ID:

dsi_11654

 Coordinate:

2l:1147676-1147923 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-41.3 -41.2 -41.1

Flybase annnotation

Antisense to five_prime_UTR [2l_1147555_1148180_+]; Antisense to exon [2l_1147555_1148552_+]

No Repeatable elements found

mature
star
  1. dsi_11654  2l:1147689-1147705 -
  2. 2r:297744-297760 +
  3. 2r:297833-297849 +
  4. 3l:23268340-23268356 +
  5. 3l:23328505-23328521 +
  6. 3l:23505570-23505586 -
  7. node_75371:9221-9237 -
  8. node_91435:1947-1963 +
  9. node_57635:1363-1379 +
  10. node_93067:137-153 -

Sense Strand Reads

CTTCCAATTGCTCATTAGAACCAGTATCTTAACAATGGTGTTATAATACCAAACAATTTATAAAATAAAAAAATCATGCACTTGGTAAAACTAACTAGAAGTTAGTGAAGATATTTTAATGTTAGTTTGTGGCTTAATCACAGTAAACAATTTAGTTTTTCCATATCACTTTATAACGTTAAATTCGGCTTATATTGTAGTTCTCATCGAGGATGCATCGGAGGACCATGGTGTGGTGGTCCATGATGATGGTGGTCGTGGTGCGGAGGTCCATGGTGCGGAGGTCCGTGATGCGGAGGTCCGTGGTGTGGTGGTCCGTGGTGTGGAGGACCGTGGTGTGGTGGCCCA
***********************************************************************************************************(((....((((((((((....((((...........((((...))))...........))))....)))))))))).....))).........(((.(((((.((((((((((((..(((((.((((((....)))).)).)))))..)).))))))....)))).))))).)))...*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...........................................................................................................AAGATATTTTAATGTTAGTTT............................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................GTCCGTGATGCCGAGG................................................. 16 1 2 0.50 1 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................GTGTGGAGGATCGTACTGTG........ 20 3 3 0.33 1 0 0 1 0 0 0
..................................................................................................................................................................................................................................................ATGATGATGCCGGTCGCGGTGC.................................................................................... 22 3 5 0.20 1 0 0 0 1 0 0
................................................................................................................................................................................................................................................................................................TGATGCGGAGGTCAGTGGAGA....................................... 21 3 6 0.17 1 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................GGACCGTGATGCCGAGGT................................................ 18 2 6 0.17 1 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................GTCCATGGTGCGGAGGT............................................................... 17 0 10 0.10 1 0 1 0 0 0 0
...............TAGAACAAGTATCTT.............................................................................................................................................................................................................................................................................................................................. 15 1 15 0.07 1 0 1 0 0 0 0
..............................AACAATGATGTTATA............................................................................................................................................................................................................................................................................................................... 15 1 19 0.05 1 0 0 0 0 0 1
..........................................................................................................................................................................................GGGTTTTATTGTAGTTC................................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

############################################################################################################################################################################################################################################################################################################################################################
GAAGGTTAACGAGTAATCTTGGTCATAGAATTGTTACCACAATATTATGGTTTGTTAAATATTTTATTTTTTTAGTACGTGAACCATTTTGATTGATCTTCAATCACTTCTATAAAATTACAATCAAACACCGAATTAGTGTCATTTGTTAAATCAAAAAGGTATAGTGAAATATTGCAATTTAAGCCGAATATAACATCAAGAGTAGCTCCTACGTAGCCTCCTGGTACCACACCACCAGGTACTACTACCACCAGCACCACGCCTCCAGGTACCACGCCTCCAGGCACTACGCCTCCAGGCACCACACCACCAGGCACCACACCTCCTGGCACCACACCACCGGGT
***************************************************************(((....((((((((((....((((...........((((...))))...........))))....)))))))))).....))).........(((.(((((.((((((((((((..(((((.((((((....)))).)).)))))..)).))))))....)))).))))).)))...*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 M025
embryo
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
...........................................................................................................................................TGTCATTTGTTAAATCAA............................................................................................................................................................................................... 18 0 1 8.00 8 0 5 3 0 0 0 0 0
.....................GTCATAGAATTGTTACCAC.................................................................................................................................................................................................................................................................................................................... 19 0 1 3.00 3 0 3 0 0 0 0 0 0
..............................................................................................................................................................................................................................................CAGGTACTACTACCACCAG........................................................................................... 19 0 1 3.00 3 0 3 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TCCAGGCACTACGCCTCCAGG.............................................. 21 0 1 3.00 3 0 3 0 0 0 0 0 0
..............................................................................................................................................................AAGGTATAGTGAAATATTGCAATTT..................................................................................................................................................................... 25 0 1 2.00 2 0 0 2 0 0 0 0 0
............................................................................................TTGATCTTCAATCACTTCTAT........................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................................................................CGAATTAGTGTCATTTGTTAAATC................................................................................................................................................................................................. 24 0 1 2.00 2 1 1 0 0 0 0 0 0
....................................................................................................CAATCACTTCTATAAAATTA.................................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0
................................................................................................................................CACCGAATTAGTGTCATTTGTTA..................................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................................................................................CGTCATTTGTTAAATCAA............................................................................................................................................................................................... 18 1 1 2.00 2 0 2 0 0 0 0 0 0
..................................................................................ACCATTTTGATTGATCTTC....................................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0
....................................................................................................................................................TTAAATCAAAAAGGTATAGTGAAATA.............................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0
.......................................................................................................TCACTTCTATAAAATTACAATCAAA............................................................................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................................................................CGAATTAGTGTCATTTGTTAAATCAA............................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................CCGAATATAACATCAAGAGTAGC........................................................................................................................................... 23 0 1 2.00 2 0 0 2 0 0 0 0 0
...........................................................................................................................................TGTCATTTGTTAAATCAAAAAGGTATAG..................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................CCGAATATAACATCAAGAGTAGCT.......................................................................................................................................... 24 0 1 2.00 2 0 1 1 0 0 0 0 0
.........................................................................................................................................................TCAAAAAGGTATAGTGAAATA.............................................................................................................................................................................. 21 0 1 2.00 2 0 1 1 0 0 0 0 0
..................................................................................................................................CCGAATTAGTGTCATTTGTTAAATC................................................................................................................................................................................................. 25 0 1 2.00 2 0 2 0 0 0 0 0 0
.....................................................................................................................................................TAAATCAAAAAGGTATAGTGAAAT............................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................TAAGCCGAATATAACATCAAGAGTAGC........................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................TGCAATTTAAGCCGAATATAACATCAA.................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................CAGGCACTACGCCTCCAGGCAC........................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................................TGTTAAATCAAAAAGGTATAGTGAAA................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCAAGAGTAGCTCCTACGTAGCCTC............................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................AGTAGCTCCTACGTAGCCTC............................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................GTCATTTGTTAAATCAAAAAGGTATA...................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................ATTGATCTTCAATCACTTC.............................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TTGCAATTTAAGCCGAATATAACATCAA.................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................TGTTAAATCAAAAAGGTATAGTGAAATA.............................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................CCACGCCTCCAGGCACTACGC..................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................CACCACCCCACCAGGCAC............................ 18 1 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................AAAGGTATAGTGAAATATTGCAATT...................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................TGATCTTCAATCACTTCTATA.......................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................AGGCACCACACCTCCTGGCACCACACCA...... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................AATCACTTCTATAAAATTACA.................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................TCACTTCTATAAAATTACA.................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CCAGGTACCACGCCTCCAGGCACTACGCC.................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................TCAAGAGTAGCTCCTACGTAGCCTCCTGG......................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................AGGTATAGTGAAATATTGCAATTTAAG.................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................AAAAGGTATAGTGAAATATTGCAATTTA.................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................CAGGCACTACGCCTCCAG............................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................ATCAAACACCGAATTAGTGTCATTTG........................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................CACCGAATTAGTGTCATTTGTTAAATC................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................AAAAAGGTATAGTGAAATA.............................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................TTGTTAAATCAAAAAGGTATAT..................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................TGAAATATTGCAATTTAAGCCGAA............................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................CACGCCTCCAGGCACTACGCCTC.................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................AGCCGAATATAACATCAAGAGTAGC........................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................AATCACTTCTATAAAATTACAATCAAAC........................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................GTCATAGAATTGTTACCACAATAT............................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................CACCGAATTAGTGTCATTTGTTAAA................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................CCAGGCACTACGCCTCCAGG.............................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................TCCAGGCACCACACCACCAG................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................AAAAAGGTATAGTGAAATATTGCA......................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................TTGATCTTCAATCACTTCTATAAAATT..................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................TTGTTAAATCAAAAAGGTA........................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................TCCAGGTACCACGCCTCCAGGCACTA........................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................ACATCAAGAGTAGCTCCTACGTAGCCTCC............................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................AAAAAGGTATAGTGAAATATT............................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................CATCAAGAGTAGCTCCTACG.................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................CAGGTACTACTACCACCAGCA......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................CAGGTACTACTACCACCAGCAC........................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................CTCCAGGCACTACGCCTCCAGGCACCAC........................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................TGGTACCACACCACCAGGTA........................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................AGTAGCTCCTACGTAGCCTCCTG.......................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTCCTACGTAGCCTCCTGGTACCACAC................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
........ACGAGTAATCTTGGTCATAGAAT............................................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................CAATCACTTCTATAAAATT..................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................AATATTGCAATTTAAGCCGA.............................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................CCGAATATAACATCAAGAG............................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................AATCAAACACCGAATTAGTGTCATTTGTT...................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TCCAGGCACTACGCCTCCAGGCACCAC........................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................TGATCTTCAATCACTTCTATAAAATTAC................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................AAAGGTATAGTGAAATATTGCA......................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TAACATCAAGAGTAGCTACTACGT................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................TACAATCAAACACCGAATTA.................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................TTGATCTTCTATCACTTCTATAAA........................................................................................................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................TCACTTCTATAAAATTACAATCAA............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................AGAGTAGCTCCTACGTAGCCTC............................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................TTATGGTTTGTTAAATATTTT........................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................GTGTCATTTGTTAAATCAA............................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................CAAAAAGGTATAGTGAAATA.............................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................ATTAGTGTCATTTGTTAAATCAAAAAGG.......................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................TTATGGTTTGTTAAATATTTTA.......................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................CATCAAGAGTAGCTCCTACGTAGCCTCCT........................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................TATAACATCAAGAGTAGCTCCTA...................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................ATCAAAAAGGTATAGTGAAATATTG........................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................TCAAAAAGGTATAGTGAA................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................CAGGTACCACGCCTCCAGGCACTACGCC.................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................CAATCAAACACCGAATTAGTGTCAT........................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................TGTTAAATCAAAAAGGTATAGTG................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TGCAATTTAAGCCGAATATAACATCAAG................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................CCGAATATAACATCAAGA................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................AAACACCGAATTAGTGTCATTTGTT...................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................TACCACGCCTCCAGGCACTACGCCTC.................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................AAAAAGGTATAGTGAAATATTG........................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................TTAGTGTCATTTGTTAAATCA................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................CGAATTAGTGTCATTTGTTAAATCA................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................TTAAATCAAAAAGGTATAG..................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................ATGGTTTGTTAAATATTTTATT........................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................ACACCACCAGGTACTACTA.................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................GTATAGTGAAATATTGCAATTTAAG.................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................CATCAAGAGTAGCTCCTACGT................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................CGAATTAGTGTCATTTGTTA..................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................TAGTGAAATATTGCAATTTAAGCCGA.............................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................TAAGCCGAATATAACATCAAG................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................ATCAAAAAGGTATAGTGAAATATTGCAA........................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................AGGCACCACACCTCCTGGCACCACAC........ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................TGGTTTGTTAAATATTTTAT......................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................ATATTATGGTTTGTTAAATATT............................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................AACCATTTTGATTGATCTTCAAT.................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................TTACAATCAAACACCGAATTAGTGTCAT........................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTAAGCCGAATATAACATCAAGAG............................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................AGGTATAGTGAAATATTGCA......................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................AAAGGTATAGTGAAATATTG........................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................ATTAGTGTCATTTGTTAAA................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................AGGTATAGTGAAATATTG........................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................CAGGTACCACGCCTCCAGGCA........................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................CCATTTTGATTGATCTTCA...................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................TTGATTGATCTTCCATCACTTC.............................................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................ACCGAATTAGTGTCATTTGTTAA.................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................AGGCACTACGCCTCCAGGCACCA......................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................GCACCACACCACCAGGCAC............................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................ATCTTCAATCACTTCTATAAA........................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................CACCAAATTAGTGTCATTTGTTAAA................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................AAGGTATAGTGAAATATTGC.......................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................................................................................................CCGAATTAGTGTCATTTGTT...................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................CAGGCACTACGCCTCCAGGC............................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CCAGGTACCACGCCTCCAGGCACTACGC..................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................AAGGTATAGTGAAATATTGCAATTTAAG.................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TACGTAGCCTCCTGGTACCACACG................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................ACATCAAGAGTAGCTCCTACGTAGC................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................TTGATCTTCAATCACTTCTATAAAA....................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................AAAGGTATAGTGAAATATTGCAATTTA.................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................GTCATAGAATTGTTACCACA................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................GAATTGTTACCACAATATT.............................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................AAAAGGTATAGTGAAATATTGCAAT....................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................GAATTAGTGTCATTTGTTA..................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................TTGATCTTCCATTACTTCTA............................................................................................................................................................................................................................................ 20 2 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCAAGACAAGCTCCGACGT................................................................................................................................... 19 3 20 0.35 7 0 0 0 0 0 0 7 0
..............................................................................TTGAACCATTTTAATTGATCTTT....................................................................................................................................................................................................................................................... 23 3 3 0.33 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................GGCACTACGGCTCCA................................................ 15 1 7 0.29 2 0 0 0 0 2 0 0 0
.................................................................................................................................................................................................................................................................................ACCACGCCTCCTGGCCCTAG....................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................AGACCGAATATAGCATCAAGA................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................ACCAGGGTCCACACCTC.................... 17 2 10 0.10 1 0 0 0 0 1 0 0 0
............................................................................................................................................GTCATATGTTAACTCAAA.............................................................................................................................................................................................. 18 2 20 0.10 2 0 0 0 0 0 0 0 2
..............................................................................................................................................................................................................................................................................GGTACCACGCCTCCA............................................................... 15 0 10 0.10 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................AAAAAGGAAGAGTGAAATA.............................................................................................................................................................................. 19 2 19 0.05 1 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:1147626-1147973 - dsi_11654 CTTCCAATTGCTCATTAGAACCAGTATCTTAACAATGGTG-------TTA--------------TAA-------------------------------------------------------------TACCAAACAATTTATAAAATAAAAAAATCATGCACTTGGTAAAACTAACTAGAAGTTAGTGAAGAT-----------ATTTTAATGTTAGTTTGTGGCTTAATCACA----------GTAAACAA-------------------TTT-----------------A-GTTTTTCCATATCACTTTATA----ACGTTA-AATT-CGGC----------------TTATA-----TTGTAGTTCTCATCGAGGATGCATCGGAGGACCA------------------T----------------GGTGTGGTGGTCCATG---------------------------------------ATGATGGTGGTC---GTGGTGCGGAGGTCCATG-------------------------------GTGCGGAGGTCCGTGATGCGGAGGTCCGTGGTGTGGTGGTCCGTGG----TGTGGAGGACCGTGGTGT-----GGTGGCCCA
droSec2 scaffold_14:1160082-1160350 - CTTCCAATTGCTCATTAGAACCAGTATCTTAATAATGGTG-------TTA--------------TAA-------------------------------------------------------------TATCATGCAATTTATAAAATAAAAACATCATGCACTT---GAAACTAACTAGAAGTTAGTGAAGAT-----------ATTTTAATGTTAGTTTGTGGCTTAATCACA----------GTTAATAA-------------------TTT-----------------T-GTTTTTTCATATCACTTTATA----TCGTTA-AATT-CGGC----------------TTAGA-----TTGTAGTTCTCATCGAGGATGCATTGGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTGGTGTGGTGGTCCGTGG----TGTGGAGGACCGTGGTGT-----GGTGGTTCG
dm3 chr2L:1200308-1200660 - CTTCTAATTGCTTATTAGAATCAGTATCTTTATAATGGTG-------TTA--------------TAA-------------------------------------------------------------AATTAAACAATTTCTAAAATAAAAACATTTTGCTCTTGGTGAAACTAACTAGAAGTTAGTGAAGAT-----------ATTTTAATGTTAGTTTGTGGCTTAATCACA----------GTTAACGA-------------------TTA-----------------A-GTTTTTCCATATCAGTTTATA----ACGTTA-AATT-CGGC----------------TTATATTGTATTATAGTTCTCATCGAGGATGCATTGGAGGACCG------------------T----------------GGTGTGGTGGTCCATG---------------------------------------ATGATGGTGGTC---GTGGTGCGGAGGTCCATG-------------------------------GTGCGGCGGTCCGTGGTGTGGTGGCCCGTGATGCGGTGGCCCGTGG----TGTGGAGGACCATGGTGC-----GGTGGCCCA
droEre2 scaffold_4929:1246950-1247225 - AAAACAATCACT------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGGGTGACTAACT-GAAGTCAGTTGACAT-----------ATT-TAGTAAAAGTTTTGGTTTTAATCACA----------TACAAGTG-------------------TAC-------------------ATTTATTGCTATCACATTATA----TTGACC-GATC-TCGA----------------TTACA-----GCTCAGTTCTCATCGCGGATGCATTGGAGGTCCT-------------------CGGGCCACGTAACC------------------------------------------TGGCC------CATGTGGATAC------------------GGACCATGCGGCGGCGGAGGATGGTAGCCGGAAATGTTT-----------------C-----------CGTGAGGCGGCTCGTAATAAATCGGATGCACTGGCGTGTGGAACGGGG----G
droYak3 2L:1181400-1181804 - CGTATAATTGTTAACCAG------------------AGTG-------TTAACAAAGAGAAGTCATAAAATAAAATCCAATGTAAAATATCAAGAAGAGGTATGCTCCTTAAACAAATTGCTACATTTTTAACCAACAATTTACAATATAAAAACAGTTTGCTTTTGAGGTCACTAACTAAAAGTCAGAGAAGAT-----------ATTTTAATGTTAATTCATGGCTTAATCACA----------GTTAACAA-------------------TTT-----------------A-ATTTGTCCATAACACTTTATA----TCGCTA-AATT-CGGT----------------TTATA-----TTTTAGTGCTCAGCGAGGATGCATCGGAGGTCCA------------------T----------------GGTGTGGAGGTCCATG---------------------------------------GTGGTGGTGGTC---GTGGTGTGGTGGTCCATG-------------------------------GTGCGGAGGACCATGATGCGGGGGTCCGTGATGGGGAGGTCCGTGG----TGTGGAGGACCATGGTGT-----GGAGGTCCA
droEug1 scf7180000407252:630937-631093 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCTCAGCGAGGGTGCATTGGGGGACCG-------------------GGAGGATGGTGATG------------------------------------------ATGGT------CATGGTGTGGGGGACC---ATGATGCGGAGGTCCGTG-------------------------------GTGAGGAGGTCCATGATGCGGGGGTCCATGATGCGGGGGTCCGTGG----TGTGGAGGACCATGGTGC-----GGAGGCCCG
droBia1 scf7180000302188:649912-650192 + ATCAATACATCTC--------------------------------------------------------------------------------------------------------------------------------------------------AAATTTAAGTAAAATAAATAAAAGTAAACAAAAATCTGGGCGACGTATTTTTAGAATAGATTGTT--------------------------------------------------A-------------------ATTTATT--TATCACATTATA----CTTTAGAAGTC-CACT----------------TTATA-----GTTCAGTCCTTATCGAGGGTGCATTGGAGGTCCA-------------------GGCGCCACGTATCC------------------------------------------TTGATCAGGCGGGTATGGATAA------------------GGACCGTGTGGTGGCGGTGGGCTGAAGCCGGAACTATT-----------------TCCGGGGTTCCC--GGGAGTTGGTTCGTAGTAAATGGGATGCACCGGCGTCT-----GGAAA----
droTak1 scf7180000415264:153483-153802 - TTTTGAACTGCTCACGAGAAATAACA--------------------------------------------------------------------------------------------------------CAGAACTATT-----------TA--------------TTTTTGTATTTGATTTATTT--TAGGT-----------ATTTTTTTGT---TTTGTTGTTTGACCACGTCATAATATTTTTGT--------GTAGACATTAAAATTAA-------------------ATTTCTTAGTTTGA--TAAAT----AACTATCGG-ATCCA-----------------TATCG-----CTTTAGTTCTTAGCGAGGGTGCATCGGAGGTCCG-------------------GGAGGGTGGTGATG------------------------------------------GTGGT------CATGATGAGGAGGACC---GTGGTGCGGGGGTCCGTG-------------------------------GTGCGGAGGTCCATGATGCGGAGGTCCGTGGTGCGGAGGACCGTGA----TGCGGAGGTCCGTGATGG-----GGAGGTCCA
droEle1 scf7180000491273:2272554-2272848 + TAA--------------------------------------------------------------------------------------------------------------------------------------GGTCAGAAAATCT----ATTATAATTTTAGTTAGAATATTTGGTATTCCATAAATAT-----------TTTTTGTTTTTATTTTTTTGT--------------------------------A--------TTAAATGC-------------------ACTTATAAATCTAA--TAAGT-CTGTTGTTA-ATTC-CAGT----------------TAATG-----GTTCAGTCCTTATCGAGGTTGAATTAGGGATCCT-------------------GGCGCAGGATCACA------------TCCACA----------------TCC-----AGGACGAGGTGGATAGGGATAT------------------GGACCATGTGGCGGCGGCGGGGCGTAGCCGGATCCATTT-----------------CCTGG---T--TGGGGAGTAGGCTCGTAATAAATGGGATGCACCGGTGTCT-----GGAA-----
droRho1 scf7180000763720:497-855 + CACTCAATAATTGTTGAAAAAAATTATTTGGATAACAACGAACACCCTAT--------------TAG-------------------------------------------------------------TTTCTTACACGTCAGAAAATAAATAT--TTTACTT-T---AAAATTTATTACAAAATTTTAAAGAT-----------TTTTTTTGTTTAATTTT------------A----------TATAAGGTGTTTTA--------CAAAATGC-------------------ACTTATTGTTATAA--TCATT----ATGTTTAAG-TCCAAC----------------TTCAG-----GTTAATTTTCTAGCGAGGTTGAATAAGAGATCCT-------------------GGTGCTCCGGATCC------------------------------------------AGAACCAGGTGGATACGGATAT------------------GGACCATGTGGTGGCGGTGGGTGGTAGCCGGATCCATTT-----------------CCTGG---C--TGGGGAGTGGGTTCGTAATAAATGGGAGGCACCGCTTGCTGGAATGGTGGG--C
droFic1 scf7180000454155:423018-423266 + TTTTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATTTTGTGGTA----------------------------------------TACTGTGAACCACACAATTTAATTTTGGCACTTTTGTTTAACATTTTTA---CTATAG--GTA-AGTTTTTAGTTGTATAAATATTTAA-----ATTCAATCCTTATCGGGGATGCATCGGAGGTCCG-------------------GGAGGGTGGTGATG------------------------------------------GTGGT---------------------C---ATGGTGCGGGGGACCGTG-------------------------------ATGCGGAGGTCCGTGGTGCGGTGGACCATGGTGCGGGGGACCGTGG----TGGGGTGGACCGTGGTGC-----GGAGGTCCG
droKik1 scf7180000302405:453681-453828 + TATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATCCTTAGCGAGGATGCATTGGAGGTCCG-------------------GGCGGGTGGTGATG------------------------------------------GTGGT---------------------C---ATGGTGCGGAGGGCCGTG-------------------------------GTGCGGAGGACCGTGGTGCGGCGGGCCGTGGTGCGGAGGACCGTGA----TGCGGAGGACCGTGGTGC-----GGAGGCCCG
droAna3 scaffold_12916:4674794-4674965 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCTTAGCGAGGATGCATTGGAGGTCCATGATGGTGAGGGTCATGGT----------------GGTGCGGAGGTCCATG---------------------------------------ATGGTGATGGTCATGGTGGTGCGGAGGTCCATG-------------------------------GTGTGGCGGCCCATGGTGCGGAGGTCCGTGGTGCGGAGGTCCATGG----TGCGGAGGACCATGGTGC-----GGAGGTCCA
droBip1 scf7180000396737:89549-89687 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCTTAGCGAGGATGCATTGGAGGTCCATGATGGTGAG----------------------------------GGTCATG------------------------------------------------------GTGGTGCGGAGGTCCATG-------------------------------GTGTGGAGGACCGTGGTGCGGGGGTCCATGGTGGGGAGGTCCATGG----TGCGGGGGTCCATGGTGT-----GGAGGTCCA
dp5 4_group3:9661173-9661340 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAACGAGGATGCATGGGAGGTCCATGATGGTGGGCGGGACAAT----------------GGTGCGGAGGTCCGTG---------------------------------------ATGCGGTCCGTGGCAGTGGCAGGGTGGTCCATG-------------------------------GTGCGGCGGCCCGTGGTGCGGCGGCCCGTGGTGCGGGGGACCGTGA----TGCGGGGGCCCACAGTGA-----GGGGGCCCG
droPer2 scaffold_8:859729-859938 + TTTAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT---TTGTGT--------------------------------------------------------------------------------------TTTA----TTAAC----TA-AAGG----------------TTCCG-----GGTTAAT-CCTAACGAGGATGCATGGGAGGTCCATGATGGTGGGCGGGACAAT----------------GGTGCGGAGGTCCGTG---------------------------------------ATGCGGTCCGTGGCAGTGGCAGGGTGGCCCATG-------------------------------GTGCGGCGGCCCGTGGTGCGGGGGCCCGTGATGCGGGGGCCCACAG----TGAGGGGGCCCGTGGTGA-----GGGGTCCCG
droWil2 scf2_1100000004521:2807015-2807165 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGCGGATGCATGGGAGGACCA-------------------TGATGATGGTGTGGAG---------GTCCATG---------------------------------------GTGGGGAGGTCC---ATGATGGGGAGGGCCGTG-------------------------------ATGGGGAGGACCATGATGCGGGGGTCCGTGGTGCGGCGGTCCGTGA----TGGGGAGGCCCGTGATGG-----GAAGGTCCG
droMoj3 scaffold_6680:16587767-16587884 + AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-------------------------------------------------GATGTGGTGGTCCGTGATGATGATGATGCTCAACGTGGCCATG------ATGATGATCATAG------------------TGGCCATG----------------------------------------------ATGCGGGGGTCCGTGATGCGGTGGCCCGTGA----TGCGGTGGGCCGTGATGA--------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTTCCAATTGCTCATTAGAACCAGTATCTTAACAATGGTG-------TTA--------------TAA-------------------------------------------------------------TACCAAACAATTTATAAAATAAAAAAATCATGCACTTGGTAAAACTAACTAGAAGTTAGTGAAGAT-----------ATTTTAATGTTAGTTTGTGGCTTAATCACA----------GTAAACAA-------------------TTT-----------------A-GTTTTTCCATATCACTTTATA----ACGTTA-AATT-CGGC----------------TTATA-----TTGTAGTTCTCATCGAGGATGCATCGGAGGACCA------------------T----------------GGTGTGGTGGTCCATG---------------------------------------ATGATGGTGGTC---GTGGTGCGGAGGTCCATG-------------------------------GTGCGGAGGTCCGTGATGCGGAGGTCCGTGGTGTGGTGGTCCGTGG----TGTGGAGGACCGTGGTGT-----GGTGGCCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................AAGAT-----------ATTTTAATGTTAGTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATG-------------------------------GTGCGGAGGT........................................................................17100.10100000000001000000
droSec2
CTTCCAATTGCTCATTAGAACCAGTATCTTAATAATGGTG-------TTA--------------TAA-------------------------------------------------------------TATCATGCAATTTATAAAATAAAAACATCATGCACTT---GAAACTAACTAGAAGTTAGTGAAGAT-----------ATTTTAATGTTAGTTTGTGGCTTAATCACA----------GTTAATAA-------------------TTT-----------------T-GTTTTTTCATATCACTTTATA----TCGTTA-AATT-CGGC----------------TTAGA-----TTGTAGTTCTCATCGAGGATGCATTGGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTGGTGTGGTGGTCCGTGG----TGTGGAGGACCGTGGTGT-----GGTGGTTCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CTTCTAATTGCTTATTAGAATCAGTATCTTTATAATGGTG-------TTA--------------TAA-------------------------------------------------------------AATTAAACAATTTCTAAAATAAAAACATTTTGCTCTTGGTGAAACTAACTAGAAGTTAGTGAAGAT-----------ATTTTAATGTTAGTTTGTGGCTTAATCACA----------GTTAACGA-------------------TTA-----------------A-GTTTTTCCATATCAGTTTATA----ACGTTA-AATT-CGGC----------------TTATATTGTATTATAGTTCTCATCGAGGATGCATTGGAGGACCG------------------T----------------GGTGTGGTGGTCCATG---------------------------------------ATGATGGTGGTC---GTGGTGCGGAGGTCCATG-------------------------------GTGCGGCGGTCCGTGGTGTGGTGGCCCGTGATGCGGTGGCCCGTGG----TGTGGAGGACCATGGTGC-----GGTGGCCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGTGGCCCGTGG----TGTGG...........................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CATG---------------------------------------ATGATGGTGGTC---GTGGT..............................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCGGTCCGTGGTGTGGT............................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGATGCGGTGGCCCGTGG----................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG-------------------------------GTGCGGCGGTCCGTGGTG................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................GAGGACCG------------------T----------------GGTGTGGTGGTC.............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CG------------------T----------------GGTGTGGTGGTCCATG---------------------------------------..................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGGTGTGGTGGCCCGTG....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................CATTGGAGGACCG------------------T----------------GGTGTGG..................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.................................................................................................................................................................................................T-----------ATTTTAATGTTAGTTTGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG---------------------------------------ATGATGGTGGTC---GTGGTG.............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCCCGTGG----TGTGGAGGA.......................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCGGTCCGTGGTGTGGTG...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................ATCGAGGATGCATTGGAGGACAT------------------C----------------.........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCATG---------------------------------------ATGATGGTGGTC---GT.................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGGTC---GTGGTGCGGAGG.......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CGAGGATGCATTGGAGGACCG------------------A----------------TC.......................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GGATGCATTGGAGGACCG------------------T----------------GG.......................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGGTGGTC---GTGGTGCGG..........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TCGAGGATGCATTGGAGGACC.............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCGGTGGCCCGTGG----TGTG............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................CTTGGTGAAACTAACTAGAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGGTC---GTGGTGCGGAG........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................TAGTGAAGAT-----------ATTTTAATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................G------------------T----------------GGTGTGGTGGTCCATG---------------------------------------ATG...............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGACCG------------------T----------------GGTGTG...................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................ATGCATTGGAGGACCG------------------T----------------GGTGT....................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCCGTGATGCGGTGG...........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTC---GTGGTGCGGAGGTCC....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
droEre2
AAAACAATCACT------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGGGTGACTAACT-GAAGTCAGTTGACAT-----------ATT-TAGTAAAAGTTTTGGTTTTAATCACA----------TACAAGTG-------------------TAC-------------------ATTTATTGCTATCACATTATA----TTGACC-GATC-TCGA----------------TTACA-----GCTCAGTTCTCATCGCGGATGCATTGGAGGTCCT-------------------CGGGCCACGTAACC------------------------------------------TGGCC------CATGTGGATAC------------------GGACCATGCGGCGGCGGAGGATGGTAGCCGGAAATGTTT-----------------C-----------CGTGAGGCGGCTCGTAATAAATCGGATGCACTGGCGTGTGGAACGGGG----GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CGTATAATTGTTAACCAG------------------AGTG-------TTAACAAAGAGAAGTCATAAAATAAAATCCAATGTAAAATATCAAGAAGAGGTATGCTCCTTAAACAAATTGCTACATTTTTAACCAACAATTTACAATATAAAAACAGTTTGCTTTTGAGGTCACTAACTAAAAGTCAGAGAAGAT-----------ATTTTAATGTTAATTCATGGCTTAATCACA----------GTTAACAA-------------------TTT-----------------A-ATTTGTCCATAACACTTTATA----TCGCTA-AATT-CGGT----------------TTATA-----TTTTAGTGCTCAGCGAGGATGCATCGGAGGTCCA------------------T----------------GGTGTGGAGGTCCATG---------------------------------------GTGGTGGTGGTC---GTGGTGTGGTGGTCCATG-------------------------------GTGCGGAGGACCATGATGCGGGGGTCCGTGATGGGGAGGTCCGTGG----TGTGGAGGACCATGGTGT-----GGAGGTCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCTCAGCGAGGGTGCATTGGGGGACCG-------------------GGAGGATGGTGATG------------------------------------------ATGGT------CATGGTGTGGGGGACC---ATGATGCGGAGGTCCGTG-------------------------------GTGAGGAGGTCCATGATGCGGGGGTCCATGATGCGGGGGTCCGTGG----TGTGGAGGACCATGGTGC-----GGAGGCCCGSizeHit CountTotal NormTotal
No Reads
droBia1
ATCAATACATCTC--------------------------------------------------------------------------------------------------------------------------------------------------AAATTTAAGTAAAATAAATAAAAGTAAACAAAAATCTGGGCGACGTATTTTTAGAATAGATTGTT--------------------------------------------------A-------------------ATTTATT--TATCACATTATA----CTTTAGAAGTC-CACT----------------TTATA-----GTTCAGTCCTTATCGAGGGTGCATTGGAGGTCCA-------------------GGCGCCACGTATCC------------------------------------------TTGATCAGGCGGGTATGGATAA------------------GGACCGTGTGGTGGCGGTGGGCTGAAGCCGGAACTATT-----------------TCCGGGGTTCCC--GGGAGTTGGTTCGTAGTAAATGGGATGCACCGGCGTCT-----GGAAA----SizeHit CountTotal NormTotal
No Reads
droTak1
TTTTGAACTGCTCACGAGAAATAACA--------------------------------------------------------------------------------------------------------CAGAACTATT-----------TA--------------TTTTTGTATTTGATTTATTT--TAGGT-----------ATTTTTTTGT---TTTGTTGTTTGACCACGTCATAATATTTTTGT--------GTAGACATTAAAATTAA-------------------ATTTCTTAGTTTGA--TAAAT----AACTATCGG-ATCCA-----------------TATCG-----CTTTAGTTCTTAGCGAGGGTGCATCGGAGGTCCG-------------------GGAGGGTGGTGATG------------------------------------------GTGGT------CATGATGAGGAGGACC---GTGGTGCGGGGGTCCGTG-------------------------------GTGCGGAGGTCCATGATGCGGAGGTCCGTGGTGCGGAGGACCGTGA----TGCGGAGGTCCGTGATGG-----GGAGGTCCASizeHit CountTotal NormTotal
No Reads
droEle1
TAA--------------------------------------------------------------------------------------------------------------------------------------GGTCAGAAAATCT----ATTATAATTTTAGTTAGAATATTTGGTATTCCATAAATAT-----------TTTTTGTTTTTATTTTTTTGT--------------------------------A--------TTAAATGC-------------------ACTTATAAATCTAA--TAAGT-CTGTTGTTA-ATTC-CAGT----------------TAATG-----GTTCAGTCCTTATCGAGGTTGAATTAGGGATCCT-------------------GGCGCAGGATCACA------------TCCACA----------------TCC-----AGGACGAGGTGGATAGGGATAT------------------GGACCATGTGGCGGCGGCGGGGCGTAGCCGGATCCATTT-----------------CCTGG---T--TGGGGAGTAGGCTCGTAATAAATGGGATGCACCGGTGTCT-----GGAA-----SizeHit CountTotal NormTotal
No Reads
droRho1
CACTCAATAATTGTTGAAAAAAATTATTTGGATAACAACGAACACCCTAT--------------TAG-------------------------------------------------------------TTTCTTACACGTCAGAAAATAAATAT--TTTACTT-T---AAAATTTATTACAAAATTTTAAAGAT-----------TTTTTTTGTTTAATTTT------------A----------TATAAGGTGTTTTA--------CAAAATGC-------------------ACTTATTGTTATAA--TCATT----ATGTTTAAG-TCCAAC----------------TTCAG-----GTTAATTTTCTAGCGAGGTTGAATAAGAGATCCT-------------------GGTGCTCCGGATCC------------------------------------------AGAACCAGGTGGATACGGATAT------------------GGACCATGTGGTGGCGGTGGGTGGTAGCCGGATCCATTT-----------------CCTGG---C--TGGGGAGTGGGTTCGTAATAAATGGGAGGCACCGCTTGCTGGAATGGTGGG--CSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATTTTGTGGTA----------------------------------------TACTGTGAACCACACAATTTAATTTTGGCACTTTTGTTTAACATTTTTA---CTATAG--GTA-AGTTTTTAGTTGTATAAATATTTAA-----ATTCAATCCTTATCGGGGATGCATCGGAGGTCCG-------------------GGAGGGTGGTGATG------------------------------------------GTGGT---------------------C---ATGGTGCGGGGGACCGTG-------------------------------ATGCGGAGGTCCGTGGTGCGGTGGACCATGGTGCGGGGGACCGTGG----TGGGGTGGACCGTGGTGC-----GGAGGTCCGSizeHit CountTotal NormTotal
No Reads
droKik1
TATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATCCTTAGCGAGGATGCATTGGAGGTCCG-------------------GGCGGGTGGTGATG------------------------------------------GTGGT---------------------C---ATGGTGCGGAGGGCCGTG-------------------------------GTGCGGAGGACCGTGGTGCGGCGGGCCGTGGTGCGGAGGACCGTGA----TGCGGAGGACCGTGGTGC-----GGAGGCCCGSizeHit CountTotal NormTotal
No Reads
droAna3
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCTTAGCGAGGATGCATTGGAGGTCCATGATGGTGAGGGTCATGGT----------------GGTGCGGAGGTCCATG---------------------------------------ATGGTGATGGTCATGGTGGTGCGGAGGTCCATG-------------------------------GTGTGGCGGCCCATGGTGCGGAGGTCCGTGGTGCGGAGGTCCATGG----TGCGGAGGACCATGGTGC-----GGAGGTCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCTTAGCGAGGATGCATTGGAGGTCCATGATGGTGAG----------------------------------GGTCATG------------------------------------------------------GTGGTGCGGAGGTCCATG-------------------------------GTGTGGAGGACCGTGGTGCGGGGGTCCATGGTGGGGAGGTCCATGG----TGCGGGGGTCCATGGTGT-----GGAGGTCCASizeHit CountTotal NormTotal
No Reads
dp5
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAACGAGGATGCATGGGAGGTCCATGATGGTGGGCGGGACAAT----------------GGTGCGGAGGTCCGTG---------------------------------------ATGCGGTCCGTGGCAGTGGCAGGGTGGTCCATG-------------------------------GTGCGGCGGCCCGTGGTGCGGCGGCCCGTGGTGCGGGGGACCGTGA----TGCGGGGGCCCACAGTGA-----GGGGGCCCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................CCTAACGAGGATGCATGGGAG.................................................................................................................................................................................................................................................2111.0010000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGTGGTCCATG-------------------------------GTGCG.............................................................................2011.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGGGGACCGTGA----TGCGG...........................2011.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGAGGTCCGTG---------------------------------------ATGCGG............................................................................................................................................2111.0010100000000
droPer2
TTTAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT---TTGTGT--------------------------------------------------------------------------------------TTTA----TTAAC----TA-AAGG----------------TTCCG-----GGTTAAT-CCTAACGAGGATGCATGGGAGGTCCATGATGGTGGGCGGGACAAT----------------GGTGCGGAGGTCCGTG---------------------------------------ATGCGGTCCGTGGCAGTGGCAGGGTGGCCCATG-------------------------------GTGCGGCGGCCCGTGGTGCGGGGGCCCGTGATGCGGGGGCCCACAG----TGAGGGGGCCCGTGGTGA-----GGGGTCCCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................AAT----------------GGTGCGGAGGTCCGTG---------------------------------------AT................................................................................................................................................2111.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTGGCAGTGGCAGGGTGGC......................................................................................................................2311.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTG---------------------------------------ATGCGGTCCGTGGCA...................................................................................................................................2211.001000001
....................................................................................................................................................................................................................................................................................................................................................................................AACGAGGATGCATGGGAGGA...............................................................................................................................................................................................................................................2011.001010000
..................................................................................................................................................................................................................................................................................................................................................................................CTAACGAGGATGCATGGGAGG................................................................................................................................................................................................................................................2111.001000001
droWil2
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGCGGATGCATGGGAGGACCA-------------------TGATGATGGTGTGGAG---------GTCCATG---------------------------------------GTGGGGAGGTCC---ATGATGGGGAGGGCCGTG-------------------------------ATGGGGAGGACCATGATGCGGGGGTCCGTGGTGCGGCGGTCCGTGA----TGGGGAGGCCCGTGATGG-----GAAGGTCCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droMoj3
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-------------------------------------------------GATGTGGTGGTCCGTGATGATGATGATGCTCAACGTGGCCATG------ATGATGATCATAG------------------TGGCCATG----------------------------------------------ATGCGGGGGTCCGTGATGCGGTGGCCCGTGA----TGCGGTGGGCCGTGATGA--------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/19/2015 at 05:43 AM