ID:

dsi_11677

 Coordinate:

2r:5379423-5379483 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5378948_5379422_+]; CDS [2r_5378948_5379422_+]; CDS [2r_5379484_5379656_+]; exon [2r_5379484_5379656_+]; intron [2r_5379423_5379483_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------##################################################
TACAAAGTCAAGTGGGTGCAGAGGGGGTACAAGACGCCGCTGATTGACAAGTAAGCACGATGTGCTAATAAGGATCATGAGTTTGTAACTAAATCTTATATTCATTTACAGACTGGTGTTCAAGAAGGTGGCAAAGCTTATGGGTGGCAAAGTGCGCATTA
**************************************************..............((......((..(((((.((.......)).)))))..))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
..........................GTACAAGACGCCGCTGATTGACAAACT............................................................................................................ 27 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................................TGACAAACTGGTGTTCAAGAAGGTGG.............................. 26 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................................ACAGACTGGTGTTCATGA.................................... 18 1 1 1.00 1 0 0 0 1 0 0
............................ACAAGACGCCGCTGATTGACAAACT............................................................................................................ 25 3 1 1.00 1 0 0 1 0 0 0
........................GGGTACAAGACGCCGCTGATT.................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................TTGACAAACTGGTGTTCAAGAAGGT................................ 25 2 1 1.00 1 1 0 0 0 0 0
.........AAGTGGGTGCAGAGGGG....................................................................................................................................... 17 0 1 1.00 1 0 1 0 0 0 0
...........GTGGGTGCAGAGGGGGTA.................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................GTTCAAGAAGGTGGCA............................ 16 0 1 1.00 1 0 1 0 0 0 0
......................GGGGGTACAAGACGCCGCTGATTGACA................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................GACAAACTGGTGTTCAAGAAGGT................................ 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................................GACAAACTGGTGTTCAAGAAGGTGGC............................. 26 2 1 1.00 1 1 0 0 0 0 0
.........................GGTACAAGACGCCGCTGATTGACAAACT............................................................................................................ 28 3 1 1.00 1 1 0 0 0 0 0
........CAAGTGGGTGCAGAGGGG....................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
...........GTGGGTGCAGAGTGGGAA.................................................................................................................................... 18 2 6 0.67 4 4 0 0 0 0 0
..............................................................TGTTACTAAGGATCAGGAGT............................................................................... 20 3 4 0.25 1 0 0 0 0 1 0
..............................................................................................................................................GGTGGCAAAGTGGGCA... 16 1 19 0.05 1 0 0 0 0 0 1
.....................................................................AAGGATCATGAGATTAT........................................................................... 17 2 20 0.05 1 0 1 0 0 0 0
..........................................................................TCACGAGTTTGTGACT....................................................................... 16 2 20 0.05 1 0 1 0 0 0 0
...................................................................................................................GTGGTCAAGAAGGTG............................... 15 1 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

ATGTTTCAGTTCACCCACGTCTCCCCCATGTTCTGCGGCGACTAACTGTTCATTCGTGCTACACGATTATTCCTAGTACTCAAACATTGATTTAGAATATAAGTAAATGTCTGACCACAAGTTCTTCCACCGTTTCGAATACCCACCGTTTCACGCGTAAT
**************************************************..............((......((..(((((.((.......)).)))))..))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M024
male body
..............................TGCTGCGGCGACTAGCTGTTC.............................................................................................................. 21 2 2 0.50 1 1 0
.....................................................................................................................CAAATTCTGCCACCGTTTCA........................ 20 3 10 0.10 1 0 1

Generated: 04/23/2015 at 01:41 PM