ID:

dsi_11685

 Coordinate:

3r:4208508-4208657 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.6 -13.6

Flybase annnotation

CDS [3r_4208318_4208507_+]; exon [3r_4208034_4208507_+]; intron [3r_4208508_4209016_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAAGTATAGCCGTGATCTGGATTCCGTGGTGCAGAGAGCCAGAGACGCAGGTTTGTATGCCAGATACAGATACTACATGTGCAGGCATAATTAATAAGGCCCGGGCAGTGTCTTCGTTCTGGGGCGAGGCTGTGAAAACACCCAGACAACCAGAAGGTCAGGCTATTGGCGAGCAACAAGTGTGCCTGTGTTTTGATATATGTATGCATGGGAGATGGCATTACGAATTCAATGGGAACGTAGCTTGAGA
***********************************************************************************((...................((((...((((((......))))))))))........)).********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 GSM343915
embryo
 M053
female body
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
...................................................................................GGCATAATTAATAAGGCC..................................................................................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0
....................................................................................................................TCCTGGGGCGAGGCTATGAAAAA............................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0
...................GATTCCGTGGTGCAGAGA..................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................CTGGGGCGAGGCTGTGAAAACACCCA.......................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................AGGTATGCATGGGAGA................................... 16 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............ATCTGGATTCCGTGGTGCAGAGAGCCA................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AATCCATAGGAACGTAGCTT.... 20 3 3 0.67 2 0 0 0 0 2 0 0 0 0
..................................................................................................................................................CATCCAGAAGGTCAGG........................................................................................ 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...................GACTCCGTGGCGCAGGGAGCC.................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................GAACGTACCTTGAGA 15 1 10 0.30 3 1 0 0 0 0 0 0 2 0
....................ATTCCGTGGGGCGGAGA..................................................................................................................................................................................................................... 17 2 14 0.29 4 4 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AATCCAATAGGAATGTAGCTT.... 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0
..............................................................................................GAAGGCCCGGGCAGT............................................................................................................................................. 15 1 5 0.20 1 0 0 0 0 0 0 1 0 0
..................................................................................................GCCCGGGCAGCTTCTTCG...................................................................................................................................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0
.......AGTCGTGATCTGGAT.................................................................................................................................................................................................................................... 15 1 6 0.17 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATTCCATAGGAATGTAGCTT.... 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0
...............................................................................................................CTTTGTTCTGGGGGGAGG......................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................AATTCCATAGGAATGTAGCT..... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................ACTGGAAGGTAGCTTGAGA 19 3 17 0.06 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CCATTGGAACGTACCTTG... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................ATCCATGGGAATGTAGCTT.... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.....GTAGCCGTGATCGGGCTT................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................GGAACGTACCTTGAAA 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TTTCATATCGGCACTAGACCTAAGGCACCACGTCTCTCGGTCTCTGCGTCCAAACATACGGTCTATGTCTATGATGTACACGTCCGTATTAATTATTCCGGGCCCGTCACAGAAGCAAGACCCCGCTCCGACACTTTTGTGGGTCTGTTGGTCTTCCAGTCCGATAACCGCTCGTTGTTCACACGGACACAAAACTATATACATACGTACCCTCTACCGTAATGCTTAAGTTACCCTTGCATCGAACTCT
**********************************************************************************************************((...................((((...((((((......))))))))))........)).*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
....................................................................................CGTATTAATTATTCCGGGC................................................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0
....................................TCGGTCTCTGCGTCCAAACAT................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.....TATCGGCACTAGACCTAA................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................CTTTTGTGGGTCTGTTGGTCTTCCAG........................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
......................AGGCACCACGTCTCTCGGTCT............................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................ACCACGGCTCTCGGTCTCAGC........................................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 1 0 0 0
.........................................................................CTGTACAAGTCCGTATTA............................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 1 0
......................................................................................................................................TTTTGTGGGTATGAAGGTC................................................................................................. 19 3 20 0.25 5 0 0 0 0 0 0 0 5
...................................................................................................................CAAGACCCCGGTCGGA....................................................................................................................... 16 2 20 0.15 3 0 0 0 0 0 3 0 0
..................................................................................................................................................GTTAGTCTTCCAGGCCG....................................................................................... 17 2 8 0.13 1 0 0 0 0 0 1 0 0
.....AATCGCCACTAGACCTA.................................................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 1 0 0

Generated: 04/23/2015 at 11:06 PM