dsi_11669

CDS [2l_2130027_2130260_-]; exon [2l_2130027_2130545_-]; intron [2l_2129637_2130026_-]

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAACGTCGGCGGCATCCCAGCCTTACCTCAATGGCAACTACCAGCAGCAGGTGAATAGATAGCTTTAACCATGGCAGCTTTAACAAGAATTGGAAAACAATCCCGCTGCACTCGTCAAATATATGTGTATTCCCTTCAACTTCATTCTGGCGATAGCCTATTGGGCTAGTTGATAATAAGAATAGGGTTAGAATCTGAAATGAATTGCAGAATTACGTTACTCTTTTGAACCAATTGGCCACCTTGATAT ************************************************.....(((((...(((((((...(((((.............(((......))).)))))..((((((.......((............)).......))))))((((((...)))))).................))))))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	M053 female body	SRR553487 NRT_0-2 hours eggs	M025 embryo	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo
........................................................................................................................................................................................................TGAATTGCAGAATTCCGTGAATC...........................	23	3	1	23.00	23	12	6	2	3	0	0	0	0	0	0
.........................................................................................................................................................................................................GAATTGCAGAATTCCGTGAATC...........................	22	3	2	8.00	16	6	2	6	2	0	0	0	0	0	0
........................................................................................................................................................................................................TGAATTGCAGAATTCCGTGAAT............................	22	3	5	2.20	11	6	3	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................TGAATTGCAGAATTCCGT................................	18	1	2	1.50	3	0	0	0	0	0	2	0	1	0	0
..............................ATGGCAACTACCAGCAGCAGTTGGC...................................................................................................................................................................................................	25	3	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................CTATTGGGCTAGTTGATAATAAGA.....................................................................	24	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................GAATTACGTTACTCTTTTGAACC..................	23	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................AATTGCAGAATTCCGTGAATC...........................	21	3	4	0.75	3	1	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGAATTGCAGAATCCCG.................................	17	2	17	0.65	11	0	0	0	8	0	0	0	3	0	0
.....................................................................................................................................................................................................ATGTGAATTGCAGAATTCCGT................................	21	3	5	0.60	3	1	0	2	0	0	0	0	0	0	0
............................................................................................................................................................................................TAGAATCTGAAATCAAGTG...........................................	19	2	5	0.40	2	0	0	0	0	0	0	0	0	2	0
...........................................................................................................................................................................................................ATTGCAGAATTCCGTGAATC...........................	20	3	10	0.40	4	2	0	0	0	1	0	0	0	0	1
.....................................................................................................................................................................................................AAGTGAATTGCAGAATTCC..................................	19	2	4	0.25	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................AGGGTTAGAATCTGA....................................................	15	0	15	0.20	3	0	0	0	3	0	0	0	0	0	0
..................................................................................................................................................................GGGCTAGTCGATCCTAAGA.....................................................................	19	3	5	0.20	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................CATTCTGAGGATAGCATATT........................................................................................	20	3	9	0.11	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................ATGTGAATTGCAGAATTCCG.................................	20	3	10	0.10	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................GTTGAAAATAAGATTAGGGC..............................................................	20	3	12	0.08	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................ATTCCCTTCATCCTCATT........................................................................................................	18	2	14	0.07	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................TAGGGTTAGAATCTGA....................................................	16	0	15	0.07	1	0	0	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................TTGCAGAATTTCGTGAATC...........................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1
....................................................................................TAGAATTGGAAAACAAGC....................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	1	0	0	0	0

GTTGCAGCCGCCGTAGGGTCGGAATGGAGTTACCGTTGATGGTCGTCGTCCACTTATCTATCGAAATTGGTACCGTCGAAATTGTTCTTAACCTTTTGTTAGGGCGACGTGAGCAGTTTATATACACATAAGGGAAGTTGAAGTAAGACCGCTATCGGATAACCCGATCAACTATTATTCTTATCCCAATCTTAGACTTTACTTAACGTCTTAATGCAATGAGAAAACTTGGTTAACCGGTGGAACTATA ************************************************.....(((((...(((((((...(((((.............(((......))).)))))..((((((.......((............)).......))))))((((((...)))))).................))))))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M053 female body	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis
.....................................................................................................................................................................................................................AGGCAATGAGAAAAC......................	15	1	17	0.24	4	3	0	0	0	0	1	0	0
....................................................................................................................................GGAAGTTGTAGTAAGA......................................................................................................	16	1	7	0.14	1	0	1	0	0	0	0	0	0
....................................................................................................................................GGAAGTTGTAGTAAG.......................................................................................................	15	1	20	0.10	2	0	2	0	0	0	0	0	0
............................................................................................................................................................................................ACCTTAGATTTTACTTAA............................................	18	2	20	0.10	2	0	0	0	2	0	0	0	0
..................................................................................................................................AAGGAAGTTGTAGTAAGA......................................................................................................	18	2	11	0.09	1	0	1	0	0	0	0	0	0
...............................................................................................................................................TTAGACCGCTACCGGAT..........................................................................................	17	2	13	0.08	1	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................GAGGAAACTTGGTTA...............	15	1	13	0.08	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................ATCCCAATCTTAGACT....................................................	16	0	15	0.07	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CTTGGTTAACCGGCTGAGC....	19	3	17	0.06	1	0	0	0	0	1	0	0	0
..............................................................................AAATTGTTCTTAACTATT..........................................................................................................................................................	18	2	20	0.05	1	1	0	0	0	0	0	0	0
............................................................TCGAAAGTGGTACCTTGG............................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................ATGCAATGAGAAATCC.....................	16	2	20	0.05	1	0	0	1	0	0	0	0	0
...............................................................................................TTTTTAGGGCGAGGTGAGA........................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:2129827-2130076 -	dsi_11669	CAAC--------------GTCGGCGGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTTACCTCAATGGCAACTACCAGCAGCAGGTGAATAG-ATAGCTTTAACCATGGCAGCTTTAACAAGAATTGGAAAACAATCCCG---------------------CTGCACTCGTCAAATATATGTGTATTC-----CCTTCAACTT------CATTCTGGC-------------------------------GATAGCCTATT------G---GG---------------C---------------------------------TAGTTGATAATAAGAATAGGGTTAGAATCTGAAATGAATTGCAGAATTACGTTACTCTTTTGAACCAATTGGCCACCTTGATAT-------------------------------
droSec2	scaffold_5:411095-411338 -		CAAC--------------GTCGGCGGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTTACCTCAATGGCAACTACCAGCAGCAGGTGAATAG-ATAGCTTTAACCATGGCAGCTTTAACAAGAATTGGAAGACAATCCCG---------------------CTGCACACGTCAAATATATGTGTATTC-----CCTCCGGCTT------CATTCTGGC-------------------------------AATAGACTATT------G---GG---------------C---------------------------------TAGTTGATAATAAGAATAGGGTTAGAATCTGAAATGAATTGCAGAATTACGTTACTCTTTTGAACCAATTGGCCACCT-------------------------------------
dm3	chr2L:2236108-2236357 -		CAAC--------------GTCGGCGGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTTACCTCAATGGCAACTACCAGCAGCAGGTGAATAG-ATAGCCTTAACCATGGCAGCTTTGACGAGAATCGGAAGACAATCCGG---------------------TTGCACACGTCAAATATATGTGTATTC-----CCTTCAGCTT------CATTCTGGC-------------------------------AATAGCCTATT------G---AG---------------C---------------------------------TAGTCGATAATAAGAATAGGGTTAGAATCTGAAAAGCATTGCAGAATTACGTTACTCTTTTGAACCAATTGGCCACCTTGATAT-------------------------------
droEre2	scaffold_4929:2271442-2271723 -		CAAC--------------GTCGGCAGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTTACCTCAATGGCAACTACCAACAGCAGGTGAATGGGATAGCTTTATGCATGATAGCCTTAACAAGAATTTGCAGACCATCC-----------------------------------------TGTATAATC-----CGCCCAGCTT------CATCCTGGTCTTCTTGATTTTCACATTTGGATCAAACTGAAGTAGCCCATC------A---AT----------------TTTCATCACAGAATTTATAAATATTATG-------ATTGACAATAAGAATAGGGTTAGAATCTGAAAG------------------------------CCATTGGT---ATTGATATAATTA---ACATACATATTTAAAACTAGTTT
droYak3	2L:2209203-2209462 -		CAAC--------------GTCGGCGGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCATACCTCAATGGCAACTACCAGCAGCAGGTGAATGGCATAGCTTTATCCATGATAGCTTTAAT-AGAATGGACGAAGCATCC-----------------------------------------TGTAAATTC-----CGGCCAGCTT------CATCCTGGTCTTCTTCAAT--------------AAACTGAAATAGTCCATC------A---AG---------------CTTTTATTATTGAATTTATCAATATTATGATCCCTAATTGACAATAAGAAAAGAGTTAGAATCTGAA-------------------------------TCCATTGGT---ATTGATATAATTAGAAATATAC-----------------
droEug1	scf7180000409711:4775247-4775398 -		CCGC--------------AGCAGCAAT---------------C------TTTTGGCCTAGCGGACAGCAGCAAC---AACAA---CAACAACAACAACAG------------------------------------CAACGGCAGCAGCA------------GCAACAACAACAACA---GCAA----------------C--------------------------------------------------------------------------------------------------------------------------------GGCGTCTCCTCGAA-----A-------TCATTTGTG----C-----CCTGCAAAGTCTG--------TGGC-------------------------------GACAAGGCATC------G---GG---------------C---------------------------------TA-----------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302193:4804497-4804642 -		CCGC--------------AGCAGCAAT---------------C------TTTTGGCCTAGCCGACAGCAGCAAC---AACAACAGCAACGGC---AG---------------------------------------------------CAACAGCAACA---GCAACAGCAACAACA---CCAA----------------C--------------------------------------------------------------------------------------------------------------------------------GGGGTCTCCTCGAA-----G-------TCATTTGTG----C-----CCTGCAAAGTCTG--------TGGC-------------------------------GACAAGGCATC------G---GG---------------C---------------------------------TA-----------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415310:699302-699467 -		CAAC--------------CGCAGCAGC---------------AG-----------------------C---AACAAGACCAA---CAGCAACAGCAACAACAACATGTGTTGCAA---G------------------------TGCAGCA---ACCGCAGCAGCAACAACCG------------------------TTAA----------------------------------------------------------------------------------------------------------TGCAG-----------CCG---CAGTCGCCCCATCC---------A----TCAAGTGCGTTTTCTTTTCCCTACACTTT------CACCGAAAC-------------------------------AATCTCTTATT------A---AA---------------C---------------------------------CA-----------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491338:149046-149236 -		CAAT--------------CGCTTCAAC---------------AG-----------------------C---AACAA---CAC---------------------CATCCGGTCTACAGCAACTTTCAG---------CAAC---AGCAGCA------------GCAGCAACAACAACA------------ACAG---------------------------------------------------------------------------------------------------------------------------------GCTGTCCCTGGTCTCAATGAG-------------CCTCGTGTGCCTCC-----CCTGCAAATCCGTTTGCGCGGCA------------------------------------AG------AACCATGTGG--------------------------------------------TG-------GTC------AAGAATACGCGAAAAGATCGAAAGAAGGGACAGAATCA------------------------------------------------------------------
droRho1	scf7180000777865:82788-82945 +		CAGC--------------AAGTGCAGC---------------AA-----------------------C---TCCATCAACCG---CAACAGCAGCAGCAA---CATGTGCTGCAA---------------------------------AC---GCAACA---GCCACAACAGCAACA------------ACCG---TTAA---------------------------------------------------------------------------------------------------------------------TGCAGCCG---CAGTCACCCCATCC-------------ATCAAGTGAGTTTTT-----CATATACTTT------CACCAAAAC-------------------------------AATCGCTTTTT------A---AA---------------C---------------------------------CA-----------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453929:375769-375926 +		CCGC--------------AGCAGCAAT---------------C------TTTCGGCCTCGCCGACAGCAGCAAC---AGCAACGGCAGCAGC---AG------------------------------CAACAACAACAACAACTGCAGCA------------ACAGCAACAACAACA---GCAA----------------C--------------------------------------------------------------------------------------------------------------------------------GGAGTCTCCTCGAA-----G-------TCATTTGTG----C-----CCTGCAAAGTCTG--------CGGC-------------------------------GACAAGGCATC------G---GG---------------C---------------------------------TA-----------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302577:465648-465806 +		CAGC--------------AACACCAGC---------------AA-----------------------C---TGCTGCAGCAA---CAGCTGCCGCAGCAG---CG-------TAGACAAACCTACAAG--------GAATATTTACAGCA------------AAAGCAACAGCAACAGCAAAACAAGCAACCA---CTAAGGATAT-------------------------------------------------------------------------------------------------------------------------------------------------------TCCGCGTCCACTA-----CATTCGACTC------AACTCCA------------------------------------AGGACGGC------G---TA---------------C---------------------------------CG-----------------------------------------------------------------------------------------------------------------
droAna3	scaffold_12916:6235341-6235532 +		CAATTTCCGGTGGATGGCCACCTCAACAGCAACCACTACAA--------------------------C---AGCAGCAGCAA---------------------CAGCCGTTGCCG------CCGCAGC---------------AGCAGCA------------GCAGCACCTGCAACA------------ACAACCAGCAC-AGTATGGAGCACCGCCGACGTCGTCAGCTCCCCAGACCTACCTGAATGGCAACTACCAACAGCAGGTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCACGGGGTTCCAATC--------------------------------------------------------------------------------------
droBip1	scf7180000396568:593923-594155 -		CGATTTCCGGTGGATGGCCACCTCAACAGCAACCACTACAA--------------------------C---AGCAG---CAA---------------------CAGCCGTTGCCG------------------------------CCGCA------------GCAGCACCTGCAACA------------ACAACCAGCAC-AGTATGGAGCACCGCCGACGTCGTCAGCTCCCCAGACTTACCTGAATGGCAACTACCAACAGCAGGTGAA-------------ATCACGGGAATTTTAA---------------------------------------------------------------------------------------------TCT----------------------------------------------------------------------------------------------------------------------------------------TGACCTACAATACTGATTTACTAGACTTTTTTTTGGAATTCCTCCCCTTTG-----------------------------------
dp5	4_group3:7142108-7142309 -		CAAC--------------ATCAACAGC---------------AG-----------------------C---AGCCACAAACA---CATCTGCAGCAACAT---CATCCGGTGTACACAAACTTTCAAC---------------AGCAGCA------------GCAACAACAGCAACA------------GCAA---------------------------------------------------------------------------------------------------------------------------------TCTGTACAAGGTCTCAACGAA-------------CCACGTGTGCCTCC-----CCTGCAGATTCGTTTGCGTGGAA------------------------------------AG------AATCATGTTG--------------------------------------------TA-------GTTAAGAATACGCGCAAGGA------TCGCAAGAAGTTGCAGA----------------------------------------------------------------------
droPer2	scaffold_1:8589347-8589548 -		CAAC--------------ATCAACAGC---------------AG-----------------------C---AGCCACAAACA---CATCTGCAGCAACAT---CATCCGGTGTACACAAACTTTCAAC---------------AGCAGCA------------GCAACAACAGCAACA------------GCAA---------------------------------------------------------------------------------------------------------------------------------TCTGTACAAGGTCTCAACGAA-------------CCACGTGTGCCTCC-----CCTGCAGATTCGTTTGCGTGGAA------------------------------------AG------AATCATGTTG--------------------------------------------TA-------GTTAAGAATACGCGCAAGGA------TCGCAAGAAGTTGCAGA----------------------------------------------------------------------
droWil2	scf2_1100000004511:5776953-5777104 -		CAAC--------------AACTGCAAC---------------AACAAGCATTTAGCTTAGCCGATTCCAGCAAC---AACAACAACAACAGC---AG---------------------------------------------------CAGCAACTCTA---ATAACAGCAACAACG---GCAA----------------C--------------------------------------------------------------------------------------------------------------------------------GGCGTCTCATCAAA-----A-------TCTTTTGTA----C-----CCTGCAAAGTTTG--------CGGT-------------------------------GACAAGGCATC------G---GG---------------C---------------------------------TA-----------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12963:13664416-13664604 -		CAAC--------------AACAGCAGC---------------CT-----------------------C---AGCAACAACAA---CAACAACAGCAG---------------------------------------------------CC------------TCAGCAACAACAACA-------------------------ATATGGCGCTGCGGTGACG---TCCGCTCAGCAGCCCTATGTGAATGGCAACTACCA---GCAGGTGA----------------------------------------------------------------------------------------------GCTTCT-----GAGTCTGATTTTTAAGCACAACG------------------------------------GA------GAACATGTTA--------------------------------------------TA-------GC----------------------------------------------ATCCCAATTTCGAATCG--------CTTCGTTGC-------------------------------
droMoj3	scaffold_6328:2997605-2997741 +		CAGC--------------AGCAGCAGC---------------AG-----------------------C---AACAA---CAACTGCAAATGCAATTG---------------------------------------------------CA------------TCAACAACTGCAGCA------------GCAGTTAGCAT----------------------------------------------------------------------------------------------------------TTCAAATGCAATCC----------------CAACTGGCTACGCCAGTGCAGTCAATGAAGGTTC-----CGTCC-ACTT------CGCTG---C-------------------------------CACAGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15126:6199603-6199807 +		AACA--------------GCCGCCGCC----------GCAGCAG-----------------------CAGCAACAA---CAACAACCGCCGC---AG------------------------------CAGCACCAACAACAACCGCAGCA------------GCAACCACCACAACA---GCAA----------------CAATATGGCGCTCCAACAACG---TCCGCTCAGCAGCCTTTTGTCAATGGCAACTATC---AGCAGGTAAA-------------------------------------------------------------------------------------------------------------------------------AC-------------------------------AGCAAAACATT------G---TGCAATACTAAATTAAAA---------------------------------CA-----------------------------------------ACT----TAA-----------------GCTTACTCTAGAAA-------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CAAC--------------GTCGGCGGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTTACCTCAATGGCAACTACCAGCAGCAGGTGAATAG-ATAGCTTTAACCATGGCAGCTTTAACAAGAATTGGAAAACAATCCCG---------------------CTGCACTCGTCAAATATATGTGTATTC-----CCTTCAACTT------CATTCTGGC-------------------------------GATAGCCTATT------G---GG---------------C---------------------------------TAGTTGATAATAAGAATAGGGTTAGAATCTGAAATGAATTGCAGAATTACGTTACTCTTTTGAACCAATTGGCCACCTTGATAT-------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATT------G---GG---------------C---------------------------------TAGTTGATAATAAGA....................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTACGTTACTCTTTTGAACC.................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTTAGAATCTGA...................................................................................	15	15	0.20	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGGTTAGAATCTGA...................................................................................	16	15	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

CAAC--------------GTCGGCGGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTTACCTCAATGGCAACTACCAGCAGCAGGTGAATAG-ATAGCTTTAACCATGGCAGCTTTAACAAGAATTGGAAGACAATCCCG---------------------CTGCACACGTCAAATATATGTGTATTC-----CCTCCGGCTT------CATTCTGGC-------------------------------AATAGACTATT------G---GG---------------C---------------------------------TAGTTGATAATAAGAATAGGGTTAGAATCTGAAATGAATTGCAGAATTACGTTACTCTTTTGAACCAATTGGCCACCT-------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

CAAC--------------GTCGGCGGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTTACCTCAATGGCAACTACCAGCAGCAGGTGAATAG-ATAGCCTTAACCATGGCAGCTTTGACGAGAATCGGAAGACAATCCGG---------------------TTGCACACGTCAAATATATGTGTATTC-----CCTTCAGCTT------CATTCTGGC-------------------------------AATAGCCTATT------G---AG---------------C---------------------------------TAGTCGATAATAAGAATAGGGTTAGAATCTGAAAAGCATTGCAGAATTACGTTACTCTTTTGAACCAATTGGCCACCTTGATAT-------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................GCTT------CATTCTGGC-------------------------------AATAGCCT...................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AAC--------------GTCGGCGGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTT..........................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AC--------------GTCGGCGGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTTACCTC.....................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TCCCAGCCTTACCTCAATGGCAA.............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TTACCTCAATGGCAACTACCAGCAGCAG................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AGCCTTACCTCAATGGCA..............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................ACCTCAATGGCAACTACCAGCAGCAGT...............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................TACCTCAATGGCAACTACCAGCAGCAG................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................AATCCGG---------------------TTGCACACGTCAAATATATG...............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTTACCTCAATGGCAACT...........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AGACAATCCGG---------------------TTGCACACGTT........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TCAATGGCAACTACCAGCAGCAGT...............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATAAGAATAGGGTTAG..........................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................AGCAGCAGGTGAATAG-ATAG...................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................TGTATTC-----CCTTCAGCTT------CATTC..............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AGACAATCCGG---------------------TTGCACACGT.........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TACCTCAATGGCAACTACCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AAC--------------GTCGGCGGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCT...........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................CAGCTTTGACGAGAATCGGAA..................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------C---------------------------------TAGTCGATAATAAGAATA.................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTTACCTCAA...................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTTACCTCAAT..................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................AGCTTTGACGAGAATCGGAAG.................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................GCAACTACCAGCAGCAGT...............................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CAAC--------------GTCGGCAGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTTACCTCAATGGCAACTACCAACAGCAGGTGAATGGGATAGCTTTATGCATGATAGCCTTAACAAGAATTTGCAGACCATCC-----------------------------------------TGTATAATC-----CGCCCAGCTT------CATCCTGGTCTTCTTGATTTTCACATTTGGATCAAACTGAAGTAGCCCATC------A---AT----------------TTTCATCACAGAATTTATAAATATTATG-------ATTGACAATAAGAATAGGGTTAGAATCTGAAAG------------------------------CCATTGGT---ATTGATATAATTA---ACATACATATTTAAAACTAGTTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCTTACCTCAATGGC...............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0

droYak3

CAAC--------------GTCGGCGGC---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGCCATACCTCAATGGCAACTACCAGCAGCAGGTGAATGGCATAGCTTTATCCATGATAGCTTTAAT-AGAATGGACGAAGCATCC-----------------------------------------TGTAAATTC-----CGGCCAGCTT------CATCCTGGTCTTCTTCAAT--------------AAACTGAAATAGTCCATC------A---AG---------------CTTTTATTATTGAATTTATCAATATTATGATCCCTAATTGACAATAAGAAAAGAGTTAGAATCTGAA-------------------------------TCCATTGGT---ATTGATATAATTAGAAATATAC-----------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

CCGC--------------AGCAGCAAT---------------C------TTTTGGCCTAGCGGACAGCAGCAAC---AACAA---CAACAACAACAACAG------------------------------------CAACGGCAGCAGCA------------GCAACAACAACAACA---GCAA----------------C--------------------------------------------------------------------------------------------------------------------------------GGCGTCTCCTCGAA-----A-------TCATTTGTG----C-----CCTGCAAAGTCTG--------TGGC-------------------------------GACAAGGCATC------G---GG---------------C---------------------------------TA-----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCGC--------------AGCAGCAAT---------------C------TTTTGGCCTAGCCGACAGCAGCAAC---AACAACAGCAACGGC---AG---------------------------------------------------CAACAGCAACA---GCAACAGCAACAACA---CCAA----------------C--------------------------------------------------------------------------------------------------------------------------------GGGGTCTCCTCGAA-----G-------TCATTTGTG----C-----CCTGCAAAGTCTG--------TGGC-------------------------------GACAAGGCATC------G---GG---------------C---------------------------------TA-----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAAC--------------CGCAGCAGC---------------AG-----------------------C---AACAAGACCAA---CAGCAACAGCAACAACAACATGTGTTGCAA---G------------------------TGCAGCA---ACCGCAGCAGCAACAACCG------------------------TTAA----------------------------------------------------------------------------------------------------------TGCAG-----------CCG---CAGTCGCCCCATCC---------A----TCAAGTGCGTTTTCTTTTCCCTACACTTT------CACCGAAAC-------------------------------AATCTCTTATT------A---AA---------------C---------------------------------CA-----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAAT--------------CGCTTCAAC---------------AG-----------------------C---AACAA---CAC---------------------CATCCGGTCTACAGCAACTTTCAG---------CAAC---AGCAGCA------------GCAGCAACAACAACA------------ACAG---------------------------------------------------------------------------------------------------------------------------------GCTGTCCCTGGTCTCAATGAG-------------CCTCGTGTGCCTCC-----CCTGCAAATCCGTTTGCGCGGCA------------------------------------AG------AACCATGTGG--------------------------------------------TG-------GTC------AAGAATACGCGAAAAGATCGAAAGAAGGGACAGAATCA------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAGC--------------AAGTGCAGC---------------AA-----------------------C---TCCATCAACCG---CAACAGCAGCAGCAA---CATGTGCTGCAA---------------------------------AC---GCAACA---GCCACAACAGCAACA------------ACCG---TTAA---------------------------------------------------------------------------------------------------------------------TGCAGCCG---CAGTCACCCCATCC-------------ATCAAGTGAGTTTTT-----CATATACTTT------CACCAAAAC-------------------------------AATCGCTTTTT------A---AA---------------C---------------------------------CA-----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCGC--------------AGCAGCAAT---------------C------TTTCGGCCTCGCCGACAGCAGCAAC---AGCAACGGCAGCAGC---AG------------------------------CAACAACAACAACAACTGCAGCA------------ACAGCAACAACAACA---GCAA----------------C--------------------------------------------------------------------------------------------------------------------------------GGAGTCTCCTCGAA-----G-------TCATTTGTG----C-----CCTGCAAAGTCTG--------CGGC-------------------------------GACAAGGCATC------G---GG---------------C---------------------------------TA-----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAGC--------------AACACCAGC---------------AA-----------------------C---TGCTGCAGCAA---CAGCTGCCGCAGCAG---CG-------TAGACAAACCTACAAG--------GAATATTTACAGCA------------AAAGCAACAGCAACAGCAAAACAAGCAACCA---CTAAGGATAT-------------------------------------------------------------------------------------------------------------------------------------------------------TCCGCGTCCACTA-----CATTCGACTC------AACTCCA------------------------------------AGGACGGC------G---TA---------------C---------------------------------CG-----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAATTTCCGGTGGATGGCCACCTCAACAGCAACCACTACAA--------------------------C---AGCAGCAGCAA---------------------CAGCCGTTGCCG------CCGCAGC---------------AGCAGCA------------GCAGCACCTGCAACA------------ACAACCAGCAC-AGTATGGAGCACCGCCGACGTCGTCAGCTCCCCAGACCTACCTGAATGGCAACTACCAACAGCAGGTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCACGGGGTTCCAATC--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................CGACGTCGTCAGCTCCCCA...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.............................CAACCACTACAA--------------------------C---AGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................AGTATGGAGCACCGCCGACGT............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................ACCTACCTGAATGGCAACTAC.........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................CGTCAGCTCCCCAGACCTACCT......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
CAATTTCCGGTGGATGGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................GCA------------GCAGCACCTGCAACA------------ACAACCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................CGACGTCGTCAGCTCCCCAGA.............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................CAA--------------------------C---AGCAGCAGCAA---------------------CAGCCGTTGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................GCACCGCCGACGTCGTCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...............................................................................................................GCCG------CCGCAGC---------------AGCAGCA------------GCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	12	0.08	1	0	1	0	0	0	0

droBip1

CGATTTCCGGTGGATGGCCACCTCAACAGCAACCACTACAA--------------------------C---AGCAG---CAA---------------------CAGCCGTTGCCG------------------------------CCGCA------------GCAGCACCTGCAACA------------ACAACCAGCAC-AGTATGGAGCACCGCCGACGTCGTCAGCTCCCCAGACTTACCTGAATGGCAACTACCAACAGCAGGTGAA-------------ATCACGGGAATTTTAA---------------------------------------------------------------------------------------------TCT----------------------------------------------------------------------------------------------------------------------------------------TGACCTACAATACTGATTTACTAGACTTTTTTTTGGAATTCCTCCCCTTTG-----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAAC--------------ATCAACAGC---------------AG-----------------------C---AGCCACAAACA---CATCTGCAGCAACAT---CATCCGGTGTACACAAACTTTCAAC---------------AGCAGCA------------GCAACAACAGCAACA------------GCAA---------------------------------------------------------------------------------------------------------------------------------TCTGTACAAGGTCTCAACGAA-------------CCACGTGTGCCTCC-----CCTGCAGATTCGTTTGCGTGGAA------------------------------------AG------AATCATGTTG--------------------------------------------TA-------GTTAAGAATACGCGCAAGGA------TCGCAAGAAGTTGCAGA----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................GGTGTACACAAACTTTCAAC---------------AGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	2
.............................................................................................................................................................................................................................................................................................................................................................................................GATTCGTTTGCGTGGAA------------------------------------AG------AAT.............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................CAGCAACA------------GCAA---------------------------------------------------------------------------------------------------------------------------------TCTGTA..................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................GCAGCAACAT---CATCCGGTGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCGCAAGGA------TCGCAAGAAGTTG..........................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................ATCTGCAGCAACAT---CATCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TCTCAACGAA-------------CCACGTGTGCCT..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.AAC--------------ATCAACAGC---------------AG-----------------------C---AGCCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AA---------------------------------------------------------------------------------------------------------------------------------TCTGTACAAGGTCTCAACG.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TCC-----CCTGCAGATTCGTTTG...................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................ACA------------GCAA---------------------------------------------------------------------------------------------------------------------------------TCTGTACAAGGTCTC.........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CAGATTCGTTTGCGTGGAA------------------------------------AG------AATC............................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
CAAC--------------ATCAACAGC---------------AG-----------------------C---AGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	16	0.19	3	0	3	0	0	0	0	0	0	0	0
CAAC--------------ATCAACAGC---------------AG-----------------------C---AG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	17	0.06	1	0	1	0	0	0	0	0	0	0	0

droPer2

CAAC--------------ATCAACAGC---------------AG-----------------------C---AGCCACAAACA---CATCTGCAGCAACAT---CATCCGGTGTACACAAACTTTCAAC---------------AGCAGCA------------GCAACAACAGCAACA------------GCAA---------------------------------------------------------------------------------------------------------------------------------TCTGTACAAGGTCTCAACGAA-------------CCACGTGTGCCTCC-----CCTGCAGATTCGTTTGCGTGGAA------------------------------------AG------AATCATGTTG--------------------------------------------TA-------GTTAAGAATACGCGCAAGGA------TCGCAAGAAGTTGCAGA----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................GTACACAAACTTTCAAC---------------AGCAGCA------------GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................GCAA---------------------------------------------------------------------------------------------------------------------------------TCTGTACAAGGTCTCAAC......................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0

droWil2

CAAC--------------AACTGCAAC---------------AACAAGCATTTAGCTTAGCCGATTCCAGCAAC---AACAACAACAACAGC---AG---------------------------------------------------CAGCAACTCTA---ATAACAGCAACAACG---GCAA----------------C--------------------------------------------------------------------------------------------------------------------------------GGCGTCTCATCAAA-----A-------TCTTTTGTA----C-----CCTGCAAAGTTTG--------CGGT-------------------------------GACAAGGCATC------G---GG---------------C---------------------------------TA-----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................TCTA---ATAACAGCAACAACG---GCAA----------------C--------------------------------------------------------------------------------------------------------------------------------GGCG.............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
..............................................................................ACAACAACAACAGC---AG---------------------------------------------------CAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
........................................................................AC---AACAACAACAACAGC---AG---------------------------------------------------CAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0

droVir3

CAAC--------------AACAGCAGC---------------CT-----------------------C---AGCAACAACAA---CAACAACAGCAG---------------------------------------------------CC------------TCAGCAACAACAACA-------------------------ATATGGCGCTGCGGTGACG---TCCGCTCAGCAGCCCTATGTGAATGGCAACTACCA---GCAGGTGA----------------------------------------------------------------------------------------------GCTTCT-----GAGTCTGATTTTTAAGCACAACG------------------------------------GA------GAACATGTTA--------------------------------------------TA-------GC----------------------------------------------ATCCCAATTTCGAATCG--------CTTCGTTGC-------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................................................................................................................CTATGTGAATGGCAACTACC........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCAGCCCTATGTGAATGGCA..............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CAACAACA-------------------------ATATGGCGCTGCGGTGAC..............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................AG---------------------------------------------------CC------------TCAGCAACAACAACA-------------------------ATATGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AACAACAA---CAACAACAGCAG---------------------------------------------------CC------------TCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCAGCCCTATGTGAATGGCAACT...........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GTGA----------------------------------------------------------------------------------------------GCTTCT-----GAGTCTGATTTTTAAG...................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AACAGCAGC---------------CT-----------------------C---AGCAACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................CAGCAG---------------------------------------------------CC------------TCAGCAACAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AACAGCAG---------------------------------------------------CC------------TCAGCAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAGCAGC---------------CT-----------------------C---AGCAACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AACAACAGCAG---------------------------------------------------CC------------TCAGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AAC--------------AACAGCAGC---------------CT-----------------------C---AGCAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................C---------------CT-----------------------C---AGCAACAACAA---CAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................C---AGCAACAACAA---CAACAACAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CAACAA---CAACAACAGCAG---------------------------------------------------CC------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AACAACAA---CAACAACAGCAG---------------------------------------------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................CAACAACAA---CAACAACAGCAG---------------------------------------------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ACAACAA---CAACAACAGCAG---------------------------------------------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAGC--------------AGCAGCAGC---------------AG-----------------------C---AACAA---CAACTGCAAATGCAATTG---------------------------------------------------CA------------TCAACAACTGCAGCA------------GCAGTTAGCAT----------------------------------------------------------------------------------------------------------TTCAAATGCAATCC----------------CAACTGGCTACGCCAGTGCAGTCAATGAAGGTTC-----CGTCC-ACTT------CGCTG---C-------------------------------CACAGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................ACTGCAGCA------------GCAGTTAGCAT----------------------------------------------------------------------------------------------------------TTC.....................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.AGC--------------AGCAGCAGC---------------AG-----------------------C---AACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	3	0	0

droGri2

AACA--------------GCCGCCGCC----------GCAGCAG-----------------------CAGCAACAA---CAACAACCGCCGC---AG------------------------------CAGCACCAACAACAACCGCAGCA------------GCAACCACCACAACA---GCAA----------------CAATATGGCGCTCCAACAACG---TCCGCTCAGCAGCCTTTTGTCAATGGCAACTATC---AGCAGGTAAA-------------------------------------------------------------------------------------------------------------------------------AC-------------------------------AGCAAAACATT------G---TGCAATACTAAATTAAAA---------------------------------CA-----------------------------------------ACT----TAA-----------------GCTTACTCTAGAAA-------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................GCCGCC----------GCAGCAG-----------------------CAGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	1	0

dsi_11669

2l:2129877-2130026 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-27.2	-27.2	-27.1