ID:

dsi_1168

 Coordinate:

3l:11656785-11656934 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-18.0 -18.0 -17.9

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. 2l:5009617-5009631 -
  2. 2l:19576676-19576690 -
  3. 2r:7178611-7178625 -
  4. 2r:11075663-11075677 -
  5. 2r:14714523-14714537 +
  6. 2r:15333189-15333203 -
  7. 3l:3299371-3299385 -
  8. 3l:6134483-6134497 -
  9. 3l:6766144-6766158 +
  10. dsi_1168  3l:11656900-11656914 -
  11. dsi_21411  3r:6196144-6196158 +
  12. dsi_20952  3r:9342551-9342565 +
  13. 3r:17530233-17530247 -
  14. 3r:19326659-19326673 +
  15. x:6577672-6577686 -
  16. x:6646668-6646682 -
  17. x:7164217-7164231 -
  18. x:7512246-7512260 -
  19. x:13194201-13194215 +
  20. x:14337423-14337437 -
star

Sense Strand Reads

AACAGGGAACTCTTCAATACCATCAGTCAGTTTGGCAACAACGGGAATGCGTAAGTAGTCGGAAAAGTCAAGAAAGAAAGAAAAACATGTTTGGGGTATTTCAAAAGGGATACATTATGATTCTGTGGTTTTGAAATTGGCAAAAAATGTTCAAAATTTATTTTGAAAAGTTACACGCTCTAGCTCAATCAATTTATTGTGATTTTATAACTGCCATGCCTTAATAGAATTCCTTATTCATTATTTGTAT
**************************************************((((((.(((((.....((((((.....((((...((((......(((((((....)))))))..)))).))))....))))))..)))))........(((((((....))))))).(((((.......)))))......))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
.ACAGGGAACTCTTCAATACCATCAGTC.............................................................................................................................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................TGATTCTGTGTTTGTGAAGTTGGCA............................................................................................................ 25 3 1 1.00 1 0 1 0 0 0 0 0
...............AATACCATCAGTCAGTTTG........................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
........................AGTCAGTTTGGCAACAAC................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0
............................AGTAGGGCAGCAACGGGAAT.......................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 1 0
...................CCATCATTCAGTTGGGCA..................................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 1 0 0 0
.................TGCCATCATTCAGTTGGGCA..................................................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 1 0 0 0
......................................................................AGAAAGAAAGAAAAA..................................................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 1 0 0
.....................................................................AAGAAAGAAAGAAAA...................................................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 1 0 0
........................................................................................................................................................................................GCGATCAAGTTATTGTGA................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

TTGTCCCTTGAGAAGTTATGGTAGTCAGTCAAACCGTTGTTGCCCTTACGCATTCATCAGCCTTTTCAGTTCTTTCTTTCTTTTTGTACAAACCCCATAAAGTTTTCCCTATGTAATACTAAGACACCAAAACTTTAACCGTTTTTTACAAGTTTTAAATAAAACTTTTCAATGTGCGAGATCGAGTTAGTTAAATAACACTAAAATATTGACGGTACGGAATTATCTTAAGGAATAAGTAATAAACATA
**************************************************((((((.(((((.....((((((.....((((...((((......(((((((....)))))))..)))).))))....))))))..)))))........(((((((....))))))).(((((.......)))))......))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
..........AGAAGTTATAGAAGTTAGTCAA.......................................................................................................................................................................................................................... 22 3 4 0.25 1 0 1 0 0 0
.............AGTTATGGTGGTCAGCCA........................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0
..................................................................................................................................................................AACATATCAGTGTGCGAGAT.................................................................... 20 3 9 0.11 1 0 0 1 0 0
..........................................................................................................................................................................AAGCTGCGAGATGGAGTTA............................................................. 19 3 13 0.08 1 0 0 0 0 1
.........................................................CAGCCATTGCAGTTTTTTC.............................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 1 0
.......TTGAGGTGTGATGGTAGTC................................................................................................................................................................................................................................ 19 3 15 0.07 1 1 0 0 0 0
.......TTGAGGAGTTATGGCA................................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0
.............AGTCATGGTGGTCAGACAA.......................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0

Generated: 04/24/2015 at 10:36 AM