ID:

dsi_11674

 Coordinate:

x:20178855-20179070 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.7 -13.5 -13.2 -12.9

Flybase annnotation

three_prime_UTR [x_20178793_20183979_-]; exon [x_20178793_20184177_-]

No Repeatable elements found

mature
  1. dsi_11674  x:20178979-20179005 -
  2. node_18853:102-128 -
star
  1. dsi_11674  x:20178940-20178960 -
  2. node_81501:146-166 -

Sense Strand Reads

############################################################################################################################################################################################################################################################################################################################
TGAAAGTGTGCAACTCTCTGTTCGGCACCAACTTCGCCTACGGCGACACCGCTTAAGACACCAACTCCAACCGCAGACTCCAACTGCCGACAGCAACACACCTCGCCAACACGCCTCTCTTAACGGCCAGCAATCAGAAGATTGCGACCCTGTCGTCAAATGCGCAGCTTTAAGAATTCCTTTTCTGTGAAGGAGAAGAGGCATATTAAACAAGAATTTTCCAATTTTGCTTGCATTTGGGACAGCTCCTACCCATGATTTTTTAGGTGGGCCGCAGCCGTTTTCAACCACGAGTAATCTTGAACTGCAGGATTAT
*******************************************************************************************************************((.....(((((..((((((....))))))......))))).................))......*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 O001
Testis
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M025
embryo
 M024
male body		 GSM343915
embryo
...........................................................................................................................................................................................................................................................................................TCAACCACGAGTAATCTTGAACTGCA....... 26 0 2 5.00 10 0 1 3 3 0 0 3 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TTCAACCACGAGTAATCTTGAACTGCA....... 27 0 2 4.00 8 3 0 3 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TCAACCACGAGTAATCTTGAACTGC........ 25 0 2 3.00 6 3 0 3 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TCTCTTAACGGCCAGCAATCAGAAGAT.............................................................................................................................................................................. 27 0 2 2.50 5 1 0 0 2 0 0 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TTCAACCACGACTAATCTTGAACTGC........ 26 1 2 2.50 5 2 0 2 0 0 0 1 0 0 0 0 0 0
...............................................................................................................CGCCTCTCTTAACGGCCAGCAATCAGA.................................................................................................................................................................................. 27 0 2 2.50 5 0 0 3 0 0 0 0 1 1 0 0 0 0
.....................................................................................................................TCTTAACGGCCAGCAATCAGAAG................................................................................................................................................................................ 23 0 2 2.50 5 0 0 0 0 0 5 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TTCAACCACGAGTAATCTTGAACTGC........ 26 0 2 2.50 5 3 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTAACGGCCAGCAATCAGAAGATTGCG.......................................................................................................................................................................... 27 0 2 2.50 5 1 3 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................GGCCAGCAATCAGAAGATTGCGA......................................................................................................................................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AATCAGAAGATTGCGACCCTG.................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TTTCAACCACGAGTAATCTTGAACTGC........ 27 0 2 2.00 4 3 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTAACGGCCAGCAATCAGAAGATTGCGA......................................................................................................................................................................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TCAACCACGAGTAATCTTGAAC........... 22 0 3 1.67 5 0 0 0 0 0 5 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................AACCACGAGTAATCTTGA............. 18 0 3 1.67 5 0 0 0 0 0 5 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TTTCAACCACGACTAATCTTGAACTGCA....... 28 1 2 1.50 3 0 0 2 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TTTCAACCACGAGTAATCTTGAACTGCA....... 28 0 2 1.50 3 1 0 0 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................TGCGCAGCTTTAAGAATTCCT....................................................................................................................................... 21 0 2 1.50 3 0 0 0 0 0 3 0 0 0 0 0 0 0
......TGTGCAACTCTCTGTTCGGCA................................................................................................................................................................................................................................................................................................. 21 0 2 1.50 3 1 0 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................TCTCTTAACGGCCAGCAATCAGAAGA............................................................................................................................................................................... 26 0 2 1.50 3 2 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TCAACCACGACTAATCTTGAACTGCA....... 26 1 2 1.50 3 2 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................TTAACGGCCAGCAATCAGAAGATTGC........................................................................................................................................................................... 26 0 2 1.50 3 0 3 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TGATTTTTTAGGTGGGCCGCAG....................................... 22 0 3 1.33 4 0 0 0 0 0 4 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TGATTTTTTAGGTGGGCCGCA........................................ 21 0 3 1.33 4 0 0 0 0 0 4 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TAGCTTGCATTTGGGACAGCTC.................................................................... 22 1 2 1.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TTGCATTTGGGACAGC...................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AACGGCCAGCAATCAGAAGATTGCGAC........................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCCTTTTCTGTGAAGGAGAAGAG.................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............TCTCTGTTCGGCACCAACTTCGCCTAC................................................................................................................................................................................................................................................................................... 27 0 2 1.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................TGAAGGAGCTGAGGCATATTAA........................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TGCATTTGGGACAGC...................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CAGAAGATTGCGACCC...................................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TTTCAACCACGACTAATCTTGAACTGC........ 27 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....AGTGTGCAACTCTCTGTTCGG................................................................................................................................................................................................................................................................................................... 21 0 2 1.00 2 0 0 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................TCAGAAGATTGCGACCCTG.................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................CTCTCGTCAACTGCGCAGCATT................................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................CAGACTCCAACTGCCGACAGCAACA.......................................................................................................................................................................................................................... 25 0 4 1.00 4 3 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCAGAAGATTGCGACCCTGACGCCAAA............................................................................................................................................................ 27 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................ATCAGAAGATTGCGA......................................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................AACCACGACTAATCTTGAACTGCA....... 24 1 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCAGAAGATTGCGACCCTGACGCCA.............................................................................................................................................................. 25 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TCAACCACGAGTAATCTTGAACTG......... 24 0 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................TCTTAACGGCCAGCAATCAGAAGA............................................................................................................................................................................... 24 0 2 1.00 2 0 0 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................TTGCATTTGGGACAGCTC.................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTTAGCTTGCATTTGGGACAG....................................................................... 21 1 2 1.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATTTAGCTTGCATTTGGGACA........................................................................ 21 1 2 1.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TGCTTGCATTTGGGACAGCTCCTA................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................TTCGCCTACGGCGACACCGCTTAAGA.................................................................................................................................................................................................................................................................. 26 0 2 1.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................ATCAGAAGATTGCGACCCTG.................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................TTTTCAACCACGAGTAATCTTGAACTGC........ 28 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTAACGGCCAGCAATCAGAAGATTGCGAC........................................................................................................................................................................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................ACACCAACTCCAACCGCAGAC.............................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TAGCTTGCATTTGGGACAGCT..................................................................... 21 1 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TCAACCACGACTAATCTTGAACTGC........ 25 1 2 1.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................CAGAAGATTGCGACCCTGACG................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................GCCAGCAATCAGAAGATTGTG.......................................................................................................................................................................... 21 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TGATTTTTTAGGTGGGCCGCAGCCGTT.................................. 27 0 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TGATTTTTTAGGTGGGCCGCAGCCGT................................... 26 0 3 0.67 2 0 0 0 0 0 0 2 0 0 0 0 0 0
............................................................................................................................GGCCAGCAATCAGAAGATTGCG.......................................................................................................................................................................... 22 0 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCCAGCAATCAGAAGATTGCG.......................................................................................................................................................................... 21 0 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................TTTTAGGTGGGCCGCAGCCGTTTTC............................... 25 0 3 0.67 2 0 1 1 0 0 0 0 0 0 0 0 0 0
......TGTGCAACTCTCTGTTCGGCACCAAC............................................................................................................................................................................................................................................................................................ 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....GTGTGCAACTCTCTGTTCGGC.................................................................................................................................................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CTCGCCAACACGCCTCTCTTAACGGC............................................................................................................................................................................................. 26 0 4 0.50 2 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTAACGGCCAGCAATCAGAAG................................................................................................................................................................................ 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CACGCCTCTCTTAACGGCCAGCAATCAGA.................................................................................................................................................................................. 29 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................CAGACTCCAACTGCCGACAGCAACACACC...................................................................................................................................................................................................................... 29 0 4 0.50 2 1 0 0 1 0 0 0 0 0 0 0 0 0
...............CTCTGTTCGGCACCAACTTC......................................................................................................................................................................................................................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................CTCTTAACGGCCAGCAATCAGAAGAT.............................................................................................................................................................................. 26 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................GCTTGCATTTGGGACAGCTCT................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TTGCATTTGGGACAG....................................................................... 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.GAAAGTGTGCAACTCTCTGTTCGGCA................................................................................................................................................................................................................................................................................................. 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................CGCCTCTCTTAACGGCCAGCAATCAGAAGA............................................................................................................................................................................... 30 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTAACGGCCAGCAATCAGAAGAT.............................................................................................................................................................................. 23 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0
....................TTCGGCACCAACTTCGCCTACGGCGA.............................................................................................................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TTCAACCACGACTAATCTTGAACTGCA....... 27 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................ACGAGTAATCTTGAACTGCA....... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TCTCTTAACGGCCAGCAATCAGA.................................................................................................................................................................................. 23 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................TTTTCAACCACGAGTAATCTTGAACTGCA....... 29 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TAGCTTGCATTTGGGACA........................................................................ 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AATTTAGCTTGCATTTGGGACAGC...................................................................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTAGCTTGCATTTGGGACAGCTC.................................................................... 23 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................CGAGTAATCTTGAACTGCATTATC.. 24 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTAACGGCCAGCAATCAGAAGA............................................................................................................................................................................... 22 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................TCTGTTCGGCACCAACTTCGCCTACGGCGA.............................................................................................................................................................................................................................................................................. 30 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
TGAAAGTGTGCAACTCTCTGTTCGGC.................................................................................................................................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............TCTCTGTTCGGCACCAACTTCG........................................................................................................................................................................................................................................................................................ 22 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TGCATTTGGGACAGCTCT................................................................... 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTAACGGCCAGCAATCAGAAGATCGC........................................................................................................................................................................... 26 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TCAACCACGACTAATCTTGAACTGCC....... 26 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CTCTCTTAACGGCCAGCAATCAGAAGA............................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTAACGGCCAGCAATCAGAAGATTG............................................................................................................................................................................ 25 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TTCAACCACGAGTAATCTTGAACTG......... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CCTCTCTTAACGGCCAGCAATCAGA.................................................................................................................................................................................. 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................GCCTCTCTTAACGGCCAGCAATCAGA.................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......GTGCAACTCTCTGTTCGGCTT................................................................................................................................................................................................................................................................................................ 21 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........CAACTCTCTGTTCGGCACCAACTTCA........................................................................................................................................................................................................................................................................................ 26 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................TGTTCGGCACCAACTTCGCCT..................................................................................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........TGCAACTCTCTGTTCGGCACCAACTTCGCC...................................................................................................................................................................................................................................................................................... 30 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TTTTTTAGGTGGGCCGCAGC...................................... 20 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AATCAGAAGATTGCGACCCTGA................................................................................................................................................................... 22 1 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................TTTCAACCACGAGTAATCTTGAA............ 23 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TTTTTAGGTGGGCCGCAGCCGTTT................................. 24 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................GATTTTTTAGGTGGGCCG.......................................... 18 0 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0
......TGTGCAACTCTCTGTTCGGCTTT............................................................................................................................................................................................................................................................................................... 23 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TTTTTAGGTGGGCCGCAGCCGTT.................................. 23 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CAGAAGATTGCGACCCTGA................................................................................................................................................................... 19 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................TAACGGCCAGCAATCAGAAGATT............................................................................................................................................................................. 23 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................ATCAGAAGATTGCGACCCTGA................................................................................................................................................................... 21 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................TAACGGCCAGCAATCAGAAGATTGCG.......................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TAACGGCCAGCAATCAGAAGATTGC........................................................................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................TTTTCAACCACGACTAATCTTGAAC........... 25 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TAACGGCCAGCAATCAGAAGAT.............................................................................................................................................................................. 22 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................ATGATTTTTTAGGTGGGC............................................ 18 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................CCGTTTTCAACCACGAGTAATCTTGA............. 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................CGTTTTCAACCACGAGTAATCTTG.............. 24 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TTCAACCACGAGTAATC................. 17 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TTAGGTGGGCCGCAGCCGTTTTCAAC............................ 26 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................GTTTTCAACCACGAGTAATCT................ 21 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TTTTTAGGTGGGCCGCAGCCGTTTTC............................... 26 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................CAGCAATCAGAAGATTGCGACCCTGA................................................................................................................................................................... 26 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TGGGCCGCAGCCGTTTTCAACCAC......................... 24 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................AGCCGTTTTCAACCACGAC...................... 19 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................TTTTCAACCACGAGTAATCTTGAAC........... 25 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................TTTTTTAGGTGGGCCG.......................................... 16 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CCAGCAATCAGAAGATTGC........................................................................................................................................................................... 19 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................CGTTTTCAACCACGACTAATCTTGAAC........... 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................CGTCATCGTGAACTGCAGGA.... 20 3 14 0.29 4 0 0 0 0 0 0 0 0 0 3 1 0 0
.........................................AGCGACACCACTTAAGA.................................................................................................................................................................................................................................................................. 17 2 7 0.29 2 0 0 0 0 0 0 0 0 2 0 0 0 0
........................................................................GCAGACTCCAACTGCCGACAGCAACAC......................................................................................................................................................................................................................... 27 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................AACACACCTCGCCAACACGCCTCTCT.................................................................................................................................................................................................... 26 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................CAGACTCCAACTGCCGACAGCAACAC......................................................................................................................................................................................................................... 26 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................CAGACTCCAACTGCCGACAGCAACACA........................................................................................................................................................................................................................ 27 0 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................ATGATTTTTTAGGTGGGCCGTTT....................................... 23 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................TCATCGTGAACTGCAGGACT.. 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................CTCTTAACGGCCAGCAAT...................................................................................................................................................................................... 18 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................CAGACTCCAACTGCCGACAGCAACACACCT..................................................................................................................................................................................................................... 30 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................GACTCCAACTGCCGACAGCAACACACCT..................................................................................................................................................................................................................... 28 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................CACCGCTTACGACAACAACTGC........................................................................................................................................................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................CGCAGACTCCAACTGCCGACAGCAACA.......................................................................................................................................................................................................................... 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CAGACTCCAACTGCCGACAGC.............................................................................................................................................................................................................................. 21 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CAACACGCCTCTCTTAACGGC............................................................................................................................................................................................. 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CTCCAACTGCCGACAGCAACACACCT..................................................................................................................................................................................................................... 26 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................TCCAACTGCCGACAGCAACACACCTCGC.................................................................................................................................................................................................................. 28 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................TCCAACTGCCGACAGCAACACAA....................................................................................................................................................................................................................... 23 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................ACACACCTCGCCAACACGCCT........................................................................................................................................................................................................ 21 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CCGACAGCAACACACCTCGCCAACACGCC......................................................................................................................................................................................................... 29 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................CAACACACCTCGCCAACACGC.......................................................................................................................................................................................................... 21 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................AGCAACACACCTCGCCAACACGCC......................................................................................................................................................................................................... 24 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................ACTCCAACTGCCGACAGCAACACAC....................................................................................................................................................................................................................... 25 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................CGACAGCAACACACCTCGCCAACACGCC......................................................................................................................................................................................................... 28 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................TGCCGACAGCAACACACCTCGCCAA............................................................................................................................................................................................................... 25 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................GACAGCAACACACCTCGCCAA............................................................................................................................................................................................................... 21 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................TGCCGACAGCAACACACCTCGCCAACA............................................................................................................................................................................................................. 27 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTCCTTCTCTGTGATGCAGA........................................................................................................................ 20 3 13 0.15 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CCGTATTCAACCACG........................ 15 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCAGAAGATTGCGAG........................................................................................................................................................................ 15 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...ATGTGTACAACTCTCTGT....................................................................................................................................................................................................................................................................................................... 18 2 14 0.14 2 0 0 0 0 0 0 0 0 0 0 2 0 0
...................................................................................................................................................................................................................................................................................................GCGTCATCGTGAACTGCAGGA.... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...............CTCTATTCGGCACCA.............................................................................................................................................................................................................................................................................................. 15 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................CGGACGGTTTCAACCACGA....................... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................ACTTCGTCTACGGCG............................................................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................CGTGAGTCGCAGCCGTTTT................................ 19 3 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
..............TCTCTAGTCGGCACCA.............................................................................................................................................................................................................................................................................................. 16 2 20 0.10 2 1 0 1 0 0 0 0 0 0 0 0 0 0
............ACCCTCTAGTCGGCACCA.............................................................................................................................................................................................................................................................................................. 18 3 20 0.10 2 0 0 0 0 0 0 1 0 0 0 0 1 0
..........CAAGTCCCTGTTCGGCGCCA.............................................................................................................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................GCCCTGTCGTCGAATGC......................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................TCATCGTGAACTGCAGG..... 17 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........AACCCTCTAGTCGGCACCA.............................................................................................................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................ATTCCTTGTCTGTTAAG............................................................................................................................ 17 2 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................TTCGACCCGGTCGTCA.............................................................................................................................................................. 16 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TCTTGAACTGCATGGTT.. 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................GTCATCGTGAACTGCAG...... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACTTTCACACGTTGAGAGACAAGCCGTGGTTGAAGCGGATGCCGCTGTGGCGAATTCTGTGGTTGAGGTTGGCGTCTGAGGTTGACGGCTGTCGTTGTGTGGAGCGGTTGTGCGGAGAGAATTGCCGGTCGTTAGTCTTCTAACGCTGGGACAGCAGTTTACGCGTCGAAATTCTTAAGGAAAAGACACTTCCTCTTCTCCGTATAATTTGTTCTTAAAAGGTTAAAACGAACGTAAACCCTGTCGAGGATGGGTACTAAAAAATCCACCCGGCGTCGGCAAAAGTTGGTGCTCATTAGAACTTGACGTCCTAATA
***************************************************************************************************************************************((.....(((((..((((((....))))))......))))).................))......******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M024
male body		 M053
female body
 GSM343915
embryo
......................................................................................................................GAATTGCCGGTCGTTAGTCTT................................................................................................................................................................................. 21 0 2 7.00 14 8 0 0 2 4 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AGTTGGTGCTCATTAGAACTTGACGT....... 26 0 2 6.50 13 10 0 1 2 0 0 0 0 0 0 0 0
...................................................................................................................AGAGAATTGCCGGTCGTTAGT.................................................................................................................................................................................... 21 0 2 5.00 10 2 0 0 3 0 0 5 0 0 0 0 0
...................................................................................................................AGAGAATTGCCGGTCGTTAGTCTTCT............................................................................................................................................................................... 26 0 2 3.50 7 0 0 1 6 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................CGGCAAAAGTTGGTGCTCATTAGAACT............. 27 0 3 3.00 9 4 0 0 2 1 1 0 1 0 0 0 0
..........................................................................TCTGAGCTTGACGGCT.................................................................................................................................................................................................................................. 16 1 4 2.75 11 0 0 0 0 0 11 0 0 0 0 0 0
......................................................................................................................................................................CGAAATTCTTAAGGAAAAGACACTT............................................................................................................................. 25 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
..........................................................................................................................TGCCGGTCGTTAGTCTTCTAA............................................................................................................................................................................. 21 0 3 1.67 5 0 4 1 0 0 0 0 0 0 0 0 0
........................................................................................................................ATTGCCGGTCGTTAGTCTTCT............................................................................................................................................................................... 21 0 3 1.67 5 0 4 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TTGGTGCTCATTAGAACTTGACGT....... 24 0 2 1.50 3 1 0 0 1 0 1 0 0 0 0 0 0
.........................................................................................................................TTGCCGGTCGTTAGTCTTCTA.............................................................................................................................................................................. 21 0 3 1.33 4 0 3 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................GTCGGCAAAAGTTGGTGCTCA..................... 21 0 3 1.33 4 0 1 0 1 2 0 0 0 0 0 0 0
.................................................................................................................GGAGAGAATTGCCGGTCGTTA...................................................................................................................................................................................... 21 0 4 1.25 5 2 0 2 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AACGAACGTAAACCCTGTCGAGGATGGGT............................................................. 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................TTGGTTGAGGTTGGCGTCTGAGGT.......................................................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TACGCGTCGAAATTCTTAAGGA....................................................................................................................................... 22 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AGCAGTTTACGCGTCGAAATTC.............................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................TGTCGAGGATGGGTAATAA........................................................ 19 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................CCTGTCGAGGATGGGTACTAAAAAAT................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTGTTCTTAAAAGGTTAAAACGA..................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................AGGATGGGTACTAAAAAATCCACCCGGCGT........................................ 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................TGTCGAGGATGGGTACTAAAAAAT................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................CTGTCGAGGATGGGTACTAAAAAATC.................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTACGCGTCGAAATTCTTAAGGAAA..................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ACGCTGGGACAGCAGTTTACGCGTCGAAATT............................................................................................................................................... 31 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......CACGTTGAGAGACAAGCCGTGGT.............................................................................................................................................................................................................................................................................................. 23 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0
.......................................................................................................................AATTGCCGGTCGTTAGTCTTC................................................................................................................................................................................ 21 0 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0
..............................................................................................................................................ACGCTGGGACAGCAGTTTACGCGTCGAAAT................................................................................................................................................ 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AGTTTACGCGTCGAAATTCTTAAGGAA...................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................CGGCAAAAGTTGGTGCTCATTAGAACTT............ 28 0 3 1.00 3 1 0 0 1 0 1 0 0 0 0 0 0
...................................................................................................................AGAGAATTGCCGGTCGTTAGTCTT................................................................................................................................................................................. 24 0 2 1.00 2 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................AGCGGTTGTGCGGAGAGAATT................................................................................................................................................................................................. 21 0 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CTGAGGTTGACGGCTGTCGTT............................................................................................................................................................................................................................ 21 0 4 0.75 3 2 0 0 1 0 0 0 0 0 0 0 0
.........................................................................GTCTGAGCTTGACGGCT.................................................................................................................................................................................................................................. 17 1 4 0.75 3 0 0 0 0 0 3 0 0 0 0 0 0
...........................................................................CTGAGCTTGACGGCT.................................................................................................................................................................................................................................. 15 1 11 0.73 8 0 0 0 0 0 8 0 0 0 0 0 0
........................................................................................................................TTTGCCGGTCGTTAGTCTTCTA.............................................................................................................................................................................. 22 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
....................................................................................ACGGCTGTCGTTGTGTGGAGC................................................................................................................................................................................................................... 21 0 6 0.67 4 2 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................GCCGGTCGTTAGTCTTCTA.............................................................................................................................................................................. 19 0 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................CCACCCGGCGTCGGCAAAAGTTGGTGCT....................... 28 0 3 0.67 2 0 0 0 0 2 0 0 0 0 0 0 0
........................................................................................................................TTTTCCGGTCGTTAGTCTTCTA.............................................................................................................................................................................. 22 2 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TTTGCCGGTCGTTAGTCTTCT............................................................................................................................................................................... 21 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTGCCGGTCGTTAGTCTTCTAA............................................................................................................................................................................. 22 0 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................TGACGGCTGTCGTTGTGTGGAGCGGT................................................................................................................................................................................................................ 26 0 6 0.67 4 3 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................TTGCCGGTCGTTAGTCTTCT............................................................................................................................................................................... 20 0 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
...............................................................................GGTTGACGGCTGTCGTTGTGT........................................................................................................................................................................................................................ 21 0 5 0.60 3 0 2 1 0 0 0 0 0 0 0 0 0
.............................................................................GAGGTTGACGGCTGTCGTTGT.......................................................................................................................................................................................................................... 21 0 5 0.60 3 2 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................GAGAGAATTGCCGGTCGTTAG..................................................................................................................................................................................... 21 0 4 0.50 2 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................AGAATTGCCGGTCGTTAGTCTT................................................................................................................................................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................AAAAGTTGGTGCTCATTAGAACTTGA.......... 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................ATGTGGCGAATTCTGTGGTTGAGGT....................................................................................................................................................................................................................................................... 25 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ACGTAAACCCTGTCGAGAAT................................................................. 20 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................AAGAATTGCCGGTCGTTAGTCT.................................................................................................................................................................................. 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................ATGCCGCTGTGGCGAATTCTGTGAT............................................................................................................................................................................................................................................................. 25 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................TGGTTGAAGCGGATGCCGCTGT............................................................................................................................................................................................................................................................................ 22 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AATTGCCGGTCGTTAGTCTT................................................................................................................................................................................. 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TTGGTGCTCATTAGAACTTGA.......... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................GGTGCTCATTAGAACTTGACG........ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................ATGGTGCTCATTAGAACTTGAC......... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................CGGATGCCGCTGTGGCGA....................................................................................................................................................................................................................................................................... 18 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................GTGGTTGAAGCGGATGCCGCT.............................................................................................................................................................................................................................................................................. 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................CTGTGGCGAATTCTGTGGTTGAGGT....................................................................................................................................................................................................................................................... 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................GAGAATTGCCGGTCGTTAGT.................................................................................................................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................TTACGCGTCGAAATTCTTAAGGAA...................................................................................................................................... 24 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................AGAATTGCCGGTCGTTAGTCT.................................................................................................................................................................................. 21 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................GGTGCTCATTAGAACTTGACGT....... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GAATTGCCGGTCGTTAGTCT.................................................................................................................................................................................. 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GAATTGCCGGTCGTTAGTCTTC................................................................................................................................................................................ 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GACGGCTGTCGTTGTGTGGAGCGGT................................................................................................................................................................................................................ 25 0 6 0.50 3 0 1 0 1 1 0 0 0 0 0 0 0
................................................................................................................CGGAGAGAATTGCCGGTCGTTAGTCTT................................................................................................................................................................................. 27 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................GTGGCGAATTCTGTGGTTGAGGTT...................................................................................................................................................................................................................................................... 24 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................TACGCGTCGAAATTCTTAAGGAA...................................................................................................................................... 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CGAACGTAAACCCTGTCGAGAAT................................................................. 23 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................GCGGAGAGAATTGCCGGTCGTTAGT.................................................................................................................................................................................... 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ACGTAAACCCTGTCGAGAATG................................................................ 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................CGGAGAGAATTGCCGGTCGTTAGTCT.................................................................................................................................................................................. 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................TTGAATTGCCGGTCGTTAGTCTT................................................................................................................................................................................. 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................TTGACGGCTGTCGTTGTGTGGA..................................................................................................................................................................................................................... 22 0 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................TTGACGGCTGTCGTTGTGTGG...................................................................................................................................................................................................................... 21 0 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................AGGTTGACGGCTGTCGTTGTGT........................................................................................................................................................................................................................ 22 0 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................GTGGAGCGGTTGTGCGGAGAG..................................................................................................................................................................................................... 21 0 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0 0
.................................................................................ATGACGGCTGTCGTTGTGTGGAGCGGT................................................................................................................................................................................................................ 27 1 5 0.40 2 0 0 0 0 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................CGGCGTCGGCAAAAGTTGGTG......................... 21 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................CAAAAGTTGGTGCTCATTAGAA............... 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CCGGCGTCGGCAAAAGTTGGT.......................... 21 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AGTTGGTGCTCATTAGAACTT............ 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GCCGGTCGTTAGTCTTCT............................................................................................................................................................................... 18 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................GCGTCGGCAAAAGTTGGTGCTCATT................... 25 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................CGGCAAAAGTTGGTGCTCATTAG................. 23 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGCCGGTCGTTAGTCTTCT............................................................................................................................................................................... 19 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................CGAGGATGGGCACTA......................................................... 15 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................GGCAAAAGTTGGTGCTCATTAGAACTT............ 27 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................AAAAGTTGGTGCTCATTAGAA............... 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TCGGCAAAAGTTGGTGCTCAT.................... 21 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................AGTTGGTGCTCATTAGAACTTG........... 22 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................GCTGTCGTTGTGTGGAGCGGT................................................................................................................................................................................................................ 21 0 6 0.33 2 0 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................CGGCAAAAGTTGGTGCTCATTAGAACG............. 27 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................CGGCGTCGGCAAAAGTTGGTGCTCAT.................... 26 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTGCCGGTCGTTAGTCTTC................................................................................................................................................................................ 19 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................GGCAAAAGTTGGTGCTCATAA.................. 21 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................AGTCGGCAAAAGTTGGTGCTCATT................... 24 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................CGGCGTCGGCAAAAGTTG............................ 18 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TGTCGGCAAAAGTTGGTGCTCA..................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ATTGCCGGTCGTTAGTCTTC................................................................................................................................................................................ 20 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CGTCGGCAAAAGTTGGTGCTCATT................... 24 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................CGGCAAAAGTTGGTGCTCATT................... 21 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CGTCGGCAAAAGTTGGTGCTCA..................... 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................CACCCGGCGTCGGCAAAAGTTGGT.......................... 24 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................ATGGTGCTCATTAGAACT............. 18 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................TTTGCCGGTCGTTAGTCTTCTAA............................................................................................................................................................................. 23 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................AAGTTGGTGCTCATTAGAACTTG........... 23 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................GCAAAAGTTGGTGCTCATTAGAACTT............ 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................GCGGAGAGAATTGCCGGTCGT........................................................................................................................................................................................ 21 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................GTGGAGCGGTTGTGCGGAGAGAAT.................................................................................................................................................................................................. 24 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................CGTCAGAGCTTGACGGCTG................................................................................................................................................................................................................................. 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................GGAGCGGTTGTGCGGAGAGA.................................................................................................................................................................................................... 20 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................GGAGCAGTTGTGAGGATAGAAT.................................................................................................................................................................................................. 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................GGAGCGGTTGTGCGGAGAGAAT.................................................................................................................................................................................................. 22 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................GTCTGAGCTTGACGGCTG................................................................................................................................................................................................................................. 18 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GAGAGAATTGCCGGTCGTTA...................................................................................................................................................................................... 20 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................TTGTGCGGAGAGAATTGCCGGT........................................................................................................................................................................................... 22 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................CGGAGAGAATTGCCGGTCGTT....................................................................................................................................................................................... 21 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................GCGGTTGTGCGGAGAGAATTG................................................................................................................................................................................................ 21 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................GCGGTTGTGCGGAGAGAATTGC............................................................................................................................................................................................... 22 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................GCGTCTGAGGTTGACGGCTGTCGT............................................................................................................................................................................................................................. 24 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................AAAGCGGTTGTGCGGAGAGAATT................................................................................................................................................................................................. 23 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TGCTCATTAGAACTT............ 15 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TCTGAGGTTGACGGCT.................................................................................................................................................................................................................................. 16 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................GTGCGGAGAGAATTGCCGGTCG......................................................................................................................................................................................... 22 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................GTCTGAGCTTGACTGCT.................................................................................................................................................................................................................................. 17 2 13 0.23 3 0 0 0 0 0 3 0 0 0 0 0 0
.....................................................................................................GAGCGGTCGTGCGGAGAG..................................................................................................................................................................................................... 18 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................CGTCTAAGCTTGACGGCTG................................................................................................................................................................................................................................. 19 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TTGACGGCTGTCGTTGTGTGGAGCGGT................................................................................................................................................................................................................ 27 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................TGAGGTTGACGGCTTTCGT............................................................................................................................................................................................................................. 19 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................GTGGAGCGGTTGTGCGGAGA...................................................................................................................................................................................................... 20 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................TGTGTGGAGCGGTTGTGCGGA........................................................................................................................................................................................................ 21 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................ACTGAGGTTGACGGCT.................................................................................................................................................................................................................................. 16 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GGTTGACGGCTGTCGTTG........................................................................................................................................................................................................................... 18 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTGACGGCTGTCGTTGTGTG....................................................................................................................................................................................................................... 20 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................GTTGTGTGGAGCGGTTGTGC........................................................................................................................................................................................................... 20 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................GGTTGACGGCTGTCGTTGTG......................................................................................................................................................................................................................... 20 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................GAGGTTGACGGCTGTCGTTG........................................................................................................................................................................................................................... 20 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................CCGTCTGAGCTTGACGGCT.................................................................................................................................................................................................................................. 19 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................TTGTGTGGAGCGGTTGTGC........................................................................................................................................................................................................... 19 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................GAGGTTGACGGCTGTCGTTGTCT........................................................................................................................................................................................................................ 23 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TGTTGACGGCTGTCGTTGTG......................................................................................................................................................................................................................... 20 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................GTGTGGAGCGGTTGTGCGGAG....................................................................................................................................................................................................... 21 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................TGAGGTTGACGGCTGTCGTT............................................................................................................................................................................................................................ 20 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GAGGTTGACGGCTGTCGTTGTGT........................................................................................................................................................................................................................ 23 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................GTTGACGGCTGTCGTTGTGTG....................................................................................................................................................................................................................... 21 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................AGGTTGACGGCTGTCGTTG........................................................................................................................................................................................................................... 19 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................TTGGAGCGGTTGTGCGGAGA...................................................................................................................................................................................................... 20 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................GTGGAGCGGTTGTGCGGAG....................................................................................................................................................................................................... 19 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................CGTCAGAGCTTGACAGCTG................................................................................................................................................................................................................................. 19 3 11 0.18 2 0 0 0 0 0 0 0 0 0 2 0 0
...................................................................................GACGGCTGTCGTTGTGTGGA..................................................................................................................................................................................................................... 20 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................ATGCCGGTCGTTAGTC................................................................................................................................................................................... 16 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................GACGGCTGTCGTTGTGTGGAG.................................................................................................................................................................................................................... 21 0 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................TTTGTGTGGAGCGGTTGTGC........................................................................................................................................................................................................... 20 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................TCGGCTGTCGTTGTGTGGAGC................................................................................................................................................................................................................... 21 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................CGGCTGTCGTTGTGTGGAGC................................................................................................................................................................................................................... 20 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................CGGCTGTCGTTGTGTGGAGCGG................................................................................................................................................................................................................. 22 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................GTCGTTGTGTGGAGCGGTTGT............................................................................................................................................................................................................. 21 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................TTTGAGCGGTTGTGCGGAGAG..................................................................................................................................................................................................... 21 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................TTTCGGCTGTCGTTGTGTGGAGC................................................................................................................................................................................................................... 23 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................CGGCTGTCGTTGTGTGGAGCG.................................................................................................................................................................................................................. 21 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................GGCTGTCGTTGTGTGGAG.................................................................................................................................................................................................................... 18 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................TCTGAGCTTGACTGCTGTAG.............................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................TCTGAGCTTGAGGGCTGTAG.............................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................TCTGAGTTTGACGGCT.................................................................................................................................................................................................................................. 16 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................TTGGTTGACGGCTGTCGTTGT.......................................................................................................................................................................................................................... 21 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................CGTCTGAGCTTGACTGCT.................................................................................................................................................................................................................................. 18 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................CGTCTTAGCTTGACGGCT.................................................................................................................................................................................................................................. 18 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................GGAGTTTACGCGTCGA................................................................................................................................................... 16 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................GTGAGGCGGTTGTGCGG......................................................................................................................................................................................................... 17 2 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0
..........................TATTGGAAGCGGATGCCG................................................................................................................................................................................................................................................................................ 18 3 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0
................................................................................TTTGACGGCTGTCGTTTTGT........................................................................................................................................................................................................................ 20 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................TCTGAGCTTGATGGCT.................................................................................................................................................................................................................................. 16 2 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0
..........................................................................TCTGAGCTTGACGGC................................................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................GTCTTAGCTTGACGGCTGTT............................................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................TCTGAGTTTGAGGGCTGTA............................................................................................................................................................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................CGTCCAAGCTTGACGGCTG................................................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................TCTGAGCTTGAGGGCTG................................................................................................................................................................................................................................. 17 2 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
............................TTGGAAGCGGATGCCG................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................AAGGAAAAGAGACTT............................................................................................................................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................CGTTAATCATGTAACGCTG........................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................TAACGCTGTGACAGTAGTC............................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................TCAGAGCTTGACGGCTGG................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................AACGCTGTGACAGTAGT.............................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................CTGAGCTTGAGGGCTGTAG.............................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................CCCTCTGAGCTTGACGGCT.................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:20178805-20179120 - dsi_11674 TGAAAGTGTGCAACTCTCTGTTCGGCACCAACTTCGCCTACGGCGACAC---CGCTTAAGACACCAACTCCAACCGCAGACTCCAACTGCCGACAGCAA-------------CACACCTCGCCAACACGCCTCTCTTAACGGCCAGCAATCAGA----AGATTGCGACCCTGTCGTCAAATGCGCAGCTT---TAAGAAT--------TCCTTTTCTGTGAAGGAGAAGAGG----------------CATATTAAACAA---GAATTTTCCAATTTT---------GCTTGCATTTGGGACAGCTCCTACCCATGATTT-TTTAGG---------------------TGGGCCGCAGCCGTTTTCAACCACGAGTAATCTT------GAACTGCAG----------GATTAT
droSec2 scaffold_178:8062-8371 - TGAAAGTGTGCAACTCTCTGTTTGGCACCAACTTCGCCTACGACGACAC---CGCTAAAGACACCAACTCCAACCGCAGACTCCAACTGCCGACAGCAA-------------CACACCTCGCCAACACGCCTCTCTTAACGGCCAGCAATCAGA----AGATTGCGTCCCTGACTTCAAATGCGCAACTC---AAAGAAT--------TCCTTCTCGGTGA------AGAGG----------------CATATTAAACAA---GAATTTTCCAATTTA---------GCTTGCATTTGGGACAGCTCCTACCCATGATTT-TTTAGG---------------------TGGGCCGCAGCCGTTTTAAACCACGAGTAATCTT------GAACTGCAA----------GATTAT
dm3 chrX:21496073-21496349 - G---------CGACACCACTTAAGACACCAACTCCAACCGCAG------------------------------------ACTCCAACTGCCGACGACA-------------ACACAC-------CTATGCCTCTCTTAACGGACAGCAATCAGA----AGATTGCGACCCTGACGTCAATGGCGCAACTT---TAAGAAT--------TCCTTTTCTGTCAAAGTGAAGAGG----------------CATATTAAACAA---GAATTTCCCAATTTA---------GTTTGTATTTGGGACAGCTCTTACTTATGATTT-TTTAGG---------------------TGGGCCGGAGCCGTTTTCAACAACGAATAATTTT------GAACTGCAAGAGCCGATAAGATTAT
droEre2 scaffold_4690:17960210-17960539 - TAGAGGTGTGCAACTCTCTGTTTGGCACCAACTTCACCTGCAGCGACAC---ATCTTAAGAGACCAATAC---------------------------AGTACTGC---AATACACAC-------CGATGCCTCTCTTAACGGCCAGCGATCCGA----GGATTGTGACCCTGACGTCAAATGCGCAACTTTGTTAAGAAGATGAAAGATTTTTGTCTGTGAAGATGAAAAGG----------------CATATTAAACAATAGGTATTTTCCATTTTA---------GTTTGCATTTTGCTCAGCTCTTACTTATGATTTCCTTAGG---TAGCATTAGTACATACGG-GGGTCACAGCCCTTTTCAATC-TAAAAAATCTTAAAAATGAACTATGA---------AGGTTAT
droYak3 X:20619924-20620244 - TGGAAGTGTGCAACTCTCTGTTCGGCACCAACTTCACCTACAGCGACAC---AGCTTAAGACACCAACTGTA--------------------------G---TACACACACACACAC-------GAATGCCTCCCTTAACGGCCAGCAATCCGA----AGATTGTGACCCTGACGTCAAATGCGCAACTTTGTTAAGAAT--------TCCTTTTTTGTGAAGATGAAGAGG----------------CATATTAAACAATAGGTATTTTCCATTATA---------GTTTGCATTTGGGTCAGATCTTACTTGCGAATTCCTTAGGCATTAGCTTAAGTATATGCAGTGGGTCACAGCCTTTTTCAACCAGTGGTAAACTA------AAACTGTAA----------GAGTCT
droEug1 scf7180000405539:935-995 - TGAAAGTGTGCAACACTTTGTTCGGAACAAACTTCACGTATAGTGACATTTCATCTTAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302421:81409-81622 - TTGAAGTGTGCAACACTCTCTTCGGAACAAACTTCTCGTACGGCGACACTTCATCTTAAGACATCGATAG--------------------------------------AAAGCACAC-------CTATGCCCCACTTAGCGGCCCCATCTCCAA----AAACGTTGGCCGTAAAGTCAAACGCGCAACTGTTCTTAGAAT--------TACT-----ATGA---AGAAATTG----------------GTTGCCGAACAATGAGTATTTTACATTTTT---------TTTACCGTTTCGGTCAG-------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415769:385986-386198 + TTGAAGTGTGCAACACTCTGTTCGGCACAAACTTCTCGTACAGCGACACCTCTTCTTAAGACATTTAT----------------------------------------------CAC-------CTATGCCCCGCTTAACGGCCTCATTTCCAAAAAAAAACTTGAGCCGTAAAGTCCAGTGCGCAACTAT-----------------TTCTTGACTATAAAACAGAA--CGGCTACCAAATGATGCACATATTATACT----------------TCCTTTAATTATATTTGCATTTGGAA----------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491087:962373-962445 + TGGAAGTGTGCAACACTCTGTTCGGAACGAACTTTGCGTTTGGCGACACTTCATCTTAAGGCATTTATTTCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777745:59435-59596 + TGGAAGTGTGCAACACTCTTTTCGGAACGAACTTTGCGTTAAGTGACACTTAAGCTTAAGACATTTTT----------------------------------------AAAACGCAC-------CCATACCATGCTTAACGGCAACATCTCTAA----ACACTGCGGCCGTAAAGTCAAATGCGCAAAAATTTATAGAAC--------TTATTCTATACGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453926:446356-446414 - TAGAAGTGTGCAACACTCTGTTCGGAACGAACTTCGCCTATGGCGACAC---AGCTTAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302798:88710-88769 - TTAGTGTTTGCAACACGCTGTTTGGCACCAACTTTTCGTTCGAAAACCCTACAGCTTAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_10074:6921-7000 + GCATTTGGCGTTG--CTCCTCCGGCTGCCATCTCTGCCCGCACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCTTGAAGCTGTGTTACTATT------AGACTCTAA----------AGCAAT
droBip1 scf7180000396696:168998-169123 + TTAATGTGTGCAATACATTGTTTGGCACCAACTTCACCTACGAGAACAC---CGCTTAAAGAACCCAA--------------GGAACAAGGATTAACAA-------------CTCTGCTAGCAACTATACCCTTCTTAACGGCCTATGGTCATA----GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1a:1175759-1175804 + TGAATGTTTGCAACACATTGTTCGGCACCAATTTCACATATGAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_19:472131-472167 - CGAATGCTTGCAACATATTGTTCGGAACCAATTTCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:5869798-5869840 - TAAATGTTTGCAACACGTTGTTTGGCACCAAATTCGACGGCG---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:2596431-2596476 - TCAATGTTTGCAACAGTTTGTTTAACACCAATTTCATATATGAGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:16760633-16760678 - TCAATGTATGCAACACATTGTTCAACACAAATTTCATATATGAGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15081:1182790-1182831 + TAAGTGTTTGCAACACTTTGTTCAACACAAACTTTGTCTACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGAAAGTGTGCAACTCTCTGTTCGGCACCAACTTCGCCTACGGCGACAC---CGCTTAAGACACCAACTCCAACCGCAGACTCCAACTGCCGACAGCAA-------------CACACCTCGCCAACACGCCTCTCTTAACGGCCAGCAATCAGA----AGATTGCGACCCTGTCGTCAAATGCGCAGCTT---TAAGAAT--------TCCTTTTCTGTGAAGGAGAAGAGG----------------CATATTAAACAA---GAATTTTCCAATTTT---------GCTTGCATTTGGGACAGCTCCTACCCATGATTT-TTTAGG---------------------TGGGCCGCAGCCGTTTTCAACCACGAGTAATCTT------GAACTGCAG----------GATTATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................TCAACCACGAGTAATCTT------GAACTGCA.................2625.001000030030001030000
...........................................................................................................................................................................................................................................................................................................................................................................TTCAACCACGAGTAATCTT------GAACTGCA.................2724.00800010033000010000
............................................................................................................................................................................................................................................................................................................................................................................TCAACCACGAGTAATCTT------GAACTGC..................2523.00600000033000000000
...................................................................................................................................TCTCTTAACGGCCAGCAATCAGA----AGAT...........................................................................................................................................................................................................................................................2722.50500010001010020000
...............................................................................................................................CGCCTCTCTTAACGGCCAGCAATCAGA----...............................................................................................................................................................................................................................................................2722.50500000030110000000
.....................................................................................................................................TCTTAACGGCCAGCAATCAGA----AG.............................................................................................................................................................................................................................................................2322.50500005000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTCAACCACGAGTAATCTT------GAACTGC..................2622.50500000023000000000
.......................................................................................................................................TTAACGGCCAGCAATCAGA----AGATTGCG.......................................................................................................................................................................................................................................................2722.50500000001003010000
............................................................................................................................................GGCCAGCAATCAGA----AGATTGCGA......................................................................................................................................................................................................................................................2312.00200000000002000000
...................................................................................................................................................AATCAGA----AGATTGCGACCCTG.................................................................................................................................................................................................................................................2112.00200000000000002000
..........................................................................................................................................................................................................................................................................................................................................................................TTTCAACCACGAGTAATCTT------GAACTGC..................2722.00400000013000000000
.......................................................................................................................................TTAACGGCCAGCAATCAGA----AGATTGCGA......................................................................................................................................................................................................................................................2812.00200000020000000000
............................................................................................................................................................................................................................................................................................................................................................................TCAACCACGAGTAATCTT------GAAC.....................2231.67500005000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AACCACGAGTAATCTT------GA.......................1831.67500005000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TTTCAACCACGAGTAATCTT------GAACTGCA.................2821.50300010001000010000
....................................................................................................................................................................................TGCGCAGCTT---TAAGAAT--------TCCT.........................................................................................................................................................................................................2121.50300003000000000000
......TGTGCAACTCTCTGTTCGGCA..................................................................................................................................................................................................................................................................................................................................................................................................2121.50300000011000001000
...................................................................................................................................TCTCTTAACGGCCAGCAATCAGA----AGA............................................................................................................................................................................................................................................................2621.50300000002000010000
.......................................................................................................................................TTAACGGCCAGCAATCAGA----AGATTGC........................................................................................................................................................................................................................................................2621.50300000000003000000
..........................................................................................................................................................................................................................................................................................................................TGATTT-TTTAGG---------------------TGGGCCGCAG.......................................................2231.33400004000000000000
..........................................................................................................................................................................................................................................................................................................................TGATTT-TTTAGG---------------------TGGGCCGCA........................................................2131.33400004000000000000
.................................................................................................................................................................................................................................................................................................TTGCATTTGGGACAGC............................................................................................................1611.00100000000001000000
.........................................................................................................................................AACGGCCAGCAATCAGA----AGATTGCGAC.....................................................................................................................................................................................................................................................2711.00100000000001000000
................................................................................................................................................................................................................TCCTTTTCTGTGAAGGAGAAGAG......................................................................................................................................................................................2311.00100000000001000000
..............TCTCTGTTCGGCACCAACTTCGCCTAC....................................................................................................................................................................................................................................................................................................................................................................................2721.00200000001010000000
..................................................................................................................................................................................................................................................................................................TGCATTTGGGACAGC............................................................................................................1511.00100000000001000000
......................................................................................................................................................CAGA----AGATTGCGACCC...................................................................................................................................................................................................................................................1611.00100000001000000000
....AGTGTGCAACTCTCTGTTCGG....................................................................................................................................................................................................................................................................................................................................................................................................2121.00200000010100000000
.....................................................................................................................................................TCAGA----AGATTGCGACCCTG.................................................................................................................................................................................................................................................1911.00100000000000001000
............................................................................CAGACTCCAACTGCCGACAGCAA-------------CA...........................................................................................................................................................................................................................................................................................................2541.00400000003000010000
....................................................................................................................................................ATCAGA----AGATTGCGA......................................................................................................................................................................................................................................................1511.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................TCAACCACGAGTAATCTT------GAACTG...................2421.00200000001000010000
.....................................................................................................................................TCTTAACGGCCAGCAATCAGA----AGA............................................................................................................................................................................................................................................................2421.00200000010010000000
.................................................................................................................................................................................................................................................................................................TTGCATTTGGGACAGCTC..........................................................................................................1811.00100000000001000000
.....................................................................................................................................................................................................................................................................................T---------GCTTGCATTTGGGACAGCTCCTA.......................................................................................................2411.00100000000001000000
................................TTCGCCTACGGCGACAC---CGCTTAAGA................................................................................................................................................................................................................................................................................................................................................................2621.00200000001010000000
....................................................................................................................................................ATCAGA----AGATTGCGACCCTG.................................................................................................................................................................................................................................................2011.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................TTTTCAACCACGAGTAATCTT------GAACTGC..................2821.00200000011000000000
.......................................................................................................................................TTAACGGCCAGCAATCAGA----AGATTGCGAC.....................................................................................................................................................................................................................................................2911.00100000010000000000
............................................................ACACCAACTCCAACCGCAGAC............................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................TGATTT-TTTAGG---------------------TGGGCCGCAGCCGTT..................................................2730.67200000001001000000
..........................................................................................................................................................................................................................................................................................................................TGATTT-TTTAGG---------------------TGGGCCGCAGCCGT...................................................2630.67200020000000000000
............................................................................................................................................GGCCAGCAATCAGA----AGATTGCG.......................................................................................................................................................................................................................................................2230.67200000000002000000
.............................................................................................................................................GCCAGCAATCAGA----AGATTGCG.......................................................................................................................................................................................................................................................2130.67200000000002000000
...............................................................................................................................................................................................................................................................................................................................T-TTTAGG---------------------TGGGCCGCAGCCGTTTTC...............................................2530.67200000010001000000
......TGTGCAACTCTCTGTTCGGCACCAAC.............................................................................................................................................................................................................................................................................................................................................................................................2620.50100000000000010000
.....GTGTGCAACTCTCTGTTCGGC...................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000001000000000
.....................................................................................................................CTCGCCAACACGCCTCTCTTAACGGC..............................................................................................................................................................................................................................................................................2640.50200000011000000000
.......................................................................................................................................TTAACGGCCAGCAATCAGA----AG.............................................................................................................................................................................................................................................................2120.50100000010000000000
.............................................................................................................................CACGCCTCTCTTAACGGCCAGCAATCAGA----...............................................................................................................................................................................................................................................................2920.50100000000100000000
............................................................................CAGACTCCAACTGCCGACAGCAA-------------CACACC.......................................................................................................................................................................................................................................................................................................2940.50200000001000010000
...............CTCTGTTCGGCACCAACTTC..........................................................................................................................................................................................................................................................................................................................................................................................2020.50110000000000000000
....................................................................................................................................CTCTTAACGGCCAGCAATCAGA----AGAT...........................................................................................................................................................................................................................................................2620.50100010000000000000
...............................................................................................................................................................................................................................................................................................GCTTGCATTTGGGACAGCTCT.........................................................................................................2120.50100000000001000000
.................................................................................................................................................................................................................................................................................................TTGCATTTGGGACAG.............................................................................................................1520.50100000000001000000
.GAAAGTGTGCAACTCTCTGTTCGGCA..................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000000000010000
...............................................................................................................................CGCCTCTCTTAACGGCCAGCAATCAGA----AGA............................................................................................................................................................................................................................................................3020.50100000001000000000
.......................................................................................................................................TTAACGGCCAGCAATCAGA----AGAT...........................................................................................................................................................................................................................................................2320.50100100000000000000
....................TTCGGCACCAACTTCGCCTACGGCGA...............................................................................................................................................................................................................................................................................................................................................................................2620.50100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................ACGAGTAATCTT------GAACTGCA.................2020.50100000000001000000
...................................................................................................................................TCTCTTAACGGCCAGCAATCAGA----...............................................................................................................................................................................................................................................................2320.50100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................TTTTCAACCACGAGTAATCTT------GAACTGCA.................2920.50100000000000001000
.......................................................................................................................................TTAACGGCCAGCAATCAGA----AGA............................................................................................................................................................................................................................................................2220.50100000010000000000
................TCTGTTCGGCACCAACTTCGCCTACGGCGA...............................................................................................................................................................................................................................................................................................................................................................................3020.50100000010000000000
TGAAAGTGTGCAACTCTCTGTTCGGC...................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000001000000000
..............TCTCTGTTCGGCACCAACTTCG.........................................................................................................................................................................................................................................................................................................................................................................................2220.50100000000000001000
..................................................................................................................................................................................................................................................................................................TGCATTTGGGACAGCTCT.........................................................................................................1820.50100000000001000000
..................................................................................................................................CTCTCTTAACGGCCAGCAATCAGA----AGA............................................................................................................................................................................................................................................................2720.50100000001000000000
.......................................................................................................................................TTAACGGCCAGCAATCAGA----AGATTG.........................................................................................................................................................................................................................................................2520.50100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................TTCAACCACGAGTAATCTT------GAACTG...................2520.50100000001000000000
.................................................................................................................................CCTCTCTTAACGGCCAGCAATCAGA----...............................................................................................................................................................................................................................................................2520.50100000010000000000
................................................................................................................................GCCTCTCTTAACGGCCAGCAATCAGA----...............................................................................................................................................................................................................................................................2620.50100000001000000000
.......GTGCAACTCTCTGTTCGGCTT.................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000000000001000
..........CAACTCTCTGTTCGGCACCAACTTCA.........................................................................................................................................................................................................................................................................................................................................................................................2620.50100000000000001000
..................TGTTCGGCACCAACTTCGCCT......................................................................................................................................................................................................................................................................................................................................................................................2120.50100000001000000000
........TGCAACTCTCTGTTCGGCACCAACTTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................3020.50100000001000000000
.............................................................................................................................................................................................................................................................................................................................TTT-TTTAGG---------------------TGGGCCGCAGC......................................................2030.33100000000001000000
...................................................................................................................................................AATCAGA----AGATTGCGACCCTGA................................................................................................................................................................................................................................................2230.33110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TTTCAACCACGAGTAATCTT------GAA......................2330.33100000010000000000
..............................................................................................................................................................................................................................................................................................................................TT-TTTAGG---------------------TGGGCCGCAGCCGTTT.................................................2430.33100000000001000000
...........................................................................................................................................................................................................................................................................................................................GATTT-TTTAGG---------------------TGGGCCG..........................................................1830.33110000000000000000
......TGTGCAACTCTCTGTTCGGCTTT................................................................................................................................................................................................................................................................................................................................................................................................2330.33100000000000001000
..............................................................................................................................................................................................................................................................................................................................TT-TTTAGG---------------------TGGGCCGCAGCCGTT..................................................2330.33100000010000000000
......................................................................................................................................................CAGA----AGATTGCGACCCTGA................................................................................................................................................................................................................................................1930.33100000000000001000
........................................................................................................................................TAACGGCCAGCAATCAGA----AGATT..........................................................................................................................................................................................................................................................2330.33100000000000010000
....................................................................................................................................................ATCAGA----AGATTGCGACCCTGA................................................................................................................................................................................................................................................2130.33100000000000001000
........................................................................................................................................TAACGGCCAGCAATCAGA----AGATTGCG.......................................................................................................................................................................................................................................................2630.33100000001000000000
........................................................................................................................................TAACGGCCAGCAATCAGA----AGATTGC........................................................................................................................................................................................................................................................2530.33100000000001000000
........................................................................................................................................TAACGGCCAGCAATCAGA----AGAT...........................................................................................................................................................................................................................................................2230.33100000000000010000
.........................................................................................................................................................................................................................................................................................................................ATGATTT-TTTAGG---------------------TGGGC............................................................1830.33100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................CCGTTTTCAACCACGAGTAATCTT------GA.......................2630.33100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................CGTTTTCAACCACGAGTAATCTT------G........................2430.33100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTCAACCACGAGTAATC.................................1730.33100000000001000000
..................................................................................................................................................................................................................................................................................................................................TTAGG---------------------TGGGCCGCAGCCGTTTTCAAC............................................2630.33100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................GTTTTCAACCACGAGTAATCT................................2130.33100000000001000000
..............................................................................................................................................................................................................................................................................................................................TT-TTTAGG---------------------TGGGCCGCAGCCGTTTTC...............................................2630.33100010000000000000
...............................................................................................................................................CAGCAATCAGA----AGATTGCGACCCTGA................................................................................................................................................................................................................................................2630.33100000000001000000
............................................................................................................................................................................................................................................................................................................................................................TGGGCCGCAGCCGTTTTCAACCAC.........................................2430.33100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................AGCCGTTTTCAACCACGAC......................................1930.33100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TTTTCAACCACGAGTAATCTT------GAAC.....................2530.33100000000010000000
.............................................................................................................................................................................................................................................................................................................................TTT-TTTAGG---------------------TGGGCCG..........................................................1630.33100000000001000000
..............................................................................................................................................CCAGCAATCAGA----AGATTGC........................................................................................................................................................................................................................................................1930.33100000000001000000
...........................................................................GCAGACTCCAACTGCCGACAGCAA-------------CAC..........................................................................................................................................................................................................................................................................................................2740.25100000000000010000
.................................................................................................AA-------------CACACCTCGCCAACACGCCTCTCT.....................................................................................................................................................................................................................................................................................2640.25100010000000000000
............................................................................CAGACTCCAACTGCCGACAGCAA-------------CAC..........................................................................................................................................................................................................................................................................................................2640.25100000010000000000
............................................................................CAGACTCCAACTGCCGACAGCAA-------------CACA.........................................................................................................................................................................................................................................................................................................2740.25100000000100000000
.........................................................................................................................................................................................................................................................................................................................ATGATTT-TTTAGG---------------------TGGGCCGTTT.......................................................2340.25100000000000001000
....................................................................................................................................CTCTTAACGGCCAGCAAT.......................................................................................................................................................................................................................................................................1840.25100010000000000000
............................................................................CAGACTCCAACTGCCGACAGCAA-------------CACACCT......................................................................................................................................................................................................................................................................................................3040.25100000010000000000
..............................................................................GACTCCAACTGCCGACAGCAA-------------CACACCT......................................................................................................................................................................................................................................................................................................2840.25100100000000000000
..........................................................................CGCAGACTCCAACTGCCGACAGCAA-------------CA...........................................................................................................................................................................................................................................................................................................2740.25100000001000000000
............................................................................CAGACTCCAACTGCCGACAGC............................................................................................................................................................................................................................................................................................................................2140.25100000010000000000
..........................................................................................................................CAACACGCCTCTCTTAACGGC..............................................................................................................................................................................................................................................................................2140.25100000001000000000
................................................................................CTCCAACTGCCGACAGCAA-------------CACACCT......................................................................................................................................................................................................................................................................................................2650.20100100000000000000
.................................................................................TCCAACTGCCGACAGCAA-------------CACACCTCGC...................................................................................................................................................................................................................................................................................................2850.20100000000000001000
.................................................................................TCCAACTGCCGACAGCAA-------------CACAA........................................................................................................................................................................................................................................................................................................2350.20100000000000010000
..................................................................................................A-------------CACACCTCGCCAACACGCCT.........................................................................................................................................................................................................................................................................................2150.20100000000001000000
.........................................................................................CCGACAGCAA-------------CACACCTCGCCAACACGCC..........................................................................................................................................................................................................................................................................................2950.20100010000000000000
................................................................................................CAA-------------CACACCTCGCCAACACGC...........................................................................................................................................................................................................................................................................................2150.20100000000000001000
..............................................................................................AGCAA-------------CACACCTCGCCAACACGCC..........................................................................................................................................................................................................................................................................................2450.20100000000000010000
...............................................................................ACTCCAACTGCCGACAGCAA-------------CACAC........................................................................................................................................................................................................................................................................................................2550.20100000000000010000
..........................................................................................CGACAGCAA-------------CACACCTCGCCAACACGCC..........................................................................................................................................................................................................................................................................................2850.20100000000000010000
.......................................................................................TGCCGACAGCAA-------------CACACCTCGCCAA................................................................................................................................................................................................................................................................................................2560.17100000000000010000
...........................................................................................GACAGCAA-------------CACACCTCGCCAA................................................................................................................................................................................................................................................................................................2160.17100000000000001000
.......................................................................................TGCCGACAGCAA-------------CACACCTCGCCAACA..............................................................................................................................................................................................................................................................................................2760.17100000010000000000
.....................................................................................................................................................TCAGA----AGATTGCGAG.....................................................................................................................................................................................................................................................1570.14100000000100000000
droSec2
TGAAAGTGTGCAACTCTCTGTTTGGCACCAACTTCGCCTACGACGACAC---CGCTAAAGACACCAACTCCAACCGCAGACTCCAACTGCCGACAGCAA-------------CACACCTCGCCAACACGCCTCTCTTAACGGCCAGCAATCAGA----AGATTGCGTCCCTGACTTCAAATGCGCAACTC---AAAGAAT--------TCCTTCTCGGTGA------AGAGG----------------CATATTAAACAA---GAATTTTCCAATTTA---------GCTTGCATTTGGGACAGCTCCTACCCATGATTT-TTTAGG---------------------TGGGCCGCAGCCGTTTTAAACCACGAGTAATCTT------GAACTGCAA----------GATTATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................CAGA----AGATTGCGTCCCTGACTTCAAAT........................................................................................................................................................................................................................................2760.1711000
................................................................................................................................................................................CAAATGCGCAACTC---AAAGAAT--------TCCTT........................................................................................................................................................................................................2660.1711000
.........................................................................................................................................................................................................................................................................................................................ATGATTT-TTTAGG---------------------TGGGC............................................................1880.1311000
....................................................................................................................................................................................................................................................................................TA---------GCTTGCATTTGGGACAGCT...........................................................................................................2180.1310001
..................................................................................................................................................................................................................................................................................TTTA---------GCTTGCATTTGGGACAG.............................................................................................................2180.1310001
.................................................................................................................................................................................................................................................................................ATTTA---------GCTTGCATTTGGGACA..............................................................................................................2180.1310100
...........................................................GACACCAACTCCAACCGCAGACT...........................................................................................................................................................................................................................................................................................................................................23190.0510010
................................................................CAACTCCAACCGCAGACTCCA........................................................................................................................................................................................................................................................................................................................................21200.0511000
dm3
G---------CGACACCACTTAAGACACCAACTCCAACCGCAG------------------------------------ACTCCAACTGCCGACGACA-------------ACACAC-------CTATGCCTCTCTTAACGGACAGCAATCAGA----AGATTGCGACCCTGACGTCAATGGCGCAACTT---TAAGAAT--------TCCTTTTCTGTCAAAGTGAAGAGG----------------CATATTAAACAA---GAATTTCCCAATTTA---------GTTTGTATTTGGGACAGCTCTTACTTATGATTT-TTTAGG---------------------TGGGCCGGAGCCGTTTTCAACAACGAATAATTTT------GAACTGCAAGAGCCGATAAGATTATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................T-TTTAGG---------------------TGGGCCGGAGCCGTTTTC...............................................25130.00300000000000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003030000000000000000000000000000000000000100000040000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000111050000113000000000000000002100000
..............................................................................................................................................................................................................................................................................................................................TT-TTTAGG---------------------TGGGCCGGAGCCGTTTTC...............................................26117.00170000000000000000000000000000000000000102000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000020000000000100000000000000000000000000000000000000000000000000000000100000000000000000010000000000000000000000210300100
....................................................................................................................................................................................................................................................................................................................................................................................GAATAATTTT------GAACTGCAAGAGC............23115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003500700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TTT-TTTAGG---------------------TGGGCCGGAGCCGTT..................................................24114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010000000010001000000210100110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110100000
........................................................................................................................................TAACGGACAGCAATCAGA----AGATTGCGA......................................................................................................................................................................................................................................................27412.75510000000000000000000000000000000000001000000000000010100000000000000000000000022030000000000000000000000000000000000000000000000000000000000000003000001200300000000000000000000000000000000000003100000000001002050000000110003000000000000000000000000000000100000000000000000000000000000000100000000000000200300000000000000001403000
..........................................................................................................................................................................................................................................................................................................................................................................................TTTT------GAACTGCAAGAGCCGATAAGA....25112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000101110000000000000000000000000000000000000000000000000000000000000000000000020000000001000000000000000200000
....................................................................................................................................................................................................................................................................................................................................................................................GAATAATTTT------GAACTGCAAGAGCCGA.........26111.00110000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000110000000000000000200100000
..............................................................................................................................................................................................................................................................................................................................TT-TTTAGG---------------------TGGGCCGGAGCCGTTT.................................................24110.00100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200400000
......................................................................................................................................................................................................................................................................................................TTTGGGACAGCTCTTACTTATGATT..............................................................................................25110.00100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010100000
....................TAAGACACCAACTCCAACCGCAG------------------------------------AC............................................................................................................................................................................................................................................................................................................................................2579.2965000000000000000000000000000000000000000000000000000000000000000000000000000002120000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000023040000000000000008110121760011000000001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AACGAATAATTTT------GAACTGCAAGAGC............2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TATGATTT-TTTAGG---------------------TGGGCCGGAGCCGT...................................................2819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000005
..........................................................................................................................................................................................................................................................................................................................................................................................TTTT------GAACTGCAAGAGCCGATAAGAT...2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000101100000
........................................................................................................................................TAACGGACAGCAATCAGA----AGATTGCGAC.....................................................................................................................................................................................................................................................2848.75350000000000000000000000000000000000000000000000000001000000000000000000000000039410000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000000000000000000002000000000000000002300201100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000002000
.....................................................................................................................................TCTTAACGGACAGCAATCAGA----AGAT...........................................................................................................................................................................................................................................................2548.25330000000000000000000000000000000000000000000000000000000000000000000000000000011010003000000000000000000000000000000000000000000000000001000000000000001000000000000000000000000000000000000000000100000000100000202000000000407410000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
....................................................................................................................................................................................................................................................................................................TATTTGGGACAGCTCTTACTTATGAT...............................................................................................2618.0080000000000000000000000000000000000001000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000100000000010000000
.................................................................................................................................................................................................................................................................................................................................TTTAGG---------------------TGGGCCGGAGCCGTTTTC...............................................2418.0080000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000001010000000000000010200000
......................................................................................................................................................CAGA----AGATTGCGACCCTGACGTCAAT.........................................................................................................................................................................................................................................2648.00320000000000000000000000000000000000000000000000000111000000000000000000000000012320000000000000000000000000000000000000000000000000000000000020000000000020000000000000000000000000000000000001000000000000000100100000000010000000000000000000000000000100000000000000000000000000000000000000000000001000000000001000000000000311302000
....................................................................................................................................................................................................................................................................................................................................................................................................GAACTGCAAGAGCCGATAAGA....2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000
....................................................................................................................................................................................................................................................................................................TATTTGGGACAGCTCTTACTTATGATT..............................................................................................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000002000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000
.....................................................................................................................................................TCAGA----AGATTGCGACCCTGACGTCAAT.........................................................................................................................................................................................................................................2747.25290000000000000000000000000000000000000001000100000000100000000000000000000000031350000000000000000000000000000000000000000000000000000000000000000010100102000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000111202000
.......................................................................................................................................................................................................................................................................................................................................................................................TAATTTT------GAACTGCAAGAGC............2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TATTTGGGACAGCTCTTACTTATGA................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000100000000000210000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GATTT-TTTAGG---------------------TGGGCCGGAGCCGTT..................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................TAACGGACAGCAATCAGA----AGATTGC........................................................................................................................................................................................................................................................2546.25250000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000200000000000000000000000010317200000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000
....................TAAGACACCAACTCCAACCGCAG------------------------------------ACTC..........................................................................................................................................................................................................................................................................................................................................2776.144300000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000000000001000000001005000000000000000504010830000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TTTGGGACAGCTCTTACTTATGATTT-............................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................T------GAACTGCAAGAGCCGATAAGATTA.2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000200110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................GA----AGATTGCGACCCTGACGTCAATGGC......................................................................................................................................................................................................................................2755.60280000000000000000000000000000000000000000000000000000000000000000000000000000020020000000000000000000000000000000000000000000000000000000020100002000101000000000000000000000000000000000000010000000000000100000000000001120102400000000000000000000000000000000000000000000000000000000000000000000011000000010001000000000000000000000
......................................................................................................................................................................................................................................................................................................TTTGGGACAGCTCTTACTTATGAT...............................................................................................2415.0050000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000003
......................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAGAGCCGATAAGAT...2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TGATTT-TTTAGG---------------------TGGGCCGGAGCCGTT..................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000020001000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GATTT-TTTAGG---------------------TGGGCCGGA........................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
.................................................................................................................................................................................................................................................................................................................................TTTAGG---------------------TGGGCCGGAGCCGTTTTCAAC............................................2715.0050000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...................TTAAGACACCAACTCCAACCGCAG------------------------------------AC............................................................................................................................................................................................................................................................................................................................................2674.293000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000100000000001002000000000000000201011720001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TAATTTT------GAACTGCAAGAGCCGA.........2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................TTT------GAACTGCAAGAGCCGATAAGAT...2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TTT-TTTAGG---------------------TGGGCCGGAGCCGTTT.................................................2514.0040000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TGATTT-TTTAGG---------------------TGGGCCGGAGCCGT...................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TTTAGG---------------------TGGGCCGGAGCCGTTTTCAA.............................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................................................................................................................................................................................................................................................................................................................................................TGGGCCGGAGCCGTTTTCAACAACG........................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TAATTTT------GAACTGCAAGAGCCGATAAGA....2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................T-TTTAGG---------------------TGGGCCGGAGCCGTTT.................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
.....................................................................................................................................................................................................................................................................................................................................................................GCCGTTTTCAACAACGAATAATTTT------GAAC.....................2914.0040000000000000000000000000000000000000000000000000000000000000000000000000000022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................T---TAAGAAT--------TCCTTTTCTGTCAAAGTGAA.........................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTCAACAACGAATAATTTT------GAACTGCAAGA..............3014.0040000000000000000000000000000000000000000000000000000000000000000000000000000020020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TTAACGGACAGCAATCAGA----AGATTGCGA......................................................................................................................................................................................................................................................2843.75150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021111100000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010301000
.......................................................................................................................................TTAACGGACAGCAATCAGA----AGATTGCGAC.....................................................................................................................................................................................................................................................2943.50140000000000000000000000000000000000000000000000000000000000000000000000000000020060000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................TAAGACACCAACTCCAACCGCAG------------------------------------ACT...........................................................................................................................................................................................................................................................................................................................................2673.29230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100900000000000000021002520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................T-TTTAGG---------------------TGGGCCGGAGCCGTTTTCAA.............................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000200000
......................................................................................................................................................................................................................................................................................................................................................................................ATAATTTT------GAACTGCAAGC..............1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................ATTTT------GAACTGCAAGAGCCGATAAGA....2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000010000
.............................................................................................................................................................................................................................................................................................................................TTT-TTTAGG---------------------TGGGCCGGAGC......................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000110000
..................................................................................................................................................................................................................................................................................................................................TTAGG---------------------TGGGCCGGAGCCGTTTTCAACAA..........................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................ATATTAAACAA---GAATTTCC..............................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AATAATTTT------GAACTGCAAGAGCCGA.........2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................TTTA---------GTTTGTATTTGGGACAGCTCT.........................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TTTAGG---------------------TGGGCCGGAGCCGTTT.................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TT------GAACTGCAAGAGCCGATAAGATTA.2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................AATGGCGCAACTT---TAAGAAT--------TCCTTT.......................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TACTTATGATTT-TTTAGG---------------------TGGGCCGGA........................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................AACGAATAATTTT------GAACTGCAAGAGCC...........2713.0030000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................AAAGTGAAGAGG----------------CATATTAAAC...........................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................T------GAACTGCAAGAGCCGATAAG.....2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TGTATTTGGGACAGCTCTTACTTATG.................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TATGATTT-TTTAGG---------------------TGGGCCGGAGCCGTT..................................................2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TAGG---------------------TGGGCCGGAGCCGTTTTCAAC............................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TTACTTATGATTT-TTTAGG---------------------TGGGCCGGA........................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................AACGGACAGCAATCAGA----AGATTGCGAC.....................................................................................................................................................................................................................................................2742.75110000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000400000000000000100000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TCTCTTAACGGACAGCAATCAGA----AGAT...........................................................................................................................................................................................................................................................2732.6780000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201100000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000
...............................................................................................................................................................GATTGCGACCCTGACGTCAATGGCGC....................................................................................................................................................................................................................................2652.60130000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000200000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000020010101000000000000000001000000
..................................................................................................................................................................TGCGACCCTGACGTCAATGGCGC....................................................................................................................................................................................................................................2352.60130000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000002000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007
................................................................................................................CACAC-------CTATGCCTCTCTTAACGGACA............................................................................................................................................................................................................................................................................2662.50150100000000000000000000000000000000000000000000000000000000100000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010103410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TGCGACCCTGACGTCAATGGCGCAAC.................................................................................................................................................................................................................................2652.40120000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016000100020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................AGA----AGATTGCGACCCTGACGTC............................................................................................................................................................................................................................................2242.2590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TTAACGGACAGCAATCAGA----AGATTGC........................................................................................................................................................................................................................................................2642.2590000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000401001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CACCAACTCCAACCGCAG------------------------------------ACT...........................................................................................................................................................................................................................................................................................................................................2172.14150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100119000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CACCAACTCCAACCGCAG------------------------------------ACTCCAAC......................................................................................................................................................................................................................................................................................................................................2672.14150000000000000000000000000000000000000000000000000000000000000000000000000000000010020010000000000000000000000000000500000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000200110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................CAACTT---TAAGAAT--------TCCTTTTCTGT..................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................T------GAACTGCAAGAGCCGATAAGATT..2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTCTGTCAAAGTGAAGAGG----------------CATATT...............................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000
................................TCCAACCGCAG------------------------------------ACTCCAACTGCCGAC...............................................................................................................................................................................................................................................................................................................................2652.00100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TTTGTATTTGGGACAGCTCTTACTTA...................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TTT-TTTAGG---------------------TGGGCCGGAGCCGTTTTCA..............................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................................................................................................................................................................................T-TTTAGG---------------------TGGGCCGGAGCCGTTTT................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................ATTT-TTTAGG---------------------TGGGCCGGAGCCGTT..................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TT-TTTAGG---------------------TGGGCCGGAGC......................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droEre2
TAGAGGTGTGCAACTCTCTGTTTGGCACCAACTTCACCTGCAGCGACAC---ATCTTAAGAGACCAATAC---------------------------AGTACTGC---AATACACAC-------CGATGCCTCTCTTAACGGCCAGCGATCCGA----GGATTGTGACCCTGACGTCAAATGCGCAACTTTGTTAAGAAGATGAAAGATTTTTGTCTGTGAAGATGAAAAGG----------------CATATTAAACAATAGGTATTTTCCATTTTA---------GTTTGCATTTTGCTCAGCTCTTACTTATGATTTCCTTAGG---TAGCATTAGTACATACGG-GGGTCACAGCCCTTTTCAATC-TAAAAAATCTTAAAAATGAACTATGA---------AGGTTATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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..................................................................................................................................................................TGTGACCCTGACGTCAAATGCG.....................................................................................................................................................................................................................................2211.0010100000
.....................................................................................................................................................................................................................................................................................A---------GTTTGCATTTTGCTCAGCTCTTACT.....................................................................................................2611.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................CTTAAAAATGAACTATGA---------AG.....2011.0010000010
.............................................................................................................................................................................................................................................................................................................................................CATTAGTACATACGG-GGGTCAC.........................................................2211.0010000100
................................................................................................................................................................ATTGTGACCCTGACGTCAAATGCGC....................................................................................................................................................................................................................................2511.0010000010
...................................................................................................................................................................................................................................................................................................GCATTTTGCTCAGCTCTTACT.....................................................................................................2111.0010100000
.................................................................................................................ACAC-------CGATGCCTCTCTTAACGGCCAGCGA........................................................................................................................................................................................................................................................................2911.0010000100
..............................................................................................................................................................................................................................................................AAACAATAGGTATTTTCCATTTTA---------GT............................................................................................................................2611.0010000010
.......................GGCACCAACTTCACCTGCAGCGACAC---.........................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
...............................................................................................................................TGCCTCTCTTAACGGCCAGCGATCCGA----G..............................................................................................................................................................................................................................................................2811.0011000000
.......................................................................................................................................................CGA----GGATTGTGACCCTGACGTCAAATG.......................................................................................................................................................................................................................................2711.0010001000
.........................................................................................................................................................................................................................................................ATATTAAACAATAGGTATTTTCCATT..........................................................................................................................................2611.0011000000
.................................................................................................................................CCTCTCTTAACGGCCAGC..........................................................................................................................................................................................................................................................................1811.0010000010
droYak3
TGGAAGTGTGCAACTCTCTGTTCGGCACCAACTTCACCTACAGCGACAC---AGCTTAAGACACCAACTGTA--------------------------G---TACACACACACACAC-------GAATGCCTCCCTTAACGGCCAGCAATCCGA----AGATTGTGACCCTGACGTCAAATGCGCAACTTTGTTAAGAAT--------TCCTTTTTTGTGAAGATGAAGAGG----------------CATATTAAACAATAGGTATTTTCCATTATA---------GTTTGCATTTGGGTCAGATCTTACTTGCGAATTCCTTAGGCATTAGCTTAAGTATATGCAGTGGGTCACAGCCTTTTTCAACCAGTGGTAAACTA------AAACTGTAA----------GAGTCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................GTGAAGATGAAGAGG----------------CAT..................................................................................................................................................................1811.00100000010000
..................................................................................................................................................................TGTGACCCTGACGTCAAAT........................................................................................................................................................................................................................................1911.00100000010000
..............................................................................................................................................................................................................................GATGAAGAGG----------------CATATTAAACAATAGGT....................................................................................................................................................2711.00100000010000
........................................................................................................................................................................................................................................................................................................................................ATTAGCTTAAGTATATGCAGTGGGT............................................................2511.00100000010000
.........................................................................................................................................................................CTGACGTCAAATGCGCAACTTTGT............................................................................................................................................................................................................................2411.00110000000000
....................................................................................................................................................................................................................................................................................................CATTTGGGTCAGATCTTACTTGCGA................................................................................................2511.00100000010000
.....................................................................................................................................................................................................................TTTTGTGAAGATGAAGAGG----------------.....................................................................................................................................................................1911.00100000010000
.......................................................................................................................................................CGA----AGATTGTGACCCTGAC...............................................................................................................................................................................................................................................1911.00100100000000
.................................................................................................................................................................................................................CCTTTTTTGTGAAGATGAAGAGG----------------CA...................................................................................................................................................................2511.00100000010000
droEug1
TGAAAGTGTGCAACACTTTGTTCGGAACAAACTTCACGTATAGTGACATTTCATCTTAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTGAAGTGTGCAACACTCTCTTCGGAACAAACTTCTCGTACGGCGACACTTCATCTTAAGACATCGATAG--------------------------------------AAAGCACAC-------CTATGCCCCACTTAGCGGCCCCATCTCCAA----AAACGTTGGCCGTAAAGTCAAACGCGCAACTGTTCTTAGAAT--------TACT-----ATGA---AGAAATTG----------------GTTGCCGAACAATGAGTATTTTACATTTTT---------TTTACCGTTTCGGTCAG-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTGAAGTGTGCAACACTCTGTTCGGCACAAACTTCTCGTACAGCGACACCTCTTCTTAAGACATTTAT----------------------------------------------CAC-------CTATGCCCCGCTTAACGGCCTCATTTCCAAAAAAAAACTTGAGCCGTAAAGTCCAGTGCGCAACTAT-----------------TTCTTGACTATAAAACAGAA--CGGCTACCAAATGATGCACATATTATACT----------------TCCTTTAATTATATTTGCATTTGGAA----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGGAAGTGTGCAACACTCTGTTCGGAACGAACTTTGCGTTTGGCGACACTTCATCTTAAGGCATTTATTTCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGGAAGTGTGCAACACTCTTTTCGGAACGAACTTTGCGTTAAGTGACACTTAAGCTTAAGACATTTTT----------------------------------------AAAACGCAC-------CCATACCATGCTTAACGGCAACATCTCTAA----ACACTGCGGCCGTAAAGTCAAATGCGCAAAAATTTATAGAAC--------TTATTCTATACGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TAGAAGTGTGCAACACTCTGTTCGGAACGAACTTCGCCTATGGCGACAC---AGCTTAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTAGTGTTTGCAACACGCTGTTTGGCACCAACTTTTCGTTCGAAAACCCTACAGCTTAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GCATTTGGCGTTG--CTCCTCCGGCTGCCATCTCTGCCCGCACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCTTGAAGCTGTGTTACTATT------AGACTCTAA----------AGCAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......GCGTTG--CTCCTCCGGCTGCCATCTCT..........................................................................................................................................................................................................................................................................................................................................................................................26201.70343400000
.......GCGTTG--CTCCTCCGGCTGCCATCTC...........................................................................................................................................................................................................................................................................................................................................................................................25201.55313010000
.......GCGTTG--CTCCTCCGGCTGCCATCTCTG.........................................................................................................................................................................................................................................................................................................................................................................................27200.85171700000
.......GCGTTG--CTCCTCCGGCTGCCATCT............................................................................................................................................................................................................................................................................................................................................................................................24200.408800000
.......GCGTTG--CTCCTCCGGCTGCCATCTCTGC........................................................................................................................................................................................................................................................................................................................................................................................28200.204400000
........CGTTG--CTCCTCCGGCTGCCATCTC...........................................................................................................................................................................................................................................................................................................................................................................................24200.204400000
........CGTTG--CTCCTCCGGCTGCCATCTCT..........................................................................................................................................................................................................................................................................................................................................................................................25200.204400000
.......GCGTTG--CTCCTCCGGCTGCCATC.............................................................................................................................................................................................................................................................................................................................................................................................23200.204040000
................TCCTCCGGCTGCCATCTCTGCCC......................................................................................................................................................................................................................................................................................................................................................................................23200.153030000
...TTTGGCGTTG--CTCCTCCGGCTG..................................................................................................................................................................................................................................................................................................................................................................................................22200.153300000
.......GCGTTG--CTCCTCCGGCTGCCATCTCTT.........................................................................................................................................................................................................................................................................................................................................................................................27200.102200000
........CGTTG--CTCCTCCGGCTGCCATCT............................................................................................................................................................................................................................................................................................................................................................................................23200.102200000
......GGCGTTG--CTCCTCCGGCTGCCATT.............................................................................................................................................................................................................................................................................................................................................................................................24200.102200000
...........TG--CTCCTCCGGCTGCCATCTCTG.........................................................................................................................................................................................................................................................................................................................................................................................23200.102200000
GCATTTGGCGTTG--CTCCTCCGGCTG..................................................................................................................................................................................................................................................................................................................................................................................................25190.051100000
....TTGGCGTTG--CTCCTCCGGCTG..................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.......GCGTTG--CTCCTCCGGCTGCCAT..............................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.......GCGTTG--CTCCTCCGGCTGCCATCTCTA.........................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
....TTGGCGTTG--CTCCTCCGGCT...................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...TTTGGCGTTG--CTCCTCCGGCTGC.................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.......GCGTTG--CTCCTCCGGCTGC.................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
....TTGGCGTTG--CTCCTCCGGCTGCCA...............................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.................CCTCCGGCTGCCATCTCT..........................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
.....TGGCGTTG--CTCCTCCGGCTGC.................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
.......GCGTTG--CTCCTCCGGCTGCCATCTCC..........................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
.....TGGCGTTG--CTCCTCCGGCTGCCAT..............................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
droBip1
TTAATGTGTGCAATACATTGTTTGGCACCAACTTCACCTACGAGAACAC---CGCTTAAAGAACCCAA--------------GGAACAAGGATTAACAA-------------CTCTGCTAGCAACTATACCCTTCTTAACGGCCTATGGTCATA----GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TGAATGTTTGCAACACATTGTTCGGCACCAATTTCACATATGAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................ATTGTTCGGCACCAATTTCACA.......................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
.....GTTTGCAACACATTGTTCGG....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............CATTGTTCGGCACCAATTTCAC........................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
droPer2
CGAATGCTTGCAACATATTGTTCGGAACCAATTTCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TAAATGTTTGCAACACGTTGTTTGGCACCAAATTCGACGGCG---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TCAATGTTTGCAACAGTTTGTTTAACACCAATTTCATATATGAGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TCAATGTATGCAACACATTGTTCAACACAAATTTCATATATGAGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TAAGTGTTTGCAACACTTTGTTCAACACAAACTTTGTCTACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:13 PM