ID:

dsi_11635

 Coordinate:

2r:6001827-6001956 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.27 -18.17 -17.87

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
TRANSIB2DNACMC-Transib-
TRANSIB2DNACMC-Transib-
mature
  1. dsi_31230  2l:12528463-12528489 +
  2. 2r:1609711-1609737 +
  3. dsi_31400  2r:6284076-6284102 +
  4. dsi_32064  2r:16633089-16633115 +
  5. dsi_31068  3l:9884127-9884153 +
  6. 3l:16148512-16148538 +
  7. dsi_31428  3l:19221551-19221577 +
  8. dsi_31469  3l:19808178-19808204 +
  9. 3l:23246119-23246145 +
  10. 3l:24193071-24193097 +
  11. dsi_31942  3r:612071-612097 +
  12. dsi_32050  3r:4997531-4997557 +
  13. dsi_31167  3r:10541949-10541975 +
  14. dsi_26121  3r:19897327-19897353 +
  15. dsi_31708  x:8490292-8490318 +
  16. dsi_32292  x:15213688-15213714 +
  17. node_96855:5-31 +
  18. node_7313:10620-10646 +
  19. node_115753:120-146 +
  20. node_5723:8-34 +
  21. 3l:20222030-20222056 +
  22. dsi_31650  x:7056448-7056474 +
  23. dsi_31285  2l:18358078-18358104 -
  24. 2l:20892352-20892378 -
  25. 2l:22375675-22375701 -
  26. 2l:23348660-23348686 -
  27. 2r:515669-515695 -
  28. dsi_31246  2r:2515446-2515472 -
  29. dsi_31357  2r:4761870-4761896 -
  30. dsi_11635  2r:6001852-6001878 -
  31. 2r:7781989-7782015 -
  32. dsi_21604  3l:4915408-4915434 -
  33. 3l:23459683-23459709 -
  34. dsi_32004  3r:2674062-2674088 -
  35. dsi_19529  3r:6061752-6061778 -
  36. dsi_31322  3r:14756230-14756256 -
  37. dsi_31476  3r:21154448-21154474 -
  38. 4:233797-233823 -
  39. dsi_31948  4:534693-534719 -
  40. dsi_31453  x:3980392-3980418 -
  41. x:20565611-20565637 -
  42. node_35605:8-34 -
star
  1. dsi_31230  2l:12528391-12528417 +
  2. 2l:15619225-15619251 +
  3. 2l:21944548-21944574 +
  4. 2l:22072364-22072390 +
  5. 2r:520172-520198 +
  6. 2r:605713-605739 +
  7. 2r:625208-625234 +
  8. 2r:2669785-2669811 +
  9. dsi_32064  2r:16633015-16633041 +
  10. dsi_31068  3l:9884053-9884079 +
  11. 3l:16147849-16147875 +
  12. dsi_31469  3l:19808106-19808132 +
  13. 3l:23539076-23539102 +
  14. dsi_31942  3r:611998-612024 +
  15. dsi_32050  3r:4997457-4997483 +
  16. dsi_31708  x:8490219-8490245 +
  17. x:10846361-10846387 +
  18. x:16025640-16025666 +
  19. node_14740:2680-2706 +
  20. node_4799:3439-3465 +
  21. dsi_6166  2l:7470721-7470747 -
  22. dsi_31153  2l:7514332-7514358 -
  23. dsi_31185  2l:9184857-9184883 -
  24. 2r:727369-727395 -
  25. 2r:1581061-1581087 -
  26. 2r:1630233-1630259 -
  27. dsi_11635  2r:6001925-6001951 -
  28. 2r:7783434-7783460 -
  29. dsi_31910  3l:2562289-2562315 -
  30. dsi_31187  3l:12470778-12470804 -
  31. 3l:23549682-23549708 -
  32. dsi_31322  3r:14756304-14756330 -
  33. dsi_31476  3r:21154527-21154553 -
  34. 4:237203-237229 -
  35. 4:245430-245456 -
  36. dsi_31948  4:534772-534798 -
  37. dsi_31453  x:3980477-3980503 -
  38. dsi_31770  x:9257770-9257796 -
  39. x:20566212-20566238 -
  40. node_47470:282-308 -
  41. dsi_31400  2r:6284008-6284034 +
  42. dsi_31428  3l:19221480-19221506 +
  43. node_56646:12849-12875 +
  44. dsi_5440  2l:11491646-11491672 -
  45. dsi_31291  2l:18646627-18646653 -
  46. dsi_31372  2r:5674700-5674726 -
  47. dsi_32127  2r:18153104-18153130 -
  48. dsi_32004  3r:2674137-2674163 -
  49. 3r:4548498-4548524 -
  50. dsi_31688  x:17957991-17958017 -
  51. node_64729:34-60 -
  52. 2l:21639116-21639142 -
  53. 2r:836732-836758 -
  54. 2r:1742081-1742107 -
  55. dsi_31246  2r:2515521-2515547 -
  56. dsi_31311  2r:3468066-3468092 -
  57. dsi_31791  3l:9721369-9721395 -
  58. 3l:22889583-22889609 -
  59. 3l:22946420-22946446 -
  60. 3l:23006448-23006474 -
  61. dsi_31366  3r:17423669-17423695 -
  62. dsi_32150  3r:24635844-24635870 -
  63. node_90918:749-775 -

Sense Strand Reads

GGAGCAAGGAAACATTCAATAGATTTACTCGAACTTCGAAGTCAACTTGTGCCAATGCACTATGGTCCAGAATTCGTTTTTTTTGGCATAAAGTCTAAATTTTTATGTCAATANNTCGTNNTCAAGTCTGTAGCTCAATTTTTAGACTTTATGCCAAAAAAATCGAATTCTGGACCACAGTGCAATGAAAAAAGCCTACAAAATCCTAATGAGAACCTGCAATAAATGTG
*******************************************************.............................(((((((((((((((.........................................)))))))))))))))*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O001
Testis
 M053
female body
 M023
head
 M024
male body
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAA........................................ 26 1 5 51.20 256 226 30 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCA......................................... 25 1 9 29.33 264 226 38 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAAA....................................... 27 1 3 16.00 48 47 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAAAA...................................... 28 1 1 10.00 10 9 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAAAGA..................................... 29 2 4 9.00 36 33 3 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATG........................................... 24 0 9 4.89 44 8 1 22 13 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGCA......................................... 26 1 8 4.63 37 33 4 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCACCGAA......................................... 26 2 11 4.55 50 0 0 25 23 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGCAA........................................ 27 1 5 3.00 15 15 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAAAAA..................................... 29 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAAAT...................................... 28 2 3 2.67 8 8 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGTAGCTCAATTTTTAGACTTTATGCC........................................................................... 27 0 20 2.50 50 0 0 0 0 0 50 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCACCGAA......................................... 25 2 12 2.42 29 0 0 4 8 0 0 9 4 0 0 4 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGAAA........................................ 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGCAAAA...................................... 29 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAAACA..................................... 29 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGAA......................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGCAAA....................................... 28 1 3 1.67 5 5 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCACTGATAA....................................... 27 2 5 1.60 8 4 4 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAAT............................................ 22 0 10 1.60 16 0 0 0 0 0 8 0 0 0 8 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAAT....................................... 27 2 7 1.43 10 10 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCACTGA.......................................... 25 1 15 1.33 20 1 13 5 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TATGCCAAAAAAATCGAATTCTGG......................................................... 24 0 20 1.25 25 0 0 7 0 18 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATG........................................... 23 0 10 1.20 12 11 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCAAGTCTGTAGCTCAATTTTTAGACT.................................................................................. 27 0 20 1.15 23 0 0 1 2 0 0 0 6 13 0 1 0 0
.........................................................................................................................TCAAGTCTGTAGCTCAATTTTTAGA.................................................................................... 25 0 20 1.15 23 0 0 9 0 13 0 0 1 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAAT............................................ 23 0 9 1.11 10 2 0 4 2 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAA............................................. 22 0 13 1.08 14 13 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATTAA......................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCGAATTCTGGACCACAGTGCACCGAA......................................... 27 2 10 1.00 10 0 0 0 2 6 0 0 1 0 0 1 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGAC......................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATTA.......................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTATGGACCACAGTGCAATGA.......................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAAATA..................................... 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGA.......................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGAATA....................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGCAAAGA..................................... 30 2 4 1.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGAA......................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGA.......................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCTGGACCACAGTGCAATG........................................... 20 0 10 0.80 8 0 0 0 0 0 8 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAATA...................................... 28 2 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ATCGAATTCTGGACCACAGTGCACCGAA......................................... 28 2 10 0.70 7 0 0 1 3 2 0 0 0 1 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGATA........................................ 26 1 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGGGCAATGCAA........................................ 26 2 5 0.60 3 3 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGAT......................................... 25 1 7 0.57 4 4 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AAAAAATCGAATTCTGGACCACAGTGC............................................... 27 0 20 0.50 10 0 0 10 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGCGCAGTGAAA........................................ 26 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGTCAAAA..................................... 30 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................TGCACTATGGTCCAGAATTCGTTTTTT.................................................................................................................................................... 27 0 20 0.50 10 0 8 0 0 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCACCGAAAAA...................................... 29 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................TGCACTATGGTCCAGAATTCGTTTTT..................................................................................................................................................... 26 0 20 0.50 10 0 0 0 0 8 0 0 2 0 0 0 0 0
.......................................................................................................................................................................TTCTGGACCACAGTGCAATGCAAAGA..................................... 26 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAAAGAC.................................... 30 3 6 0.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCACTGA.......................................... 24 1 15 0.47 7 3 3 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................AAGTCTGTAGCTCAATTTTTAGACT.................................................................................. 25 0 20 0.45 9 0 1 2 0 0 0 1 0 5 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCGAAGTGCACTGAAAA....................................... 28 3 5 0.40 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCACTGAAA........................................ 26 1 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGCACTATGGTCCAGAATTCGTT........................................................................................................................................................ 23 0 20 0.40 8 8 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGC.......................................... 25 1 18 0.39 7 5 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCGAATTCTGGACCACAGTGCAATGCA......................................... 27 1 8 0.38 3 2 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCACCGAAA........................................ 27 2 6 0.33 2 0 0 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAATAT..................................... 29 3 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAAAAAA.................................... 30 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCA.............................................. 20 0 20 0.30 6 0 0 0 0 0 0 6 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGC.......................................... 24 1 20 0.30 6 3 1 0 0 0 0 0 0 0 2 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCACTGAA......................................... 25 1 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGAT......................................... 26 1 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCATAGTGCAATGAA......................................... 25 1 8 0.25 2 0 0 0 0 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................TGGACCACAGTGCAATGCAAAGA..................................... 23 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGGA......................................... 26 1 12 0.25 3 0 0 1 2 0 0 0 0 0 0 0 0 0
................................................................................................................................TGTAGCTCAATTTTTAGACTTTA............................................................................... 23 0 20 0.25 5 0 0 0 0 0 0 5 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAATTA..................................... 29 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCACTGAAT........................................ 26 2 17 0.24 4 4 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCACCGAACA....................................... 28 3 9 0.22 2 0 0 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGCAATT...................................... 28 3 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................CAATAGAATTACTCAAACT................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTG................................................ 18 0 20 0.20 4 0 0 0 0 0 0 4 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCACTGATAA....................................... 28 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AAAAATCGAATTCTGGACCACAGTGCAA............................................. 28 0 11 0.18 2 0 0 0 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGAATTCTGGACCACAGTGCACCGAAA........................................ 27 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................AATGCACTATGGTCCAGAATTCGTT........................................................................................................................................................ 25 0 12 0.17 2 0 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................TCTGTAGCTCAATTTTTAGACTTTA............................................................................... 25 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCAAGTCTGTAGCTCAATTTTTAGACTT................................................................................. 28 0 20 0.15 3 1 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AAAAATCGAATTCTGGACCACAGTG................................................ 25 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0 0
..............................................................................................................................TCTGTAGCTCAATTTTTAGACTTTATGC............................................................................ 28 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GGATTCTGGACCACAGTGCACTGAA......................................... 25 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCGAATTCTGGACCACAGTGCAAT............................................ 24 0 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................AAATCGAATTCTGGACCACAGTGCAAT............................................ 27 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAA............................................. 21 0 15 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCATTGAA......................................... 25 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAGTTCTGGACCACAGTGCAATGCA......................................... 26 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATT........................................... 24 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACAACAGTGCAATGCA......................................... 25 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AGTGCAATGAATAAAG.................................... 16 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATCCTGGACCACAGTGCAATGCA......................................... 25 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAAGTCTGTAGCTCAATTTTTAGACTTA................................................................................ 28 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TCCAGAATTCGTTTTTTTTGGCATAA........................................................................................................................................... 26 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAAATCGAATTCTGGACCACAGTGCACCGAA......................................... 31 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CTGTAGCTCAATTTTTAGACTTTATGC............................................................................ 27 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTTAGACTTTATGCCAAAAA...................................................................... 20 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0
..........................................................................CGTTTTTTTTGGCATAAAG......................................................................................................................................... 19 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0
.........................................................................................................................TCAAGTCTGTAGCTCAATTTTTAGAA................................................................................... 26 1 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAATCGAATTCTGGACCACAGTGCACCGAA......................................... 30 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAAATCGAATTCTGGACCACAGTGCAA............................................. 27 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATCCTGGACCACAGTGCACCGAA......................................... 26 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AAAAAATCGAATTCTGGACCACAGTGCAA............................................. 29 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCGAATTCTGGACCACAGTGCACTGA.......................................... 26 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ATCGAGTTCTGGACCACAGTGCACCGAA......................................... 28 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGGA......................................... 25 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGAATTCTGGACCACAGTGCAATC........................................... 24 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGAATTCTGGACCACAGTGCACCGAA......................................... 26 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAATGCAATG........................................... 23 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................ATTCTGGACCACAGTGCACCGAA......................................... 23 2 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................CAATGCACTATGGTCCAGAATT............................................................................................................................................................ 22 0 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCAATGACTC....................................... 27 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCAAGTCTGTAGCTCAATATTTAGA.................................................................................... 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................CTGTAGCTCAATTTTTAGA.................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................AATCGAATTCTGGACCACAGTT................................................ 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCACTCA.......................................... 24 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................TCCAGAATTCGTTTTTTTTGGCAT............................................................................................................................................. 24 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................TTAGACTTTATGCCAAAAAAATCG................................................................. 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................ATGCACTATGGTCCAACAG............................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................CAAGTCTGTAGCTCAATTTT........................................................................................ 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................ATTCGTTTTTTTTGGCATA............................................................................................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................AAAATCGAATTCTGGACCAC.................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................AGGGCTGTAGCTCAATT.......................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCAAAGTGCAATGCA......................................... 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATTCTGGACCACAGTGCACTGAATT....................................... 27 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGGCATAAAGTCTAAATTTTTATGTC......................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................TATGGTCCAGAATTCGTTTTTTT................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................CAAGTCTGTAGCTCAATTTTTAGACTT................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CAAAAAAATCGAATTCTGGACCACAG.................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AAAAAATCGAATTCTGGACCAC.................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................TCAAGTCTGTAGCTCAATTTTTAGAC................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................TCAAGTCTGTAGCTCAATTTTTAG..................................................................................... 24 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................AGAATTCGTTTTTTTTGGCA.............................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................TCAAGTCTGTAGCTCAATTTTTAGACAT................................................................................. 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGTAGCTCAATATTTAGACTTTATGC............................................................................ 26 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................TCGTTTTTTTTGGCATAAAG......................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................AAAAAAATCGAATTCTGGACCACAGT................................................. 26 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................GTAGCTCAATTTTTAGACT.................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................ATCGAATTCTGGACCACAGTGC............................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................TGCACTATGGTCCAGAATTCGTTTTTTTA.................................................................................................................................................. 29 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AAGTCTGTAGCTCAATTTTTAGA.................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................CTGTAGCTCAACGGTTAGA.................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................TGTAGCTCAATTTTTAGACTTTATGCCA.......................................................................... 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTATGCCAAAGAGATCGAATT............................................................. 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................CGAATTCTGGACCAAAGTGCAATG........................................... 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCTCGTTCCTTTGTAAGTTATCTAAATGAGCTTGAAGCTTCAGTTGAACACGGTTACGTGATACCAGGTCTTAAGCAAAAAAAACCGTATTTCAGATTTAAAAATACAGTTATNNAGCANNAGTTCAGACATCGAGTTAAAAATCTGAAATACGGTTTTTTTAGCTTAAGACCTGGTGTCACGTTACTTTTTTCGGATGTTTTAGGATTACTCTTGGACGTTATTTACAC
***************************************************************************.............................(((((((((((((((.........................................)))))))))))))))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902008
ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 M023
head
..................................................................................................................................................GAAATACGGTTTTTTTAGCTT............................................................... 21 0 20 6.10 122 122 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AATACGGTTTTTTTAGCTTAAGACCT........................................................ 26 0 20 3.20 64 60 3 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................AGCTTAAGACCTGGTGTCAC................................................ 20 0 20 3.10 62 62 0 0 0 0 0 0 0 0 0 0
..................................................CGGTGACGTGATACCAGGTCTTAAG........................................................................................................................................................... 25 1 17 2.71 46 0 46 0 0 0 0 0 0 0 0 0
.....................................................TTACGTGATACCAGGTCTTAAGC.......................................................................................................................................................... 23 0 13 1.92 25 0 7 17 1 0 0 0 0 0 0 0
.....................................................TTACGTGATACCAGGTCTTAAG........................................................................................................................................................... 22 0 13 1.62 21 0 4 12 1 0 2 0 2 0 0 0
..................................AAGCCTCAGTGGAGCACGGT................................................................................................................................................................................ 20 3 2 1.50 3 0 0 0 0 0 3 0 0 0 0 0
..........................TGAGCTTGAAGCTTCAGTT......................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......................TAAACAAGCTTGAAGCTTCAG........................................................................................................................................................................................... 21 2 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0
......................................................TACGTGATACCAGGTCTTAAGC.......................................................................................................................................................... 22 0 15 1.00 15 0 5 10 0 0 0 0 0 0 0 0
....................................................GTTACGTGATACCAGGTCTTAAGC.......................................................................................................................................................... 24 0 13 0.92 12 8 1 0 2 0 0 0 1 0 0 0
.....................................................................................................................................................ATACGGTTTTTTTAGCTTAAGACCT........................................................ 25 0 20 0.90 18 0 6 0 0 0 0 0 1 0 11 0
.................................................................................................................................................................TAGCTTAAGACCTGGTGTCACGT.............................................. 23 0 20 0.80 16 0 0 0 12 0 0 3 1 0 0 0
...................................................GGTTACGTGATACCAGGTCTTAAG........................................................................................................................................................... 24 0 4 0.75 3 0 1 0 1 0 0 0 0 1 0 0
.....................................................TTACGTGATACCAGGTCTTAAGCAA........................................................................................................................................................ 25 0 12 0.67 8 0 3 0 2 1 0 0 0 2 0 0
.........................................................................AGCAAAAAAAACCGTATTTCAGATTT................................................................................................................................... 26 0 20 0.60 12 0 0 0 0 9 3 0 0 0 0 0
.......................................................ACGTGATACCAGGTCT............................................................................................................................................................... 16 0 20 0.60 12 0 0 0 1 9 0 2 0 0 0 0
..................................................CGGTTACGTGATAGCAGTTCTAAAG........................................................................................................................................................... 25 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
...................................................GGTTACGTGATACCAGGTCTTAAGC.......................................................................................................................................................... 25 0 4 0.50 2 0 0 0 1 0 1 0 0 0 0 0
........................................................CGTGATACCAGGTCTTAAGC.......................................................................................................................................................... 20 0 20 0.40 8 0 0 0 7 0 0 0 0 1 0 0
...........................................................................................................................................................TTTTTTTAGCTTAAGACCTGGTGT................................................... 24 0 20 0.40 8 0 8 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTTAGCTTAAGACCTGGTGTCACGT.............................................. 25 0 20 0.40 8 0 5 0 0 0 2 0 1 0 0 0
....................................................GTTACGTGATACCAGGTCTTAAG........................................................................................................................................................... 23 0 13 0.38 5 0 0 2 0 0 1 0 0 2 0 0
..................................................CGGTGACGTGATACCAGGTCTTAAGC.......................................................................................................................................................... 26 1 17 0.35 6 0 6 0 0 0 0 0 0 0 0 0
............................................................................................................................TCAGACATCGAGTTAAAAATCTGAA................................................................................. 25 0 20 0.35 7 0 1 0 2 0 4 0 0 0 0 0
..................................................................................................................................................................AGCTTAAGACCTGGTGTCACGT.............................................. 22 0 20 0.35 7 0 0 0 6 0 0 1 0 0 0 0
....................................................................................................................................................................CTTAAGACCTGGTGTCACGTGGCTT......................................... 25 2 12 0.33 4 0 0 0 1 1 2 0 0 0 0 0
.....................................................................................................................................................ATACGGTTTTTTTAGCTTAAGACC......................................................... 24 0 20 0.30 6 0 0 5 0 0 1 0 0 0 0 0
............................................................................................................................................................TTTTTTAGCTTAAGACCTGGTGTCACGT.............................................. 28 0 20 0.30 6 0 0 0 3 3 0 0 0 0 0 0
...................................................GGTTCCGTGATACCAGGTCTTA............................................................................................................................................................. 22 1 7 0.29 2 0 0 0 0 0 0 0 0 2 0 0
......................................................TACGTGATACCAGGTCTTAAGCAAAA...................................................................................................................................................... 26 0 11 0.27 3 0 3 0 0 0 0 0 0 0 0 0
.................................................ACGGTGACGTGATACCAGGTCTTAAG........................................................................................................................................................... 26 1 8 0.25 2 0 2 0 0 0 0 0 0 0 0 0
..............................................AATACGGTTACGTGATA....................................................................................................................................................................... 17 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................ATTTCAGATTTAAAAATACAGTTAT..................................................................................................................... 25 0 20 0.25 5 0 0 0 0 0 1 4 0 0 0 0
.....................................................................................................................................................................TTAAGACCTGGTGTCACGTGGCTT......................................... 24 2 13 0.23 3 0 0 0 1 2 0 0 0 0 0 0
........................................................................AAGCAAAAAAAACCGTATTTCAGATT.................................................................................................................................... 26 0 20 0.20 4 0 0 0 2 0 0 2 0 0 0 0
..............................................................................................................................................................TTTTAGCTTAAGACCTGGTGTCACGT.............................................. 26 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0
......................................................................................................................................................TACGGTTTTTTTAGCTTAAGACCT........................................................ 24 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0
......................................................................TTAAGCAAAAAAAACCGTATTTCAGATT.................................................................................................................................... 28 0 20 0.20 4 0 0 0 0 0 0 4 0 0 0 0
..................................................AGGTTACGTGATACCAGGTCTTAAG........................................................................................................................................................... 25 1 16 0.19 3 0 0 3 0 0 0 0 0 0 0 0
......................................................TACGTGATACCAGGTCTTAAGCAAAAA..................................................................................................................................................... 27 0 11 0.18 2 0 1 0 1 0 0 0 0 0 0 0
..................................................GGGTTACGTGATACCAGGTCTTAAG........................................................................................................................................................... 25 1 12 0.17 2 0 0 0 0 2 0 0 0 0 0 0
..........................TGAGCTTGATGCTTC............................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
..................................................CAGTTACGTGATACCAGGTCTTAAG........................................................................................................................................................... 25 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
....................................................ATTACGTGATACCAGGTCTTAAGC.......................................................................................................................................................... 24 1 13 0.15 2 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AAAAACCTGAAATACGGTTTTTTTAGCTT............................................................... 29 1 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0
.................................................................................................................................................TGAAATACGGTTTTTTTAGCTTAAGACC......................................................... 28 0 20 0.15 3 0 1 2 0 0 0 0 0 0 0 0
......................................................................................................................................................TACGGTTTTTTTAGCTTAAG............................................................ 20 0 20 0.15 3 0 0 0 0 0 0 0 3 0 0 0
.........................................................GTGATACCAGGTCTTAAGC.......................................................................................................................................................... 19 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0
.......................................................ACGTGATACCAGGTCTTAAG........................................................................................................................................................... 20 0 20 0.15 3 0 1 1 0 0 1 0 0 0 0 0
...................................................................................................................................................AAATACGGTTTTTTTAGCTTAAGACCT........................................................ 27 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
.............................................................................AAAAAAACCGTATTTCAGATTT................................................................................................................................... 22 0 20 0.15 3 0 0 0 0 0 0 2 0 0 1 0
......TCCTATGTAAGTTCTCT............................................................................................................................................................................................................... 17 2 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0
......................................................................TTAAGCAAAAAAAACCGTATTTCAGA...................................................................................................................................... 26 0 20 0.15 3 0 0 0 1 1 0 1 0 0 0 0
.................................................................................................................................................................TAGCTAAAGACCTGGTGTCATGTTA............................................ 25 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0
................................................CGAGGTTACGTGATACCAGGTCTT.............................................................................................................................................................. 24 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................AGCTTAAGACCTGGTGTCACGTTAC........................................... 25 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................CTGAAATACGGTTTTTTTAGCTTAAGACC......................................................... 29 0 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................TTTTTTAGCTTAAGACCTGGTGTCA................................................. 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
.................................................CAGGTTACGTGATACCAGGTCTTAAG........................................................................................................................................................... 26 2 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GTTTTTTTAGCTTAAGACCTGGTGT................................................... 25 0 20 0.10 2 0 0 1 0 0 0 1 0 0 0 0
.............................................................................................................................CAGACATCGAGTTAAAAATCTGAAAT............................................................................... 26 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0
..................................................CCGCTACGTGATACCAGGTCTTAAG........................................................................................................................................................... 25 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................TTTTTAGCTTAAGACCTGGTGTCACGT.............................................. 27 0 20 0.10 2 0 0 1 0 0 1 0 0 0 0 0
.......................................................ACGTGATACCAGGTCTT.............................................................................................................................................................. 17 0 20 0.10 2 0 0 0 0 1 0 1 0 0 0 0
............................................................................................................................................................TTTTTTAGCTTAAGACCTGGTGT................................................... 23 0 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................GGTTTTTTTAGCTTAAGACCTGGTGT................................................... 26 0 20 0.10 2 0 0 0 1 0 0 1 0 0 0 0
.......................................................................................................................................................ACGGTTTTTTTAGCTTA.............................................................. 17 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0
...................................................................................................................................................AAATACGTTTTTTTTAGCTTAAGACC......................................................... 26 1 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0
.......................................................ACGTGATACCAGGTCTTAAGC.......................................................................................................................................................... 21 0 20 0.10 2 0 0 1 1 0 0 0 0 0 0 0
...................................................................................................................................TCGAGTTAAAAATCTGAA................................................................................. 18 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0
..............................................................................................................................AGACATCGAGTTAAAAATCTGAA................................................................................. 23 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
.................................................................................................................................................................TAGCTTAAGACCTGGTGTCACGTT............................................. 24 0 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................GCTTAAGACCTGGTGTCACGTGGCTT......................................... 26 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................AATTTAGCTTAAGACCTGGTGTCACGTT............................................. 28 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TTAGCTTAAGACCTGGTGTCACGTGACT.......................................... 28 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................AGTCCTGGTGTCACGTTAC........................................... 19 1 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1
..........................TGAGCTTGAAGGTGCAG........................................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................TTTTGCCGGAAGTTTTAGGA....................... 20 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................TTACGTGATACCAGGTCTTGAGCAA........................................................................................................................................................ 25 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0
................................................CTCGGTTACGTGACACCAGGTCTTAAGC.......................................................................................................................................................... 28 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................TTAAGTGATACCAGGTCTTAAGCAA........................................................................................................................................................ 25 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................TAAGACCTGGTGTCACGTGGCTT......................................... 23 2 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0
....................................................CTTACGTGATACCAGGTCTTAAG........................................................................................................................................................... 23 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
......................................................TACGTGATACCAGGTCTTAAG........................................................................................................................................................... 21 0 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0
................................................CATGGTCACGTGATACCAGGTCTTAAG........................................................................................................................................................... 27 2 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0
..................................................AGGTTACGTGATACCAGGTCTTAAGC.......................................................................................................................................................... 26 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTTTAGGAGGTGTTAGGAT...................... 20 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0
..................................................CGGTGACGTAATACCAGGTATTAAG........................................................................................................................................................... 25 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0
...............................................ATACGGTTACGTGATAG...................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0
..........................AGAGCTTGAAGCTTC............................................................................................................................................................................................. 15 1 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0
....................................................GATACGTGATACCAGGTCTTAAG........................................................................................................................................................... 23 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
......................................................TACGTGATACCAGGTCTAAAGC.......................................................................................................................................................... 22 1 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
........................................................CGTGATACCAGGTCTTAAGCAAAAAAA................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................TCAGACATCGAGTTAAAAATCTGAAAT............................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................AAGCAAAAAAAACCGTATTTCAGATTTAA................................................................................................................................. 29 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................AGTTAAAAATCTGAAATACGGTTTT....................................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
...................................................CGTTACGTGATACCAGGTCTTAAG........................................................................................................................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................GTTTTTTTAGCTTAAGACCTGGTGTC.................................................. 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................TACGGTTTTTTTAGCTTA.............................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................TTCCGTTATAACAGGTCTTAAG........................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................ACGGTTTTTTTAGCTTAAG............................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................ACGGTTTTTTTAGCTTAAGACC......................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................TGATACCAGGTCTTAAGC.......................................................................................................................................................... 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................CTGAAATACGGTTTTTTTAGCTTAAGACCT........................................................ 30 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................AAGCAAAAAAAACCGTATTTCAGA...................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................TTTTTTTAGCTTAAGACCTGGTGTCA................................................. 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................AGCAAAAAAAACCGTATTTCAGATT.................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................CCAGGTCTTAAGCAAAAAAA................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................................CTTAAGCAAAAAAAACCGTATTTCAGAT..................................................................................................................................... 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................AAAGCTTAAGACCTGGTGTCACGT.............................................. 24 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................GTTCAGACATCGAGTTAAAAATCT.................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...................................................GGTTACGAGATACCAGC.................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................AATAGCTTAAGACCTGGTGTCACGT.............................................. 25 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................TTAGCTTAAGACCTGGTGTCACGT.............................................. 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................CAAAAAAAACCGTATTTCAGAT..................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................TAAAAATCTGAAATACGGT.......................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................ATACGGTTTTTTTAGCTTAAGATC......................................................... 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................TAAGCAAAAAAAACCGTATTTCAGAT..................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................ATACGTTTTTTTTAGCTTAAGACCT........................................................ 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................AAATACGGTTTTTTTAGCTTAAGACC......................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................CTGAAATACGGTTTTTTTAGCTT............................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................GGTCTTAAGCAAAAAAAACCGTAT............................................................................................................................................ 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................TAAGCAAAAAAAACCGTATTTCAGATT.................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................TCTGAAATACGGTTTTTTTAGCTT............................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGTTCAGACATCGAGTA............................................................................................ 17 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................AAAAAAAACCGTATTTCAGATTTAAAAAT............................................................................................................................. 29 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................TTCAGACATCGAGTTAAA......................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................ATCGAGTTAAAAATCTGAAATACGGT.......................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AAAAATCTGAAATACGGTTTTTTTAGCTTA.............................................................. 30 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................TTTTAGCTTAAGACCTGGTGTCACG............................................... 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................CAGACATCGAGTTAAAAATCTGAA................................................................................. 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................TTTTTTTAGCTTAAGAC.......................................................... 17 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................ATTTTAGCTTAAGACCTGGTGT................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................GTTCAGACATCGAGTTAAAAAT...................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
........................................................................AAGCAAAAAAAACCGTATTTCAGAT..................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................AGTTCAGACATCGAGTTAAAAAT...................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................CAAAAAAAACCGTATTTCAGATTTAA................................................................................................................................. 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................CGGTTTTTTTAGCTTAAGACCTGGT..................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................AAGTGATACCAGGTCTTAAGCAA........................................................................................................................................................ 23 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................ATAGCTTAAGACCTGGTGTCAC................................................ 22 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
................................................CAAGGTTGCGAGATACCA.................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................ATTTAGCTTAAGACCTGGTGTCACGT.............................................. 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................AAAACCGTATTTCAGATTTAAAAAT............................................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
.......................................................ACGTGATACCAGGTC................................................................................................................................................................ 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................GACATCGAGTTAAAAAT...................................................................................... 17 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...................................................CGTTACGTGATACCAGGTCTTGAG........................................................................................................................................................... 24 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................AGTTCAGACATCGAGTTAAAAATCT.................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................AATACGGTTTTTTTAGCTTAAGA........................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................AAAAACCGTATTTCAGATTTAAAAAT............................................................................................................................. 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................GGTCTTAAGCAGGAAAAACCGTATTT.......................................................................................................................................... 26 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................TTTCGGATGTCTTGGG........................ 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...................................................CTTTACGTGATACCAGGTCTTAAGC.......................................................................................................................................................... 25 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................GATACCAGGTCTTAAGCAAAAAAAA.................................................................................................................................................. 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
........................................................CGTGATACCAGGTCTTAAGCAAAAAA.................................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................TCAGACATCGAGTTAAAAAT...................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................GTGATACCAGGTCTTAAGCAAAAAAA................................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................AGGTCTTAAGCAAAAAAAACCGTATT........................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................TGAGTTAAAAATCTGAAATACGGTT......................................................................... 25 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................AAGCAAAAAAAACCGTATTTCAGATTT................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................AAAACCTGAAATACGGTTTTTTTAGCTT............................................................... 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
........................................................CGTGATACCAGGTCTTAAGCAAAA...................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................GTGATACCAGGTCTTAAGCAAA....................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................CGAGTTAAAAATCTGAA................................................................................. 17 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................AAAAACCGTATTTCAGATTT................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..............AGGTTATCTAACTGAG........................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................TGCAAAAAAAACCGTATTTCAGATTT................................................................................................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................AAAAACCGTATTTCAGATTTAAAAA.............................................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................ACGGTTTTTTTAGCTTAAGACCTGGTGT................................................... 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................ACGTGATACCAGGTCTTAAGCAAAAAA.................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................AAAAAACCGTATTTCAGATTTAAAA............................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................GCTTAAGACCTGGTGTCACGT.............................................. 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................TCTGGTGTCACGTTAGT.......................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:6001777-6002006 - dsi_11635 GGAGCA-A-----GGAAA----CATTCAATAGATTTACTCGAACTTCGA---------------AGTCAACTTG-TGCCAATGCA-C--TATGGTCCAGAATTCGTTTTTTTTGGCATAAA--GTCTAAATTTTTATGTCAATANNTCGTNNT---------------------------CAAGTC--TGTAGCTCAATTTTTAGACTTTATGCCAAAA-AAATCGAATTCTGGACCACAGTGCAATGAAAA---AAGCCTAC----AAAATCCTAATGAGA-ACCTGCAAT-----------------------------------------------------------------------------------------------------AAATGTG
droSec2 scaffold_90:52063-52246 - GAAGTT-GTTT-------------------------------------------------------------CA-CTACATTGCC-C--TATGGTCCAGAATTCGTTTTTTTTGGCATAAA--GTCTAAATTTTTATGGAAATATATCGTAAT---------------TTAGCAATT---------------ATTATATAATTATATATTATATAAATA------------------------------------------------------------AAA-ACCAAAAACA---------------------------------------------------------AAATTGACCGAAAGCTTCACTAAATCTTTTTATGAGCTTTAAAAGGTGCA
dm3 chr3LHet:1726047-1726169 + GGAGGGAGGAG------T----TAACTACAAAAATTGCACAA----------CCTATCTAAGCT--------CG-CTACATTGCA-C--TATGGTCCAGAATTCGTTTTTTTTGGCATAAA--GTCTAAATTTTTATGTCAATATATCGT-----------------------------------------------------------------------------CCTCTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:1996083-1996242 + GTCGA------------------------------------------------------------------------CTAGTGTAAATCTACTGGC-----AAAA-TTTTTTTGTCACAAA--TTATCAAT----------------------GCCATAACAATAAAATGTGTGAAGTTTGAACCA--TGTAACTCAATTTTTCGACTTTATGCCAAAA-AAATCGAATTCTGGACCACAGTGCAAACGATA---------------------------GAA-ATT-------------------------------------------------------------------------------------------------------T----AAAAGA
droYak3 v2_chrUn_1789:591-708 - TCGCAT------------------------------------------------------------------------------------------------------TTTTTTTCACAAA--TTATCAAT----------------------GCTATAACAATAAAATGTGTGAAGTTTAAACCA--TGTAACTCAATTTTTCGACTTTATGCCCAA--AAATCTAATTCTGGACCATAGTGCAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409183:841390-841547 - GGAGCA-GCAAAAAGAAA----CATTCAATAGAATTACTCATACTTGGA--A------------AATCAAC-----------------------------------------------------------------------------------------------------------------------------------------TTGTGCCAATG-GAAACC----------------------------------TAC----AAAATCCTAATAAGAAACCTGCTAAAAACAAAA-------------------TGTGGCATAGCGTAAATTAACAAACAATTGAATAAT-----------------AATAATAATA-----------ATAATGA
droBia1 scf7180000300001:911-1025 - GGAGCTAGCAT--TCATG----CCTG-----------CTGGAACGGTGA---ACTACCCAATTTCTT--------CACCAATTCA-C--TATGGTCCAGAACCCGTT-TTTTTGGCATAAA--GTCGA-TTTTTTATGTCAATATATCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415724:3791-3910 - AAGTCT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTCAATTTTTAGAACTTATGCCAAAA-AAATCTACTTTTGGACCATAGTGCACTCTATA---------------------------A-----------GAT-----GAGCTACTCCGTGTTCTTGTTACGACAATTTATTCACTAAA-----------------------------------------------------CTAAATA
droEle1 scf7180000491201:1026527-1026589 - AGAGCA-GCAA--AGGAA----CATTCAATAGATTTACTCGTAATTGAATAA------------AAGCAAC--------------------------------------------------------------TTGTGCCAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000776936:25497-25605 - AACTA--TTAT--AGAGA----TCTT-----------CGCGAA---------TCAAGTTGAGTT--------TGCTTCCGCTGCA-C--TATGGTCCAGAAGTCGATTTTTTTGGCATAAA--TACCAAATTTTTATGTTAATGTTTTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453851:1073609-1073737 + AGAGCA-GCAA--AGGAA----CATTCAATAGATTTACTCATACTCGAA--A------------GAACAAC-----------------------------------------------------------------------------------------------------------------------------------------TTGTGCCAAAG-AAAACG----------------------------------TAAAAAACAAATCCTAAAGAGA-ACCTGCTAGAA-----A-------------------AGCGGCATAGCGTAATTAAAT-----------------------------------------------------AAATAAA
droKik1 scf7180000301697:59811-59922 + TAATGA-AGGA-----GA----ATTAGAATTAATTATTTCGTACAAT---------------TCAGTC-------AGCCAATGCA-C--TATGGTCCAGAATCCGTT-TTTTTGGCATAAA--GTCGATTTTTTTATGTTAATATATCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13333:329272-329354 + TTAGGT-CTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTCTATTTTTAGAATTTATGCCAAAA-AAATCAACTTCTGGACCATAGTGCACTGTATA---------------------------TAA-CAT-------------------------------------------------------------------------------------------------------C----CGATAT
droBip1 scf7180000391919:1735-1838 - TTAT------------------------------------------------------------------------ACCCTTGCA-C--TATGGTCCAAAATTCGGATTTTTTGGCATAAA--GTCGAAATTTTTATGTTAATGTTTTGTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGTTTTAAATTCTTAAAG-----------------------------------------------------TTAATAC
dp5 3:2421002-2421188 + GCT----------------------------------------------------------------------------AGAGCA-C--TATGGTCCAGACTTCGTT-TTTTTGGCAGAAAAAACCGA-AATTTTATGAAAATACTCCA-------------AATAATTGTGCAAAGTTTCAAGGCTTTCTGGCTTTCAAACTAGACTTTATGCCAAAAAAAATCGTCTTCTGGACCATAGTGCAGAGTACG---------------------------AAA-AACA---------------------------------------------------------------AAAAC-----------------AATCTCTCTATG-----------AGCAC
droPer2 scaffold_10:189053-189119 + CTTGT-----------------------------------------------------------------------ACCGCTTCA-C--TATGGTCCAGAATTCGTTTTTTTTGGCATAAA--GTCGAAATTTTTATGTGAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004967:2121513-2121612 - TGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACAATTTTTAGACTTTATGCCAAAAAAAAACGAAGTCTGGACCAAAGTGCAGTGTGGACTGTAGCAAAA----TAAAACCAGATGAAA-ACCAG-----------------------------------------------------------------------------------------------------------AAATA
droMoj3 scaffold_4436:6858-6939 - AACTTT-AGAT-----------------------TT---------------------------------------AACCAGTGCA-C--TATGGTCCAGATTTCGTTTTTTTTGGCATAAA--GTCTATTTTTCGATGTTAATGAATCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:9746362-9746437 + GTAATA-ATAA--TAACAAATTCATTAACTAGATTTATTCTCACCTTG------------------TTTTC-----------------------------------------------------------------------------------------------------------------------------------------GTGTGCCAAAA-AAATGT------------------------------------------------------------------------------------------------GTT---------------------------------------------------------------------AGAGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGAGCA-A-----GGAAA----CATTCAATAGATTTACTCGAACTTCGA---------------AGTCAACTTG-TGCCAATGCA-C--TATGGTCCAGAATTCGTTTTTTTTGGCATAAA--GTCTAAATTTTTATGTCAATANNTCGTNNT---------------------------CAAGTC--TGTAGCTCAATTTTTAGACTTTATGCCAAAA-AAATCGAATTCTGGACCACAGTGCAATGAAAA---AAGCCTAC----AAAATCCTAATGAGA-ACCTGCAAT-----------------------------------------------------------------------------------------------------AAATGTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................CGAATTCTGGACCACAGTGCAATG........................................................................................................................................................2494.89440000002201300018000
............................................................................................................................................................................................TGTAGCTCAATTTTTAGACTTTATGCC.........................................................................................................................................................................................27202.5050000005000000000000
................................................................................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGAAA.....................................................................................................................................................2712.00200000000000011000
................................................................................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGAA......................................................................................................................................................2612.00200000000000002000
.................................................................................................................................................................................................................................GAATTCTGGACCACAGTGCAAT.........................................................................................................................................................22101.601600008800000000000
.................................................................................................................................................................................................................TATGCCAAAA-AAATCGAATTCTGG......................................................................................................................................................................24201.2525000000718000000000
.................................................................................................................................................................................................................................GAATTCTGGACCACAGTGCAATG........................................................................................................................................................23101.2012000000001000011000
........................................................................................................................................................T---------------------------CAAGTC--TGTAGCTCAATTTTTAGACT................................................................................................................................................................................................27201.1523001310010260000000
........................................................................................................................................................T---------------------------CAAGTC--TGTAGCTCAATTTTTAGA..................................................................................................................................................................................................25201.1523000000913010000000
................................................................................................................................................................................................................................CGAATTCTGGACCACAGTGCAAT.........................................................................................................................................................2391.111000000041210002000
................................................................................................................................................................................................................................CGAATTCTGGACCACAGTGCAA..........................................................................................................................................................22131.0814000000000000113000
................................................................................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGAC......................................................................................................................................................2611.00100000000000001000
................................................................................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGA.......................................................................................................................................................2511.00100000010000000000
.................................................................................................................................................................................................................................GAATTCTGGACCACAGTGCAATGAA......................................................................................................................................................2511.00100000000000001000
.................................................................................................................................................................................................................................GAATTCTGGACCACAGTGCAATGA.......................................................................................................................................................2411.00100000000000001000
....................................................................................................................................................................................................................................TTCTGGACCACAGTGCAATG........................................................................................................................................................20100.80800000800000000000
.................................................................................................................................................................................................................................GAATTCTGGACCACAGTGCAATGAT......................................................................................................................................................2570.57400000000000004000
........................................................................................................................................................................................................................AAA-AAATCGAATTCTGGACCACAGTGC............................................................................................................................................................27200.5010000000100000000000
.................................................................................TGCA-C--TATGGTCCAGAATTCGTTTTTT.................................................................................................................................................................................................................................................................................................27200.501000000002000080000
.................................................................................TGCA-C--TATGGTCCAGAATTCGTTTTT..................................................................................................................................................................................................................................................................................................26200.501000000008020000000
.....................................................................................................................................................................................AAGTC--TGTAGCTCAATTTTTAGACT................................................................................................................................................................................................25200.45900500020001010000
.................................................................................TGCA-C--TATGGTCCAGAATTCGTT.....................................................................................................................................................................................................................................................................................................23200.40800000000000008000
................................................................................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGC.......................................................................................................................................................25180.39700000000000025000
.................................................................................................................................................................................................................................GAATTCTGGACCACAGTGCA...........................................................................................................................................................20200.30600000000006000000
.................................................................................................................................................................................................................................GAATTCTGGACCACAGTGCAATGC.......................................................................................................................................................24200.30600002000000013000
................................................................................................................................................................................................................................CGAATTCTGGACCACAGTGCAATGAT......................................................................................................................................................2670.29200000000000002000
............................................................................................................................................................................................TGTAGCTCAATTTTTAGACTTTA.............................................................................................................................................................................................23200.25500000000005000000
.................................................................................................................................................................................................................................GAATTCTGGACCACAGTG.............................................................................................................................................................18200.20400000000004000000
.........................................................................................................................................................................................................................AA-AAATCGAATTCTGGACCACAGTGCAA..........................................................................................................................................................28110.18200000001100000000
...............................................................................AATGCA-C--TATGGTCCAGAATTCGTT.....................................................................................................................................................................................................................................................................................................25120.17200000001000010000
........................................................................................................................................................................................TC--TGTAGCTCAATTTTTAGACTTTA.............................................................................................................................................................................................25200.15300000000000003000
........................................................................................................................................................T---------------------------CAAGTC--TGTAGCTCAATTTTTAGACTT...............................................................................................................................................................................................28200.15300000000000021000
.........................................................................................................................................................................................................................AA-AAATCGAATTCTGGACCACAGTG.............................................................................................................................................................25200.15300000003000000000
........................................................................................................................................................................................TC--TGTAGCTCAATTTTTAGACTTTATGC..........................................................................................................................................................................................28200.15300000000300000000
...............................................................................................................................................................................................................................TCGAATTCTGGACCACAGTGCAAT.........................................................................................................................................................2470.14100000000010000000
............................................................................................................................................................................................................................AAATCGAATTCTGGACCACAGTGCAAT.........................................................................................................................................................2770.14100000000100000000
.................................................................................................................................................................................................................................GAATTCTGGACCACAGTGCAA..........................................................................................................................................................21150.13200000000000002000
................................................................................................................................................................................................................................CGAATTCTGGACCACAGTGCAATT........................................................................................................................................................2490.11100000000000001000
....................................................................................................................................................................................CAAGTC--TGTAGCTCAATTTTTAGACTTA..............................................................................................................................................................................................28200.10200000000000002000
..............................................................................................TCCAGAATTCGTTTTTTTTGGCATAA........................................................................................................................................................................................................................................................................................26200.10200000000000020000
.........................................................................................................................................................................................C--TGTAGCTCAATTTTTAGACTTTATGC..........................................................................................................................................................................................27200.10200000000200000000
........................................................................................................................................................................................................TTTAGACTTTATGCCAAAA-A...................................................................................................................................................................................20200.10200000000020000000
.......................................................................................................CGTTTTTTTTGGCATAAA--G....................................................................................................................................................................................................................................................................................19200.10220000000000000000
........................................................................................................................................................T---------------------------CAAGTC--TGTAGCTCAATTTTTAGAA.................................................................................................................................................................................................26200.10200000000000011000
..........................................................................................................................................................................................................................A-AAATCGAATTCTGGACCACAGTGCAA..........................................................................................................................................................27110.09100000000000001000
........................................................................................................................................................................................................................AAA-AAATCGAATTCTGGACCACAGTGCAA..........................................................................................................................................................29110.09100000010000000000
................................................................................................................................................................................................................................CGAATTCTGGACCACAGTGCAATC........................................................................................................................................................24130.08100000000000001000
..............................................................................CAATGCA-C--TATGGTCCAGAATT.........................................................................................................................................................................................................................................................................................................22140.07100000001000000000
.................................................................................................................................................................................................................................GAATTCTGGACCACAGTGCAATGACTC---.................................................................................................................................................27170.06100000000000010000
.........................................................................................................................................................................................C--TGTAGCTCAATTTTTAGA..................................................................................................................................................................................................19200.05100000000001000000
.............................................................................................................................................................................................................................AATCGAATTCTGGACCACAGTT.............................................................................................................................................................22200.05110000000000000000
..............................................................................................TCCAGAATTCGTTTTTTTTGGCAT..........................................................................................................................................................................................................................................................................................24200.05100000000010000000
.........................................................................................................................................................................................................TTAGACTTTATGCCAAAA-AAATCG..............................................................................................................................................................................24200.05100000000001000000
....................................................................................................................................................................................CAAGTC--TGTAGCTCAATTTT......................................................................................................................................................................................................20200.05100000010000000000
....................................................................................................ATTCGTTTTTTTTGGCATA.........................................................................................................................................................................................................................................................................................19200.05110000000000000000
..........................................................................................................................................................................................................................A-AAATCGAATTCTGGACCAC.................................................................................................................................................................20200.05110000000000000000
................................................................................................................TGGCATAAA--GTCTAAATTTTTATGTC....................................................................................................................................................................................................................................................................26200.05100000000001000000
.........................................................................................TATGGTCCAGAATTCGTTTTTTT................................................................................................................................................................................................................................................................................................23200.05100000000001000000
....................................................................................................................................................................................CAAGTC--TGTAGCTCAATTTTTAGACTT...............................................................................................................................................................................................27200.05100000000000001000
......................................................................................................................................................................................................................CAAAA-AAATCGAATTCTGGACCACAG...............................................................................................................................................................26200.05100000000000001000
........................................................................................................................................................................................................................AAA-AAATCGAATTCTGGACCAC.................................................................................................................................................................22200.05100100000000000000
........................................................................................................................................................T---------------------------CAAGTC--TGTAGCTCAATTTTTAGAC.................................................................................................................................................................................................26200.05100000000001000000
........................................................................................................................................................T---------------------------CAAGTC--TGTAGCTCAATTTTTAG...................................................................................................................................................................................................24200.05100000001000000000
.................................................................................................AGAATTCGTTTTTTTTGGCA...........................................................................................................................................................................................................................................................................................20200.05100010000000000000
......................................................................................................TCGTTTTTTTTGGCATAAA--G....................................................................................................................................................................................................................................................................................20200.05110000000000000000
.......................................................................................................................................................................................................................AAAA-AAATCGAATTCTGGACCACAGT..............................................................................................................................................................26200.05100000000010000000
.............................................................................................................................................................................................GTAGCTCAATTTTTAGACT................................................................................................................................................................................................19200.05100000000001000000
..............................................................................................................................................................................................................................ATCGAATTCTGGACCACAGTGC............................................................................................................................................................22200.05101000000000000000
.................................................................................TGCA-C--TATGGTCCAGAATTCGTTTTTTTA...............................................................................................................................................................................................................................................................................................29200.05100000000000001000
.....................................................................................................................................................................................AAGTC--TGTAGCTCAATTTTTAGA..................................................................................................................................................................................................23200.05100000000001000000
............................................................................................................................................................................................TGTAGCTCAATTTTTAGACTTTATGCCA........................................................................................................................................................................................28200.05100000000100000000
droSec2
GAAGTT-GTTT-------------------------------------------------------------CA-CTACATTGCC-C--TATGGTCCAGAATTCGTTTTTTTTGGCATAAA--GTCTAAATTTTTATGGAAATATATCGTAAT---------------TTAGCAATT---------------ATTATATAATTATATATTATATAAATA------------------------------------------------------------AAA-ACCAAAAACA---------------------------------------------------------AAATTGACCGAAAGCTTCACTAAATCTTTTTATGAGCTTTAAAAGGTGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................TCGTTTTTTTTGGCATAAA--GTCTA................................................................................................................................................................................................................................................................................24130.0811000
.....................................................................................................TTCGTTTTTTTTGGCATAAA--G....................................................................................................................................................................................................................................................................................21160.0610010
dm3
GGAGGGAGGAG------T----TAACTACAAAAATTGCACAA----------CCTATCTAAGCT--------CG-CTACATTGCA-C--TATGGTCCAGAATTCGTTTTTTTTGGCATAAA--GTCTAAATTTTTATGTCAATATATCGT-----------------------------------------------------------------------------CCTCTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.............................................................................................................TTTTGGCATAAA--GTCTAAATTTTTATG......................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................TCCAGAATTCGTTTTTTTTGGCATATT--.....................................................................................................................................................................................................................................................................................27110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................TCCAGAATTCGTTTTTTTTG..............................................................................................................................................................................................................................................................................................20110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................CCAGAATTCGTTTTTTTTGGCAT..........................................................................................................................................................................................................................................................................................23120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................AATTCGTTTTTTTTGGCATAAA--GTC..................................................................................................................................................................................................................................................................................25120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CGTTTTTTTTGGCATAAA--GTCT.................................................................................................................................................................................................................................................................................22120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TCGTTTTTTTTGGCATAAA--GTCTAAAT.............................................................................................................................................................................................................................................................................27120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................ATTCGTTTTTTTTGGCATAAA--.....................................................................................................................................................................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TCGTTTTTTTTGGCATAAA--GTC..................................................................................................................................................................................................................................................................................22120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................AGAATTCGTTTTTTTTGGCA...........................................................................................................................................................................................................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................TCGTTTTTTTTGGCATAAA--GT...................................................................................................................................................................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTCGTTTTTTTTGGCATAAA--GTCTAAT..............................................................................................................................................................................................................................................................................27120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................ATTCGTTTTTTTTGGCATAAA--GTC..................................................................................................................................................................................................................................................................................24120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................GTTTTTTTTGGCATAAA--GT...................................................................................................................................................................................................................................................................................19120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TCGTTTTTTTTGGCATAAA--GTCTAA...............................................................................................................................................................................................................................................................................25120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTCGTTTTTTTTGGCATAAA--G....................................................................................................................................................................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................AATTCGTTTTTTTTGGCATAAA--GT...................................................................................................................................................................................................................................................................................24120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................AATTCGTTTTTTTTGGCATA.........................................................................................................................................................................................................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................AGAATTCGTTTTTTTTGGCATAAA--G....................................................................................................................................................................................................................................................................................25120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................ATTCGTTTTTTTTGGCATAAA--G....................................................................................................................................................................................................................................................................................22120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................TTCGTTTTTTTTGGCATAAA--GT...................................................................................................................................................................................................................................................................................22120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................GTTTTTTTTGGCATAAA--GTCTAAATT............................................................................................................................................................................................................................................................................26120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................CA-C--TATGGTCCAGAATTCGTTTTTTTT...............................................................................................................................................................................................................................................................................................27130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TTTTATGTCAATATATCGT-----------------------------------------------------------------------------CCTCTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------26140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................C--TATGGTCCAGAATTCGTTTTTTTT...............................................................................................................................................................................................................................................................................................25140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................TATGTCAATATATCGT-----------------------------------------------------------------------------CCTCTA.......................................................................................................................................................................22140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AAATTTTTATGTCAATATATCGT-----------------------------------------------------------------------------CCTC.........................................................................................................................................................................27140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TGCA-C--TATGGTCCAGAATTCGTTTTTA.................................................................................................................................................................................................................................................................................................27140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TGTCAATATATCGT-----------------------------------------------------------------------------CCTCTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------21140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................TGCA-C--TATGGTCCAGAATTCGC......................................................................................................................................................................................................................................................................................................22150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
droEre2
GTCGA------------------------------------------------------------------------CTAGTGTAAATCTACTGGC-----AAAA-TTTTTTTGTCACAAA--TTATCAAT----------------------GCCATAACAATAAAATGTGTGAAGTTTGAACCA--TGTAACTCAATTTTTCGACTTTATGCCAAAA-AAATCGAATTCTGGACCACAGTGCAAACGATA---------------------------GAA-ATT-------------------------------------------------------------------------------------------------------T----AAAAGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TCGCAT------------------------------------------------------------------------------------------------------TTTTTTTCACAAA--TTATCAAT----------------------GCTATAACAATAAAATGTGTGAAGTTTAAACCA--TGTAACTCAATTTTTCGACTTTATGCCCAA--AAATCTAATTCTGGACCATAGTGCAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................TATGCCCAA--AAATCTAATTCTGGACCA..................................................................................................................................................................2730.33101000000000
..................................................................................................................................................................................TTAAACCA--TGTAACTCAATTTTTCGAC.................................................................................................................................................................................................2790.33302100000000
...............................................................................................................................................................................................................TTTATGCCCAA--AAATCTAATTCTGGACC...................................................................................................................................................................2830.33100100000000
.............................................................................................................................................................................................GTAACTCAATTTTTCGACTTTATGCC.........................................................................................................................................................................................2670.29202000000000
..................................................................................................................................T----------------------GCTATAACAATAAAATGTGTGAAG...............................................................................................................................................................................................................................2560.17101000000000
..............................................................................................................................TCAAT----------------------GCTATAACAATAAAATGTGT...................................................................................................................................................................................................................................2560.17101000000000
..................................................................................................................................................................................................TCAATTTTTCGACTTTATGCCCA.......................................................................................................................................................................................2370.14101000000000
............................................................................................................................................................................................TGTAACTCAATTTTTCGACTTTATGCC.........................................................................................................................................................................................2770.14101000000000
...................................................................................................................................................................................................CAATTTTTCGACTTTATGCCCAA--AAATC...............................................................................................................................................................................2870.14101000000000
..............................................................................................................................................................................................TAACTCAATTTTTCGACTTTATGCC.........................................................................................................................................................................................2570.14100100000000
..................................................................................................................................................................................TTAAACCA--TGTAACTCAATTTTTCGACT................................................................................................................................................................................................2890.11100100000000
..................................................................................................................................................................................TTAAACCA--TGTAACTCAATTTTTCGACTT...............................................................................................................................................................................................2990.11101000000000
droEug1
GGAGCA-GCAAAAAGAAA----CATTCAATAGAATTACTCATACTTGGA--A------------AATCAAC-----------------------------------------------------------------------------------------------------------------------------------------TTGTGCCAATG-GAAACC----------------------------------TAC----AAAATCCTAATAAGAAACCTGCTAAAAACAAAA-------------------TGTGGCATAGCGTAAATTAACAAACAATTGAATAAT-----------------AATAATAATA-----------ATAATGASizeHit CountTotal NormTotal
No Reads
droBia1
GGAGCTAGCAT--TCATG----CCTG-----------CTGGAACGGTGA---ACTACCCAATTTCTT--------CACCAATTCA-C--TATGGTCCAGAACCCGTT-TTTTTGGCATAAA--GTCGA-TTTTTTATGTCAATATATCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAGTCT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTCAATTTTTAGAACTTATGCCAAAA-AAATCTACTTTTGGACCATAGTGCACTCTATA---------------------------A-----------GAT-----GAGCTACTCCGTGTTCTTGTTACGACAATTTATTCACTAAA-----------------------------------------------------CTAAATASizeHit CountTotal NormTotal
No Reads
droEle1
AGAGCA-GCAA--AGGAA----CATTCAATAGATTTACTCGTAATTGAATAA------------AAGCAAC--------------------------------------------------------------TTGTGCCAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AACTA--TTAT--AGAGA----TCTT-----------CGCGAA---------TCAAGTTGAGTT--------TGCTTCCGCTGCA-C--TATGGTCCAGAAGTCGATTTTTTTGGCATAAA--TACCAAATTTTTATGTTAATGTTTTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGAGCA-GCAA--AGGAA----CATTCAATAGATTTACTCATACTCGAA--A------------GAACAAC-----------------------------------------------------------------------------------------------------------------------------------------TTGTGCCAAAG-AAAACG----------------------------------TAAAAAACAAATCCTAAAGAGA-ACCTGCTAGAA-----A-------------------AGCGGCATAGCGTAATTAAAT-----------------------------------------------------AAATAAASizeHit CountTotal NormTotal
No Reads
droKik1
TAATGA-AGGA-----GA----ATTAGAATTAATTATTTCGTACAAT---------------TCAGTC-------AGCCAATGCA-C--TATGGTCCAGAATCCGTT-TTTTTGGCATAAA--GTCGATTTTTTTATGTTAATATATCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTAGGT-CTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTCTATTTTTAGAATTTATGCCAAAA-AAATCAACTTCTGGACCATAGTGCACTGTATA---------------------------TAA-CAT-------------------------------------------------------------------------------------------------------C----CGATATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................AAATCAACTTCTGGACCATAGTGC............................................................................................................................................................2490.898152000
............................................................................................................................................................................................................................AAATCAACTTCTGGACCATAGTGCA...........................................................................................................................................................2590.787610000
............................................................................................................................................................................................................................AAATCAACTTCTGGACCATAGT..............................................................................................................................................................2290.565140000
.........................................................................................................................................................................................................................AA-AAATCAACTTCTGGACCATAGTGCA...........................................................................................................................................................2790.111100000
.............................................................................................................................................................................................................................AATCAACTTCTGGACCATAGTGC............................................................................................................................................................2390.111100000
............................................................................................................................................................................................................................AAATCAACTTCTGGACCA..................................................................................................................................................................1890.111100000
.................................................................................................................................................................................................................TATGCCAAAA-AAATCAACTTCTGGACCA..................................................................................................................................................................2890.111100000
.......................................................................................................................................................................................................................AAAA-AAATCAACTTCTGGACCATAGTG.............................................................................................................................................................2790.111100000
........................................................................................................................................................................................................................AAA-AAATCAACTTCTGGACCATAGTGC............................................................................................................................................................2790.111100000
..................................................................................................................................................................................................................................ACTTCTGGACCATAGTGC............................................................................................................................................................1890.111010000
.............................................................................................................................................................................................................................AATCAACTTCTGGACCATA................................................................................................................................................................1990.111010000
droBip1
TTAT------------------------------------------------------------------------ACCCTTGCA-C--TATGGTCCAAAATTCGGATTTTTTGGCATAAA--GTCGAAATTTTTATGTTAATGTTTTGTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGTTTTAAATTCTTAAAG-----------------------------------------------------TTAATACSizeHit CountTotal NormTotal
No Reads
dp5
GCT----------------------------------------------------------------------------AGAGCA-C--TATGGTCCAGACTTCGTT-TTTTTGGCAGAAAAAACCGA-AATTTTATGAAAATACTCCA-------------AATAATTGTGCAAAGTTTCAAGGCTTTCTGGCTTTCAAACTAGACTTTATGCCAAAAAAAATCGTCTTCTGGACCATAGTGCAGAGTACG---------------------------AAA-AACA---------------------------------------------------------------AAAAC-----------------AATCTCTCTATG-----------AGCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................TAATTGTGCAAAGTTTCAAGGCT.....................................................................................................................................................................................................................2350.2010100000000
.........................................................................................................................................................................................................CTAGACTTTATGCCAAAAA....................................................................................................................................................................................1980.1310100000000
droPer2
CTTGT-----------------------------------------------------------------------ACCGCTTCA-C--TATGGTCCAGAATTCGTTTTTTTTGGCATAAA--GTCGAAATTTTTATGTGAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACAATTTTTAGACTTTATGCCAAAAAAAAACGAAGTCTGGACCAAAGTGCAGTGTGGACTGTAGCAAAA----TAAAACCAGATGAAA-ACCAG-----------------------------------------------------------------------------------------------------------AAATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................TTTTTAGACTTTATGCCAAA......................................................................................................................................................................................20200.05101000
droMoj3
AACTTT-AGAT-----------------------TT---------------------------------------AACCAGTGCA-C--TATGGTCCAGATTTCGTTTTTTTTGGCATAAA--GTCTATTTTTCGATGTTAATGAATCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................ATAAA--GTCTATTTTTCGATGTTAATGA...............................................................................................................................................................................................................................................................2740.502200000
....................................................................................................................ATAAA--GTCTATTTTTCGATGTTAATG................................................................................................................................................................................................................................................................2640.251100000
....................................................................................................................ATAAA--GTCTATTTTTCGATGTTAATGAA..............................................................................................................................................................................................................................................................2840.251100000
....................................................................................................................ATAAA--GTCTATTTTTCGATGTTAAT.................................................................................................................................................................................................................................................................2540.251100000
....................................................................................................................ATAAA--GTCTATTTTTCGATGTTAA..................................................................................................................................................................................................................................................................2440.251100000
.................................................................................TGCA-C--TATGGTCCAGATT..........................................................................................................................................................................................................................................................................................................1880.131100000
........................................................................................................GTTTTTTTTGGCATAAA--GTC..................................................................................................................................................................................................................................................................................20100.101100000
droGri2
GTAATA-ATAA--TAACAAATTCATTAACTAGATTTATTCTCACCTTG------------------TTTTC-----------------------------------------------------------------------------------------------------------------------------------------GTGTGCCAAAA-AAATGT------------------------------------------------------------------------------------------------GTT---------------------------------------------------------------------AGAGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:59 AM