_10580967_-]; exon [3r_10580438_10580967_-]; CDS [3r_10581039_10581545_-]; exon [3r_10581039_10581545_-]; intron [3r_10580968_10581038_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------################################################## CTACTTACCGCATCCGGATGCACTCTCATGCTGCCGGAAACGAACAATAGGTAAGGGTCATGGTATTTGAAATGATGGAAGGAGGCGTGTTGAAATGTGTTTTCCTTTTCATTCTCCACAGACAACTGCCCATCACATTGGCTGATGGAGAGGCATTTGGGAAGGGCGAAT ************************************************..........(((....(((((....((((.((.((((......)))).)))))).)))))....)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR618934 dsim w501 ovaries	SRR1275487 Male larvae	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR1275483 Male prepupae	SRR553487 NRT_0-2 hours eggs
..................................................................................................GTTTTCCTTTTCATTCTC.......................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
.............................................................................GAAGGAGGCGTGGTGA..............................................................................	16	1	2	0.50	1	0	1	0	0	0	0	0
...............................................................................AGAAGGCGTGCTGGAATGTG........................................................................	20	3	9	0.44	4	0	0	2	2	0	0	0
.........................................................................................................TTTTCCTTCTCCACAGA.................................................	17	1	6	0.17	1	0	0	0	0	1	0	0
..................................................................................AGGCGTGCTGGAATGTG........................................................................	17	2	19	0.11	2	0	0	0	0	0	2	0
..............................CTGCCGGAACCGACCAA............................................................................................................................	17	2	19	0.05	1	0	0	0	0	1	0	0
.....TACCGAATCCTGATGAACT...................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1
...........................................ACTATAGGTAAGGGC.................................................................................................................	15	2	20	0.05	1	0	1	0	0	0	0	0

Anti-sense strand reads

GATGAATGGCGTAGGCCTACGTGAGAGTACGACGGCCTTTGCTTGTTATCCATTCCCAGTACCATAAACTTTACTACCTTCCTCCGCACAACTTTACACAAAAGGAAAAGTAAGAGGTGTCTGTTGACGGGTAGTGTAACCGACTACCTCTCCGTAAACCCTTCCCGCTTA ************************************************..........(((....(((((....((((.((.((((......)))).)))))).)))))....)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M023 head	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	M053 female body	GSM343915 embryo
...........................................................................................................AAGTAAGAGGTGTCTGTTGACGGGT.......................................	25	0	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................ACAGAAGGAAAAGTAGGAGGCG....................................................	22	3	4	0.25	1	0	0	1	0	0	0	0
..............................GACGGCCTTTGCTTCTTC...........................................................................................................................	18	2	16	0.13	2	0	2	0	0	0	0	0
...........................................TCTTATCCATTTCCAGTA..............................................................................................................	18	2	8	0.13	1	0	1	0	0	0	0	0
....................................................................................................................................AGTGTAACCTACTAC........................	15	1	11	0.09	1	1	0	0	0	0	0	0
..........................................................................................................AAAGGAAGAGGTGTCT.................................................	16	1	13	0.08	1	0	0	0	0	1	0	0
.......................................................................................................................TCTGTTGACTGGTACTG...................................	17	2	14	0.07	1	0	0	0	1	0	0	0
...............................................................................CCCTCCGCACGACTTGACA.........................................................................	19	3	20	0.05	1	0	0	0	0	0	1	0
..............................GATGGCCTATGCTTG..............................................................................................................................	15	2	20	0.05	1	1	0	0	0	0	0	0
................................................................................CATCCGGGCAACTTTACAC........................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1
......................................................................................................................GTCTGTTGAAGGGTATT....................................	17	2	20	0.05	1	0	0	0	1	0	0	0

Generated: 04/24/2015 at 10:45 AM