ID:

dsi_11613

 Coordinate:

2l:262921-263166 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.8 -5.4

Flybase annnotation

exon [2l_263167_263334_-]; CDS [2l_263167_263334_-]; exon [2l_261742_262920_-]; CDS [2l_261742_262920_-]; intron [2l_262921_263166_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
star
  1. dsi_11613  2l:263091-263105 -
  2. x:20757470-20757484 +
  3. node_48475:18-32 -
  4. node_114382:107-121 +
  5. node_114382:3378-3392 +
  6. node_41298:519-533 -
  7. node_63203:33-47 -

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAGAAGACCTTCATGTCGTTGCCCACTCGAAAGGATGTAATCGACAAAGGTAAGGAGCGTCCGTCGAATTGGGTATCTATTCATCCGGTATTACTATGAACTTTGCCCAGTTGGAAGTTATTAGCCAGTGGCCAAGACTGGCTCTTTAATAAGAATCTTTTGGGTCCATGGCATTTCTGCATTTAAAAATATAAATTTGACCATGATATATTTATCTAGGATAGGAATTAAATAATTGTAAATATTTATCTAATTTATATAAATATTAATTTATGTATATATTTATATTCGGTAGCTCATAAATACGGCCTGTGCGGCAACACAATTGTCCTGGAGAGCAACGGC
**********************************************************************************............(((..((((((.........))))))..))).**************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
............................................................................................................................................................................................AATAAAAATTTGACCAAGAGATA....................................................................................................................................... 23 3 1 2.00 2 0 2 0 0 0 0 0 0 0
.......................................................GAGCGTCCGACGAAT.................................................................................................................................................................................................................................................................................... 15 1 1 2.00 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TAAATACGGCCTGTGCGGCAACACAA.................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................................................CATCCGGTATTACTATGAACTT.................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........TCATGTCGTTGCCCACTCGAAAGGA...................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...GAAGACCTTCATGTCGTTGCC.................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................GCCTGTGCGGTAACGCAA.................... 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................CCCAGTTGGAAGTTATTAGCC........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................TGTCCTGGAGAGCAACGGC 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................ATCCGGTATTACTATGAACTTTGCCC............................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................GTCCGTCTAATTGGG................................................................................................................................................................................................................................................................................ 15 1 2 0.50 1 1 0 0 0 0 0 0 0 0
........................CACTAGAAAGGATGT................................................................................................................................................................................................................................................................................................................... 15 1 3 0.33 1 0 0 0 0 0 0 1 0 0
........................................................................................GTATTACTATCAACACTGCCC............................................................................................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0
...............................................................................................................TTGGAAGTTATTAGC............................................................................................................................................................................................................................ 15 0 7 0.14 1 0 0 0 0 0 0 1 0 0
.....................................................TAGAGCGTCCGACGAATT................................................................................................................................................................................................................................................................................... 18 3 20 0.10 2 2 0 0 0 0 0 0 0 0
..........................................................CGTTCGTCTACTTGGGTAT............................................................................................................................................................................................................................................................................. 19 3 13 0.08 1 0 1 0 0 0 0 0 0 0
................................................................................................................................GTGGCCAAGACTGGA........................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1
........................................................................................................................ATTAGCTAGTGGGCAAAAC............................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0
........................................................AGCGTCCGACGAATTC.................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTTCTTCTGGAAGTACAGCAACGGGTGAGCTTTCCTACATTAGCTGTTTCCATTCCTCGCAGGCAGCTTAACCCATAGATAAGTAGGCCATAATGATACTTGAAACGGGTCAACCTTCAATAATCGGTCACCGGTTCTGACCGAGAAATTATTCTTAGAAAACCCAGGTACCGTAAAGACGTAAATTTTTATATTTAAACTGGTACTATATAAATAGATCCTATCCTTAATTTATTAACATTTATAAATAGATTAAATATATTTATAATTAAATACATATATAAATATAAGCCATCGAGTATTTATGCCGGACACGCCGTTGTGTTAACAGGACCTCTCGTTGCCG
****************************************************************************************************************************************************************************************************************************............(((..((((((.........))))))..))).********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
..........................................................................ACAGATAAGTGGGCTATAATGAT......................................................................................................................................................................................................................................................... 23 3 1 6.00 6 6 0 0 0 0
.................................................................................AGTAGGCCATAATGG.......................................................................................................................................................................................................................................................... 15 1 3 2.33 7 0 7 0 0 0
..........................................................................ACAGATAAGTGGGCTATAATGA.......................................................................................................................................................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0
.......................................................................................................................................................................................................................................................................................................CGAGTATTTGTGGCGGACA................................ 19 2 1 1.00 1 0 0 1 0 0
.......................................................CTCGCAGGCAGCTTAACCCAT.............................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0
..................................................................................................................................................................................................................................................................................................................................TGTTACCAGGCCCTCTCG...... 18 2 2 0.50 1 0 0 0 0 1
.....................................................................................................................................................................................................................................................................................................ATCGTGTATTTATGACGGACACT.............................. 23 3 2 0.50 1 0 0 1 0 0
................................................................................TAGTAGGCCATAATG........................................................................................................................................................................................................................................................... 15 1 3 0.33 1 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................ATCGAGTATTTTTGCCCGACACT.............................. 23 3 4 0.25 1 0 0 1 0 0
................................................................................CAGTAGGCCATAATG........................................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 1 0 0 0
........................................................................CCAAAGAAAAGGAGGCCATAA............................................................................................................................................................................................................................................................. 21 3 9 0.11 1 0 0 0 1 0
.................................................................................AGTAGGCCATAATGGG......................................................................................................................................................................................................................................................... 16 2 20 0.10 2 0 2 0 0 0
..................................................................................GTAGGCCATAATGGG......................................................................................................................................................................................................................................................... 15 2 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:262871-263216 - dsi_11613 CAAGAAGACCTTCATGTCGTT--GCCCACTCGAAAGGATGTAATCGACAAAGGTAAGGAG-CGTCCGTCGAATTGGGTA-TCTATTCATCCGGTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-TATGAACTTTGCCCAGTTG-G---AAGTTATT------A----GCCAGT-------------------------------------------------GGCCAAGA--------CTGGC----------------------------------------------------------------------------------TCTTTAATAAGAAT-CTTTTG-GGTCCATG------GCATTTCT-----------GCAT--TTAAAAATAT--AAATTTGACC-----A------------TGATATATTTAT----CTAGGATAGGA------------A---TTAAATAA---TTGTAAATATT-TATCTAATT-----------------------------TATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTAAT------TTATGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTT-----------ATATTCGGTAGCTCATAAATACGGCCTGTGCGGCAACACAATTGTCCTGGAGAGCAACGGC
droSec2 scaffold_14:274286-274632 - CAAGAAGACCTTCATGTCGTT--GCCCACTCGAAAGGATGTAATCGACAAAGGTAAGGAG-CGTCCGTCGAATTGGGTA-TCTATTAATCCGGTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-TATGAACTTTGCCCAGTTG-G---AAGTTATT------A----GCCAGT-------------------------------------------------GGCCAAGA--------CTGGC----------------------------------------------------------------------------------TCTTTAATAAGAAT-CTTTTG-GGTCCATG------GCATTTCT-----------GCAT--TTAAAAATAT--AAATTTGACC-----A------------TGATATATTTAT----CTAGGATAGGA------------A---TTAAATAA---TTGTAAATATTTTATCTAATT-----------------------------TATATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTAAT------TTATGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTT-----------ATATTCGGTAGCTCATAAATACGGCCTGTGCGGCAACACAATTGTCCTGGAGAGCAACGGC
dm3 chr2L:276448-276788 - CAAGAAGACCTTCATGTCGTT--GCCCACTCGAAAGGATGTAATCGACAAAGGTAAGGAA-CGTCCGACGAATTGGGTA-TCTATTCATCCAGTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAATGAACGTTGCCCAGTTG-G---AAGTTATT------A----ACCAGT-------------------------------------------------AG-----A--------CAG------------------------------------------------------------------------------------TCTTTAATAAGAAT-CTATTG-GGTTTAAGCTTAGAGCATTTCT-----------GCAT--TTAAAAATAT--AAATTTGATCAATGGG------------TGATATATTTAT----CTAGGATAGAA------------A---TTAAATAA---TTGTACATATTTTATTTAATT-----------------------------TATATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA-----------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTT-----------GTATTCGGTAGCTCACAAATACGGCCTGTGCGGCAACACAATTGTCCTGGAGAGCAACGGC
droEre2 scaffold_4929:327588-327975 - CAAGAAGACCTTCATGTCGCT--GCCCACTCGAAAGGATGTAATCGACAAAGGTAAGGAA-CGCCCAACGAATTGGGTA-TCTATTCCTTCAGTAATAGATCA----CTCG----------------------------------------------------------------------------------------------------------------------------------------------------TA-------------------CGAATCCACTTTGCCCAGTTG-G---AACTTATA------A----ACCAGT-------------------------------------------------AA-----------------------------------------------------------------------------------------ATTCAAAACTCTTCTTTAATAAGAAT-TAT-TGTGGCTCATGCTTTAAACAT---------------G-AT--GTTAAAATAG--ATACTTAACCTATGAA------------TGATATATTTAT----ACCAGATACCACAATTATACCAGA---TTAAATAATAATTTTAAATATTT-A--CAATT-----------------------------TATATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGATACATATTAAC----------GT--AT-------TATC-ATTTAACACTTGGTAGCTCACAAATACGGTCTGTGCGGCAACACAATTGTCCTGGAGAGCAATGGC
droYak3 2L:270614-270960 - CAAGAAGACCTTCATGTCGTT--GCCCACTCGGAAGGATGTAATCGACAAAGGTAAGGAA-CGCCCAACGAATTGGGTA-TATACTCCTTCAGTAATAGATCA----AGTG----------------------------------------------------------------------------------------------------------------------------------------------------TA-------------------CAAACCCACTTTGCCCAGTTG-G---AACTCATT------A----AGCAGT-------------------------------------------------GA-----------------------------------------------------------------------------------------ATTCGAAACTAT-------------T-CTTTTG-GATTCAAGCTTTGAGTAT---------------G-ATTAAT-------T--ATACTTGGTCTATGAA------------TGATTTATTGAA----CTAGAATATGA------------C---TTAAATAATAATTTTAAAAAT------CAATT-----------------------------TATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGATTTATAATAAC----------AT--CT-------TACC---TTAACACTCGGCAGCTCACAAATATGGCCTGTGCGGCAACACAATCGTCCTGGAGAGCAACGGC
droEug1 scf7180000409461:540972-541293 + CAAAAAGACTTTCATGTCCTT--GCCCACACGAAAGGATGTGATCGAAAAGGGTAAGAAA-TGCATGTCGAATTGGACAAGAATTT----------------AATAC-------TTAAACACTTTCGGATATGTAAAAAAG----------------------------------------------------------------------------------------------------------------------TACC----------------TTAAGTCAGTTTTGTCCAGTTG-G---AATATATA------TGTAAACCAAAAAGTTTAATGCCAATATCTTTAATTGAAATCTATCTTCTCTGCTTCAATAGCCGATA--------TTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TGTTTT-----------------------------TATTTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-TTTAATAATATA------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTT----TT-----TACCTTGGTAGCCCAAAAATACGGTATGTGCGGCAGTACGATTGTCTTAGAGAGCAACGGT
droBia1 scf7180000302261:3562520-3562897 + CAAGAAGACCTTCATGTCCTT--GCCCACGCGAAAGGATGTGATCGAAAAGGGTGAGGAG-CTAGG-----------GAGTGCATTG----------------------------------------------------AGTTTTGGAATT---------------------------------------------------------------------------------------------------------------------------------T-GATGCATTTTGCCCAGTTG-G---A-CTTATT------A----ACTAGA-------------------------------------------------AA------ACTAAA-G---GA----------------------------------------------------------------------------------TTTCTTAGAACATT-TTATTG-GTTCC--------------------TTTTTGAG---T----------------------------------------------------------------------------------------------------CA-----------A-----------------------------TATTTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCATAAA------TATT-TATATTTTTTCCAATATAAAAACTACAAAGTGTAACTTTAAAAAGGACACCAATTTACTGCACTGCACAGCTTAAAAATTTAAACATTAAATTCGAATGTAAAAG--------------------------------------------------------------------TGTGTAC--------TAAT----ACACTTTCTT-----C-----GCCCTATGTAGCCCACAAATACGGTCTGTGTGGCAGCACAATTGTCCTGGAGAGTAACGGC
droTak1 scf7180000413017:248742-248907 + CAAGAAGACCTTCATGTCCTT--GCCCACGCGGAAGGATGTGATCGATAAGGGTAAGGAA------------TTGGGCAGGACTTT----------------AATTAAT-----TTAAATATTTT--------TAAAGGGGTTTAGACAGTTGATACATTGTATTTA-----------------------------------------------------------------------------------------------------------GAGAAAT-CATCAAATTTGCCCAGTTG-G---AATTCATT------A----GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGT
droEle1 scf7180000490454:89145-89596 + CAAGAAGACTTTTATGTCCTT--ACCCACGCGAATGGATGTAATCGAAAAGGGTAAGAAA-TTTTAGCCAATAAAGGCG-TACTTTAATTAAACAGT---------------------------------------------------------------------------------------ACAACCATCATATCGAAAATTACCAAAATCAATTAAATATTTGGAACCAATTGGAATTCGGTAATCCAAATATGGCA--CGAATGTTGTTTAAAAAT-A-----------AAAATAAGGAAAT-CTTAGTTATTCAG----TTTAGA-------------------------------------------------AA------ACCAAATG---GAACTCTGTAAATTGGTTAATTATTAATAATTAAACAATTTAATAATAGATCAAAATTAATTAAATTTGTGACTTTAAAACTCGCCTA-------------------------AGTCAAAA--------------------ATTAAC-------T--TCAATTAAACTATACA------------TGTTTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAAGCAAAT--------------------------------------------------------------------------------------------------------ACAT----------TATGACAA--T-------TCCTC---TCTCCCCTTGTTAGCCCACAAATACGGCCTTTGTGGCAGCACGATTGTCCTGGAGAGCAACGGC
droRho1 scf7180000779917:395749-396032 + CAAGAAGACCTTTATGTCCTT--TCCGACGCGAATGGATGTGATCGAGAAAGGTAGGAAA-CT--CATCGAATTAAATAAA----GCTTTCAGTGATTGATTAAAAACTTGTTA----------------------------------------------CGATCCTTTAATTACTTAAATAGTAAAGCCATCATTTCGAATCTTACTAACTTTATTTAATT----------------------------------------------------------------------------CTG-G---AACCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAA---TTGCAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGAAGAG-------------------------------AAAAATCTTT-----------------------------------------------------------------------------TAAT----TCAATTACTC-----T-----TCTCTTTCTAGCCCAAAAATACGGCCTTTGTGGCAGCACGATTGTTCTGGAGAGCAACGGC
droFic1 scf7180000453904:550023-550327 - CAAAAAGACCTTTATGTCCTT--GCCCATGCGGAAGGACGTGATCGAGAAGGGTAAGAATTCGTCCG--GAACTGGGTAATACATT----------------AATACTTCTTGA----------------------------------------------GGATCCA-----------------------------------------------------------------------------------------------------------CGAACAG-CATTAATTTTACCAACTTG-G---ACTTAATT------G-----T--GA-------------------------------------------------AA------ACTA--------------------------------------------------------------------------------------------------------------AGTTTGTCCACCTCAAAC-ATTGGTTACTTTTTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGGGTGTAAACCAAACCCCCATCTTAATAAG-TTGCATTAAAAA------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA----TTATTTTCTT-----T-----TCCACCGGCAGCCCACAAATACGGCTTGTGCGGCAGCACGATTGTCCTGGAGAGCAACGGC
droKik1 scf7180000302401:598223-598407 - ATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-----------AAAT--TTAAAAATATCTAAATCTAAAA-----AAGTATCTGGTATTAATATCTTAAT----CTAAAAAAGTA------------TCTGTTAGATAA---ATACAATTATTTATGGCAAAT-----------------------------AATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA--AAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCC----TTT---TCATCTAATATTAGCCCACAAATACGGCCTTGTCGGCAGTACAATTGTCCTGGAGAGCAACGGC
droAna3 scaffold_12943:1525908-1526338 + CAAGAAGACTTTCATGTCCTT--TCCCACGCGAAAGGATGTGATTGAAAAGGGTAAGTAC-ATATG---GAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATTTATTATGACTACTGAGTGCTGA-TTTTGTTTATAAGCCAGTCGGATGTTTATTTATTTTTCAATTTGTCACTTGAGGA------GAGAATTCGATTCATGTTATTGTTTTCATATATCGAGCAACGTAGGCGGTAAAGATTTTGTTTATTTTGATTCACTGCACCTTACTTGAAATTATCCATT------------------------------------------------------------------------------------------------------------TATATTGCACTGCAATT-------------------------------------TACTTTTTTTCATATGAGGGTTATATTTTAAACAAGAATATTTAATTTTTTCCCAGATATATGAGACATTTAAGAACCCTTTATGCAAATCACTTACGT----T---CCTTTTTTTTCTAGCACACAAATATGGTCTTTCCGGAAGTACGATTGTCCTGGAGAGCAATGGC
droBip1 scf7180000396728:1676199-1676564 - CAAGAAGACATTCATGTCCTT--TCCTACGCGAAAGGATGTGGTTGAAAAGGGTAAGTCA-ATATC---AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATTAATTCTTATTTATCAGTGTTGAATTTTCATTAAAAACTAGTTGGATGATTATTTATTTTTCGATTCGTCACTTGAGACAATACCTAGAATACTATTATTGTTATTAATTTCAAATTTCGAGCAACGTAGGCGCC-ATGCTTTTGTTTATTTTGATTCAGTGCACTTCCTCTGAAATCGTCTATG------------------------------------------------------------------------------------------------------------TTTATTGCACTGTAATT-------------------------------AAAGTTTACT-----------------------------------------------------------------------------TTAT----ATATTTATTTTCCTT---TTTATAAATTTTAGCTCACAAATATGGGCTAGCTGGAAGTACGATTGTCCTAGAAAGCAATGGC
dp5 4_group1:4307806-4307918 + TAAGTAAT-------------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCTTAA-----------------------------ATTTATATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-ATTAATTAAATA------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGT-----------GCATTTATTAGCCCACAAGTATGGCCTAGCCGGCAACACCATTGTCCTGGAGAGCAATGGC
droPer2 scaffold_5:902727-902839 - TAAGTAAT-------------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCTTAA-----------------------------ATTTATATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-ATTAATTAAATA------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGT-----------GCATTTATTAGCCCACAAGTATGGCCTAGCCGGCAACACCATTGTCCTGGAGAGCAATGGC
droWil2 scf2_1100000004851:217524-217639 - ATT--------------------TAT---------------------TGAGGGTAGCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---TAG-------T-TTTTTC-----------------------------TTTTCTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT---TCAATAATGTATAGCACACAAATATGGCCTAACTGGTAACAACATTGTCCTGGAGAGCAATGGT
droVir3 scaffold_12963:8804405-8804520 + ATT--------------------GGCTATGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------A---TTAAACAA---TT-------TTTAAATTAATT-----------------------------TAAATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTA------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTC---TC-ATGCCTTTTAGCACATAAATATGGCTTGGCTGGCAGTACCATAGTGCTGGAGAGCAATGGC
droMoj3 scaffold_6500:2522776-2522877 - TGAATCGTTACTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------TATTTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATTAT------TTTTGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTTCATAGCACACAAATACGGCTTGGCTGGAAGTACCATAGTACTGGAAAGCAATGGC
droGri2 scaffold_15252:12981573-12981984 - CAAAAAGACATTCATGTCCTT--GCCCAGCAGAAAGGATGTTATAGAAAAAGGTATGTGT----GCTACG-------CTGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCCTCAAATTCATTTTTCGGG--GAAATGCTGTACGAACTT-A-----------AAAATTT-G---A-----------------------------------------------------------------------------------------CTT------------------------------------------------------------------------------------ATTTTTTTAAATATATAT-AGTTTTTCAAGCTCAAAA-ATTTGA-----------G-TT--TTTTAAATAT--ACATTTATTTCAATAT------------TTATATATACATATTTATTAGATACCTGGAAAACATTGCA---TTCATTAAATTTGTAAAGTATTT-A----------------------------------------TT----------------------------------------------------------TGAAATTGTTTTTATTAAAATCAAAAT---------------------------------------------------------------GTTTGCATATCCCAGCGCAAACTGTATTCTCATATTCCCAAA-ATCAACTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTATTT-----T-----CATCATCTTAGCACACAAATACGGCTTGTTGGGCAGCACCATTGTGCTCGAGAGCAATGGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAAGAAGACCTTCATGTCGTT--GCCCACTCGAAAGGATGTAATCGACAAAGGTAAGGAG-CGTCCGTCGAATTGGGTA-TCTATTCATCCGGTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-TATGAACTTTGCCCAGTTG-G---AAGTTATT------A----GCCAGT-------------------------------------------------GGCCAAGA--------CTGGC----------------------------------------------------------------------------------TCTTTAATAAGAAT-CTTTTG-GGTCCATG------GCATTTCT-----------GCAT--TTAAAAATAT--AAATTTGACC-----A------------TGATATATTTAT----CTAGGATAGGA------------A---TTAAATAA---TTGTAAATATT-TATCTAATT-----------------------------TATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTAAT------TTATGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTT-----------ATATTCGGTAGCTCATAAATACGGCCTGTGCGGCAACACAATTGTCCTGGAGAGCAACGGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATACGGCCTGTGCGGCAACACAA....................2611.00100000000000010000
......................................................................................CATCCGGTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-TATGAACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
...........TCATGTCGTT--GCCCACTCGAAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
...GAAGACCTTCATGTCGTT--GCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
.....................................................................................................................................................................................................................................................................................................CCCAGTTG-G---AAGTTATT------A----GCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCTGGAGAGCAACGGC1911.00100000000010000000
.......................................................................................ATCCGGTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-TATGAACTTTGCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
..........................................................................................................................................................................................................................................................................................................TTG-G---AAGTTATT------A----GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1570.14100000000001000000
.........................................................................................................................................................................................................................................................................................................................................GT-------------------------------------------------GGCCAAGA--------CTGGA----------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000010000000000
droSec2
CAAGAAGACCTTCATGTCGTT--GCCCACTCGAAAGGATGTAATCGACAAAGGTAAGGAG-CGTCCGTCGAATTGGGTA-TCTATTAATCCGGTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-TATGAACTTTGCCCAGTTG-G---AAGTTATT------A----GCCAGT-------------------------------------------------GGCCAAGA--------CTGGC----------------------------------------------------------------------------------TCTTTAATAAGAAT-CTTTTG-GGTCCATG------GCATTTCT-----------GCAT--TTAAAAATAT--AAATTTGACC-----A------------TGATATATTTAT----CTAGGATAGGA------------A---TTAAATAA---TTGTAAATATTTTATCTAATT-----------------------------TATATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTAAT------TTATGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTT-----------ATATTCGGTAGCTCATAAATACGGCCTGTGCGGCAACACAATTGTCCTGGAGAGCAACGGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............GTCGTT--GCCCACTCGAAAGGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
dm3
CAAGAAGACCTTCATGTCGTT--GCCCACTCGAAAGGATGTAATCGACAAAGGTAAGGAA-CGTCCGACGAATTGGGTA-TCTATTCATCCAGTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAATGAACGTTGCCCAGTTG-G---AAGTTATT------A----ACCAGT-------------------------------------------------AG-----A--------CAG------------------------------------------------------------------------------------TCTTTAATAAGAAT-CTATTG-GGTTTAAGCTTAGAGCATTTCT-----------GCAT--TTAAAAATAT--AAATTTGATCAATGGG------------TGATATATTTAT----CTAGGATAGAA------------A---TTAAATAA---TTGTACATATTTTATTTAATT-----------------------------TATATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA-----------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTT-----------GTATTCGGTAGCTCACAAATACGGCCTGTGCGGCAACACAATTGTCCTGGAGAGCAACGGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................GTT--GCCCACTCGAAAGGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003
.AAGAAGACCTTCATGTCGTT--GCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACGGCCTGTGCGGCA..........................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
..............TGTCGTT--GCCCACTCGAAAGGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCCCACTCGAAAGGATGTAATCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................CCCACTCGAAAGGATGTAATCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CCACTCGAAAGGATGTAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAATTGTCCTGGAGAGC......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGCCTGTGCGGCAACACAA....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAATACGGCCTGTGCGGCAACACAAT...................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCACAAATACGGCCTGTGCGGCA..........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CTTCATGTCGTT--GCCCACTCGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CGTT--GCCCACTCGAAAGGATGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAATTGTCCTGGAGAGC......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGTGCGGCAACACA.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TTCATGTCGTT--GCCCACTCGAAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGGAGAGCAACGGC1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GAAGACCTTCATGTCGTT--GCCCACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGCGGCAACACAATTGT................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................................ATCGACAAAGGTAAGGAA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA-----------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTT-----------GTATTCGGTAG..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAATACGGCCTGTGCGGCAACACA.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................T--GCCCACTCGAAAGGATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CACTCGAAAGGATGTAATCGACAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATGTCGTT--GCCCACTCGAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......ACCTTCATGTCGTT--GCCCACTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACCTTCATGTCGTT--GCCCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................AGGATGTAATCGACAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACACAATTGTCCTGGAGAGC......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCCCACTCGAAAGGATGTAATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACGGCCTGTGCGGCAACACAAT...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TCGTT--GCCCACTCGAAAGGATGTAATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACAAATACGGCCTGTGCGGCA..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................T--GCCCACTCGAAAGGATGTAATCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAATGGG------------TGATTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAAATACGGCCTGTGCGGCAACA.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................T--GCCCACTCGAAAGGATGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GACAAAGGTAAGGAA-CGTCCGACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................GTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAATGAACGTTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGATCAATGGG------------TGATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCCCACTCGAAAGGATGTAATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATACGGCCTGTGCGGCAACAC......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CATGTCGTT--GCCCACTCGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TCGAAAGGATGTAATCGACAAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TT--GCCCACTCGAAAGGATGTAATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCACAAATACGGCCTGTGCGGCAA.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAAGAAGACCTTCATGTCGCT--GCCCACTCGAAAGGATGTAATCGACAAAGGTAAGGAA-CGCCCAACGAATTGGGTA-TCTATTCCTTCAGTAATAGATCA----CTCG----------------------------------------------------------------------------------------------------------------------------------------------------TA-------------------CGAATCCACTTTGCCCAGTTG-G---AACTTATA------A----ACCAGT-------------------------------------------------AA-----------------------------------------------------------------------------------------ATTCAAAACTCTTCTTTAATAAGAAT-TAT-TGTGGCTCATGCTTTAAACAT---------------G-AT--GTTAAAATAG--ATACTTAACCTATGAA------------TGATATATTTAT----ACCAGATACCACAATTATACCAGA---TTAAATAATAATTTTAAATATTT-A--CAATT-----------------------------TATATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGATACATATTAAC----------GT--AT-------TATC-ATTTAACACTTGGTAGCTCACAAATACGGTCTGTGCGGCAACACAATTGTCCTGGAGAGCAATGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAATTGTCCTGGAGAGC......2011.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAA------------TGATATATTTAG----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
................TCGCT--GCCCACTCGAAAGGATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACGGTCTGTGCGGCA..........................1811.0011000000
droYak3
CAAGAAGACCTTCATGTCGTT--GCCCACTCGGAAGGATGTAATCGACAAAGGTAAGGAA-CGCCCAACGAATTGGGTA-TATACTCCTTCAGTAATAGATCA----AGTG----------------------------------------------------------------------------------------------------------------------------------------------------TA-------------------CAAACCCACTTTGCCCAGTTG-G---AACTCATT------A----AGCAGT-------------------------------------------------GA-----------------------------------------------------------------------------------------ATTCGAAACTAT-------------T-CTTTTG-GATTCAAGCTTTGAGTAT---------------G-ATTAAT-------T--ATACTTGGTCTATGAA------------TGATTTATTGAA----CTAGAATATGA------------C---TTAAATAATAATTTTAAAAAT------CAATT-----------------------------TATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGATTTATAATAAC----------AT--CT-------TACC---TTAACACTCGGCAGCTCACAAATATGGCCTGTGCGGCAACACAATCGTCCTGGAGAGCAACGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAATCGTCCTGGAGAGC......2111.00100100000000
....................T--GCCCACTCGGAAGGATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
droEug1
CAAAAAGACTTTCATGTCCTT--GCCCACACGAAAGGATGTGATCGAAAAGGGTAAGAAA-TGCATGTCGAATTGGACAAGAATTT----------------AATAC-------TTAAACACTTTCGGATATGTAAAAAAG----------------------------------------------------------------------------------------------------------------------TACC----------------TTAAGTCAGTTTTGTCCAGTTG-G---AATATATA------TGTAAACCAAAAAGTTTAATGCCAATATCTTTAATTGAAATCTATCTTCTCTGCTTCAATAGCCGATA--------TTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TGTTTT-----------------------------TATTTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-TTTAATAATATA------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTT----TT-----TACCTTGGTAGCCCAAAAATACGGTATGTGCGGCAGTACGATTGTCTTAGAGAGCAACGGTSizeHit CountTotal NormTotal
No Reads
droBia1
CAAGAAGACCTTCATGTCCTT--GCCCACGCGAAAGGATGTGATCGAAAAGGGTGAGGAG-CTAGG-----------GAGTGCATTG----------------------------------------------------AGTTTTGGAATT---------------------------------------------------------------------------------------------------------------------------------T-GATGCATTTTGCCCAGTTG-G---A-CTTATT------A----ACTAGA-------------------------------------------------AA------ACTAAA-G---GA----------------------------------------------------------------------------------TTTCTTAGAACATT-TTATTG-GTTCC--------------------TTTTTGAG---T----------------------------------------------------------------------------------------------------CA-----------A-----------------------------TATTTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCATAAA------TATT-TATATTTTTTCCAATATAAAAACTACAAAGTGTAACTTTAAAAAGGACACCAATTTACTGCACTGCACAGCTTAAAAATTTAAACATTAAATTCGAATGTAAAAG--------------------------------------------------------------------TGTGTAC--------TAAT----ACACTTTCTT-----C-----GCCCTATGTAGCCCACAAATACGGTCTGTGTGGCAGCACAATTGTCCTGGAGAGTAACGGCSizeHit CountTotal NormTotal
No Reads
droTak1
CAAGAAGACCTTCATGTCCTT--GCCCACGCGGAAGGATGTGATCGATAAGGGTAAGGAA------------TTGGGCAGGACTTT----------------AATTAAT-----TTAAATATTTT--------TAAAGGGGTTTAGACAGTTGATACATTGTATTTA-----------------------------------------------------------------------------------------------------------GAGAAAT-CATCAAATTTGCCCAGTTG-G---AATTCATT------A----GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTSizeHit CountTotal NormTotal
No Reads
droEle1
CAAGAAGACTTTTATGTCCTT--ACCCACGCGAATGGATGTAATCGAAAAGGGTAAGAAA-TTTTAGCCAATAAAGGCG-TACTTTAATTAAACAGT---------------------------------------------------------------------------------------ACAACCATCATATCGAAAATTACCAAAATCAATTAAATATTTGGAACCAATTGGAATTCGGTAATCCAAATATGGCA--CGAATGTTGTTTAAAAAT-A-----------AAAATAAGGAAAT-CTTAGTTATTCAG----TTTAGA-------------------------------------------------AA------ACCAAATG---GAACTCTGTAAATTGGTTAATTATTAATAATTAAACAATTTAATAATAGATCAAAATTAATTAAATTTGTGACTTTAAAACTCGCCTA-------------------------AGTCAAAA--------------------ATTAAC-------T--TCAATTAAACTATACA------------TGTTTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAAGCAAAT--------------------------------------------------------------------------------------------------------ACAT----------TATGACAA--T-------TCCTC---TCTCCCCTTGTTAGCCCACAAATACGGCCTTTGTGGCAGCACGATTGTCCTGGAGAGCAACGGCSizeHit CountTotal NormTotal
No Reads
droRho1
CAAGAAGACCTTTATGTCCTT--TCCGACGCGAATGGATGTGATCGAGAAAGGTAGGAAA-CT--CATCGAATTAAATAAA----GCTTTCAGTGATTGATTAAAAACTTGTTA----------------------------------------------CGATCCTTTAATTACTTAAATAGTAAAGCCATCATTTCGAATCTTACTAACTTTATTTAATT----------------------------------------------------------------------------CTG-G---AACCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAA---TTGCAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGAAGAG-------------------------------AAAAATCTTT-----------------------------------------------------------------------------TAAT----TCAATTACTC-----T-----TCTCTTTCTAGCCCAAAAATACGGCCTTTGTGGCAGCACGATTGTTCTGGAGAGCAACGGCSizeHit CountTotal NormTotal
No Reads
droFic1
CAAAAAGACCTTTATGTCCTT--GCCCATGCGGAAGGACGTGATCGAGAAGGGTAAGAATTCGTCCG--GAACTGGGTAATACATT----------------AATACTTCTTGA----------------------------------------------GGATCCA-----------------------------------------------------------------------------------------------------------CGAACAG-CATTAATTTTACCAACTTG-G---ACTTAATT------G-----T--GA-------------------------------------------------AA------ACTA--------------------------------------------------------------------------------------------------------------AGTTTGTCCACCTCAAAC-ATTGGTTACTTTTTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGGGTGTAAACCAAACCCCCATCTTAATAAG-TTGCATTAAAAA------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA----TTATTTTCTT-----T-----TCCACCGGCAGCCCACAAATACGGCTTGTGCGGCAGCACGATTGTCCTGGAGAGCAACGGCSizeHit CountTotal NormTotal
No Reads
droKik1
ATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-----------AAAT--TTAAAAATATCTAAATCTAAAA-----AAGTATCTGGTATTAATATCTTAAT----CTAAAAAAGTA------------TCTGTTAGATAA---ATACAATTATTTATGGCAAAT-----------------------------AATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA--AAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCC----TTT---TCATCTAATATTAGCCCACAAATACGGCCTTGTCGGCAGTACAATTGTCCTGGAGAGCAACGGCSizeHit CountTotal NormTotal
No Reads
droAna3
CAAGAAGACTTTCATGTCCTT--TCCCACGCGAAAGGATGTGATTGAAAAGGGTAAGTAC-ATATG---GAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATTTATTATGACTACTGAGTGCTGA-TTTTGTTTATAAGCCAGTCGGATGTTTATTTATTTTTCAATTTGTCACTTGAGGA------GAGAATTCGATTCATGTTATTGTTTTCATATATCGAGCAACGTAGGCGGTAAAGATTTTGTTTATTTTGATTCACTGCACCTTACTTGAAATTATCCATT------------------------------------------------------------------------------------------------------------TATATTGCACTGCAATT-------------------------------------TACTTTTTTTCATATGAGGGTTATATTTTAAACAAGAATATTTAATTTTTTCCCAGATATATGAGACATTTAAGAACCCTTTATGCAAATCACTTACGT----T---CCTTTTTTTTCTAGCACACAAATATGGTCTTTCCGGAAGTACGATTGTCCTGGAGAGCAATGGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTCTTTCCGGAAGTAC......................2011.001000001
..............................CGAAAGGATGTGATTGAAAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droBip1
CAAGAAGACATTCATGTCCTT--TCCTACGCGAAAGGATGTGGTTGAAAAGGGTAAGTCA-ATATC---AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATTAATTCTTATTTATCAGTGTTGAATTTTCATTAAAAACTAGTTGGATGATTATTTATTTTTCGATTCGTCACTTGAGACAATACCTAGAATACTATTATTGTTATTAATTTCAAATTTCGAGCAACGTAGGCGCC-ATGCTTTTGTTTATTTTGATTCAGTGCACTTCCTCTGAAATCGTCTATG------------------------------------------------------------------------------------------------------------TTTATTGCACTGTAATT-------------------------------AAAGTTTACT-----------------------------------------------------------------------------TTAT----ATATTTATTTTCCTT---TTTATAAATTTTAGCTCACAAATATGGGCTAGCTGGAAGTACGATTGTCCTAGAAAGCAATGGCSizeHit CountTotal NormTotal
No Reads
dp5
TAAGTAAT-------------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCTTAA-----------------------------ATTTATATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-ATTAATTAAATA------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGT-----------GCATTTATTAGCCCACAAGTATGGCCTAGCCGGCAACACCATTGTCCTGGAGAGCAATGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCCTGGAGAGCAATGGC2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCATTGTCCTGGAGAGCAAT...2211.0010010000000
droPer2
TAAGTAAT-------------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCTTAA-----------------------------ATTTATATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-ATTAATTAAATA------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGT-----------GCATTTATTAGCCCACAAGTATGGCCTAGCCGGCAACACCATTGTCCTGGAGAGCAATGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATT--------------------TAT---------------------TGAGGGTAGCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---TAG-------T-TTTTTC-----------------------------TTTTCTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT---TCAATAATGTATAGCACACAAATATGGCCTAACTGGTAACAACATTGTCCTGGAGAGCAATGGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATTGTCCTGGAGAGC......1911.00110000
droVir3
ATT--------------------GGCTATGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------A---TTAAACAA---TT-------TTTAAATTAATT-----------------------------TAAATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTA------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTC---TC-ATGCCTTTTAGCACATAAATATGGCTTGGCTGGCAGTACCATAGTGCTGGAGAGCAATGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAGTGCTGGAGAGCA.....1911.001000000000100000000000000000000000000000000000000000000000000000
droMoj3
TGAATCGTTACTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------TATTTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATTAT------TTTTGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTTCATAGCACACAAATACGGCTTGGCTGGAAGTACCATAGTACTGGAAAGCAATGGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CAAAAAGACATTCATGTCCTT--GCCCAGCAGAAAGGATGTTATAGAAAAAGGTATGTGT----GCTACG-------CTGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCCTCAAATTCATTTTTCGGG--GAAATGCTGTACGAACTT-A-----------AAAATTT-G---A-----------------------------------------------------------------------------------------CTT------------------------------------------------------------------------------------ATTTTTTTAAATATATAT-AGTTTTTCAAGCTCAAAA-ATTTGA-----------G-TT--TTTTAAATAT--ACATTTATTTCAATAT------------TTATATATACATATTTATTAGATACCTGGAAAACATTGCA---TTCATTAAATTTGTAAAGTATTT-A----------------------------------------TT----------------------------------------------------------TGAAATTGTTTTTATTAAAATCAAAAT---------------------------------------------------------------GTTTGCATATCCCAGCGCAAACTGTATTCTCATATTCCCAAA-ATCAACTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTATTT-----T-----CATCATCTTAGCACACAAATACGGCTTGTTGGGCAGCACCATTGTGCTCGAGAGCAATGGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:25 AM