ID:

dsi_11592

 Coordinate:

3l:7731167-7731316 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.3 -44.7 -44.7

Flybase annnotation

five_prime_UTR [3l_7731354_7731855_-]; CDS [3l_7731317_7731353_-]; exon [3l_7731317_7731855_-]; intron [3l_7727229_7731316_-]

No Repeatable elements found

mature
  1. 2l:7697733-7697748 +
  2. 2r:3981271-3981286 -
  3. 2r:17151750-17151765 -
  4. dsi_11592  3l:7731175-7731190 -
  5. 3r:3954344-3954359 -
  6. 3r:15077696-15077711 +
  7. x:4727342-4727357 +
  8. x:6424441-6424456 +
star

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGCAGAAGATCCATGGAAATGGAGACCATTGAAGAGCAATCGAAGTGCGGTGAGTACCGAAAGAGGGCGGCGGAGGCTGCCGCGGGGCGTGGCAGCTCCAAATGGCCAGGGAATTTTTCATTTTTCAATGTCGCCCAAGAAGAAAAAAAATACAAACACAGAAGTATCGGTCCAAAGGGGGCGGGGCGGGGTAAAACCACATTCGGGGCCAAAAGATCCTCATAAAAAATGTCGCTGCCAGCAAATGCA
**************************************************.((((....((((((((.((..((((.((((((((...))))))))))))...)).))......))))))....))))((.((((((.............((((..........))))((.(((....))).)))))))).)).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
....................TGGAGACCATTGAAGAGCAATCGAAG............................................................................................................................................................................................................ 26 0 1 15.00 15 14 1 0 0 0 0 0 0 0 0
....................TGGAGACCATTGAAGAGCAATCGAAGT........................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................TGGAGACCATTGAAGAGCAAGCGAAG............................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................GAAATGGAGACCATTGAAGA...................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................TGGAGACCATTGAAGAGCAATCGAA............................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................CGCGGGGTGTGGCAGC......................................................................................................................................................... 16 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....AGAAGATCCATGGAAATGGAG................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................CGCGGGGTGTAGCAGCTC....................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................TTTTGATTCTTCAATGTCGGCC................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..................................................GTGAGTAGCGAAAGACGG...................................................................................................................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...............GGGAATGGACCCCATTGAAGA...................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0
..................................................GTGAGTAGCGAAAGACG....................................................................................................................................................................................... 17 2 8 0.25 2 0 0 2 0 0 0 0 0 0 0
.................................................................................CGCGGGGTGTAGCAGC......................................................................................................................................................... 16 2 20 0.25 5 0 0 0 5 0 0 0 0 0 0
..................................................CTGAGTACCGAAAGA......................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0
.......................................................TAACGAAAGAGGGCG.................................................................................................................................................................................... 15 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................GAGGGGGCGGGGCGGGGT......................................................... 18 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TCCGGGGCCAAAAGA................................. 15 1 18 0.17 3 0 0 0 0 2 0 0 0 1 0
....................................................GAGTAACGAAAGAGG....................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................AGGGGGCGGGGCGGGG.......................................................... 16 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0
...............................................................GAGGGCGGCGCAAGCT........................................................................................................................................................................... 16 2 20 0.10 2 0 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................AGGGGGCGGGGCGGG........................................................... 15 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0
..................................................................GGCGGCGGACGCTCCCG....................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................GGGGGGGGGGAAAACCAC................................................. 18 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GACGTCTTCTAGGTACCTTTACCTCTGGTAACTTCTCGTTAGCTTCACGCCACTCATGGCTTTCTCCCGCCGCCTCCGACGGCGCCCCGCACCGTCGAGGTTTACCGGTCCCTTAAAAAGTAAAAAGTTACAGCGGGTTCTTCTTTTTTTTATGTTTGTGTCTTCATAGCCAGGTTTCCCCCGCCCCGCCCCATTTTGGTGTAAGCCCCGGTTTTCTAGGAGTATTTTTTACAGCGACGGTCGTTTACGT
**************************************************.((((....((((((((.((..((((.((((((((...))))))))))))...)).))......))))))....))))((.((((((.............((((..........))))((.(((....))).)))))))).)).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
................................................................................................................................................TTTTTTTATTTAGGTGTCTTCA.................................................................................... 22 3 18 5.11 92 54 38 0 0 0
...............................................................................................................................................TTTTTTTTATTTAGGTGTCTTCA.................................................................................... 23 3 6 3.67 22 9 13 0 0 0
................................CTCTCGTCAGCTTCACGC........................................................................................................................................................................................................ 18 2 6 0.33 2 0 0 2 0 0
...........................................................................................................................................................ATGTGTCTTCATACCC............................................................................... 16 2 20 0.15 3 0 0 0 3 0
.............................................................................GGCGGCGCCCCCCACCG............................................................................................................................................................ 17 2 20 0.05 1 0 0 0 1 0
...........................................................................................CCGTCGAGGTATCCCG............................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1

Generated: 04/24/2015 at 10:31 AM