ID:

dsi_11590

 Coordinate:

2r:19006278-19006489 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.2 0.5 0.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAAACAACAAGGATATCCGTGAAATCGCCGGGAAAAATATATATCACGAAGTAATATTTTTATTTTTGCACAAATATTTGCAATTGCATACAAACTTCAACGCGTTTTGCAACAATAAACAAGCTGAAATCAAATTGGAGAAACCAACAACTGTAGCAACAATCAAAAAAGTTTACGTGAAAATCGAGCGTGCGTTCGTTGCCGCTTAATAAAAATGTGTACAAAATTCCAAAAGTGCAAATATATTTAAATTACCCCGCAGTGCTCAACGTTCAAAGTTAACAAACAAAAACAAGTCACATAATTGAAAAT
*******************************************************************************************************************************************.................................................**************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...........................................................................................................................................GAAACCAACAACTGTAGCAAC........................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................GAGAAACCAACAACTGTAGCAAC........................................................................................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AAAGTTTACGTGAAAATCGAG............................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...ACAACAAGGATATCCGTG................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................................................................AACGCGTTTTGCAACAATAAACAAGCTG.......................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................AAATTGGAGAAACCAACAACTGTAGCAAC........................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................CAACAACTGTAGCAACAATC.................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................TGCAATTGCATACAAACTTCAACGCG................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.........AGGATATCCGTGAAATCGCC........................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........GATATCCGTGAAATCGCCGG......................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................TGTAGCAACAATCAAAAAAGTTTACG....................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................AAACCAACAACTGTAGCAAC........................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCTTAATAAAAATGTGTA........................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................GCTCAACGTTCAAAGTTAACAAAC......................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................AACAAACAAAAACAAGTCACATA......... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................GTACCAACAATCAAAAAAGT............................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................GAAACCAACAACTGTAGC........................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................GAGAAACCAACAACTGTAGCAACA....................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................GAGAAACCAACAACTGTAGCAGC........................................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................CTGTAGCAACCATCAA.................................................................................................................................................. 16 1 3 0.33 1 0 0 0 0 0 0 0 1 0
.................CGTGAAATCCCCGGG........................................................................................................................................................................................................................................................................................ 15 1 6 0.33 2 0 0 0 0 0 0 1 0 1
.....................................................................................CTATACAAACTTCAACGCGT............................................................................................................................................................................................................... 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTGTAGCACCAATCAA.................................................................................................................................................. 16 1 4 0.25 1 0 0 0 0 0 0 1 0 0
...................TGAAATCGCCGTGAA...................................................................................................................................................................................................................................................................................... 15 1 13 0.15 2 0 0 0 0 0 0 2 0 0
...............................................................................................................................................................................................................AATAAAACTGTGTACAAGACT.................................................................................... 21 3 9 0.11 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................CTGTAGGAACAATCA................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................CTGTAGGAACCATCAAA................................................................................................................................................. 17 2 11 0.09 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................ACTACTGTAGCAACA....................................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 0 0 0 1 0
................ACGTGAAATCCCCGGG........................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................................................................CGTTCAAAGTTAAAA............................ 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................CTGTAGCCACCATCAAA................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................TGAAAATCGAGCGGG........................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................AAGCCGAGCGTGCGTT.................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TTTTGTTGTTCCTATAGGCACTTTAGCGGCCCTTTTTATATATAGTGCTTCATTATAAAAATAAAAACGTGTTTATAAACGTTAACGTATGTTTGAAGTTGCGCAAAACGTTGTTATTTGTTCGACTTTAGTTTAACCTCTTTGGTTGTTGACATCGTTGTTAGTTTTTTCAAATGCACTTTTAGCTCGCACGCAAGCAACGGCGAATTATTTTTACACATGTTTTAAGGTTTTCACGTTTATATAAATTTAATGGGGCGTCACGAGTTGCAAGTTTCAATTGTTTGTTTTTGTTCAGTGTATTAACTTTTA
****************************************************************************************************************************.................................................******************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
...................................................................................................................................................................................................................................................................................TTCAATTGTTTGTTTTTGTTC................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTACATATGTTTTAAGGTTTTCACGT......................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................TTAGCGGCCCTTTGTAT................................................................................................................................................................................................................................................................................. 17 1 2 0.50 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATGTCTTAAGGTTTGCAC........................................................................... 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0
................................................TACATTATAAAAATAAAAACAT.................................................................................................................................................................................................................................................. 22 2 6 0.17 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................................................ATTGTTTGTTTTTGT.................. 15 0 9 0.11 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................TTCACGTTTATATAAGTTT............................................................. 19 1 10 0.10 1 0 0 1 0 0 0 0 0 0
.........................................................................................................AAACCTTGTTATTTGT............................................................................................................................................................................................... 16 1 13 0.08 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................CCGAAATCGTTGTTAGTTTT................................................................................................................................................ 20 3 17 0.06 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................ACTTTTGGCTCTCACGC...................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CCACGCAAGCAACGGCT........................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................ACACGTTTTAAGGTTT............................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................................AATTTTATGGGGCATC.................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:19006228-19006539 - dsi_11590 AAA-ACAACAA-----GGATATCCGTGAAATCGCCGGGAAAAATATATATCACGAAGTAATATTTTTATTTTTGC----------------------------------------ACAAAT-----------------ATT-----------TG--CAATTGCATACAAACTTCAA-----CGCGTTTTGC-----AA-CAAT----------------AAACAAGCTGAAA----TCAAATTGGA--------------------------------------------GAAAC-CAAC--------------AACTGTAGCAAC---A-ATCAAA--AAAGTTTACG------------------------------------------------TGAAAATCGAG--CGTGCGTTCG---------TTGCCGCTTAAT------------------------AAAAAT-GTGTACA---------AAATTCCAAAAGTGCAAATAT--ATTTAAATT-----------ACC-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAACA-AAAA-----CAAGTCACA---TA------------------------------ATTGAAAAT
droSec2 scaffold_9:1778659-1778970 - AAA-ACAACAA-----GGATATCCGTGAAATCGCCGGGAAAAATATATATCACGAAGTAATATTTTTATTTTTGC----------------------------------------ACATAT-----------------ATT-----------TG--CAATTGCATACAAACTTCAA-----CGCGTTTTGC-----AA-CAAT----------------AAACAAACTAAAA----TCAAATTGGA--------------------------------------------GAAAC-CAAC--------------AACTGTAGCAAC---A-ATCAAA--AAAGTTTACG------------------------------------------------TGAAAATCGAG--CGTGCGTTCG---------TTGCCGCTTAAT------------------------AAAAAT-GTGTACA---------AAATTCCAAAAGTGCAAATAT--ATTTAAATT-----------ACC-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAACA-AAAA-----CAAGTCACA---TA------------------------------ATTGAAAAT
dm3 chr2R:18480129-18480422 - AAA-ACAACAA-----GGATATCCGTGAAATCGCCGGGAAAAAAATATATCACGAAGTAATATTTTTATTTTTGC----------------------------------------ACAAAA-----------------ATT-----------TA--CCACTGCATACAAACTACAA-----CGCGTTTTGC-----AA-CAAT----------------AAACAAGCTAAAA----TCAAATTGGA--------------------------------------------GAAAC-CAAC--------------AACTGTAGCAAC---A-ATCAAA--AAAGTTTACG------------------------------------------------TGAAATTCGAG--CGT----------------------------------------------------AAAAAT-GTGTACA---------AAATTCCAAAAGTGCAAATAT--ATTTAAATT-----------ACC-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAACAGAAAA-----CAAGTCACA---TA------------------------------ATTGCAAAT
droEre2 scaffold_4845:7474482-7474783 + AAA-ACAAGTA-----GGATATCCGTGAAATCGCCGGGAAAA----ATATCACGAAGTAATATTTTTATTTTTGC----------------------------------------ATAAAA-----------------AT------------TA--CAACGGTATACAAATTACAT-----TGCGTTTTGC---------AAT----------------AAACAAGCAGAAA----TCAAATTGGA--------------------------------------------GAAAC-CAGC--------------AACTGTAGCAAC---A-ATCAAA--AAAGTTTACG------------------------------------------------TGCAAATCGAG--CGTGCGTTAG---------TTGCCGCTA-AT------------------------AAAAAT-GTGTACA---------AAATTCCGAAAGTGCAAATAT--ATTTAAATC-----------ACT-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAACA--AAA-----CAAGTCACA---TA------------------------------ATTGCAAAT
droYak3 2R:15944223-15944520 - AAA-ACAACAA-----GGATATCCGTGAAATCGCCGGGAAAA----CTAGCACGAAGTAATCTTTTTATTTTTGC----------------------------------------ACAAAA-----------------AT-------------------------------TACAA-----CGCGTTTTGCAAA------AAA----------------A-AAA---AGAAA-----CAAATTAAA--------------------------------------------GAGACGCAAC--------------AACTGTAGCAAC---A-ATCAAACCAAAGTGTA-------------------------------------------CATA-CGTGCAAATCCAG--CGTGCGTTCG---------TTGCCGCTTTATAAA------------------TACGAGTAT-GTGTAGA---------AAATTCGAAAAGTGCAAATAT--ATTTAAATC-----------ACT-------------AC-G-------------------------CGAGTGCTCAACGTTCAC-AGTTAACAAACA--AAA-----CAAGTCACA---TA------------------------------ATTGCAAAT
droEug1 scf7180000409672:6405404-6405717 - AAA-ACAACAAA----GGATATCCGTGAAATCGCCGGGAAAA----ATATAACGAAAATATATTTTGATTCTTGA----------------------------------------ACAAAA-----------------ACA-----------AA--AAACGGTATA-AA-ACTTAA-----CGCGTTTCACAAGACAA-CAAT----------------AAAAAAGCTGAAACGTATAAAAAGCGA--------------------------------------------ATAAC-CAAC--------------AACTGCAGCAAC---A-ATCAA----AAGTTTATA------------------------------------------------CGAAAAGCGTGTTTGTGCGTTCG---------TTGCCGCTTGAT------------------------AAAAAT-GTGTACA---------AAATTCCAAAAGTGCAAATTT--ATTTAAATC-----------ACT-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAACA---AA-----CAAATCAAA---TA------------------------------GGAGAAAAT
droBia1 scf7180000302143:2187611-2187898 + AAA-ACAACAA-----GGGTATCCGCAGAATCGCCGGGAAA-----ATACCACGAA-TGATATTTTGATT-TTGT----------------------------------------ACAAAA-----------------TAA-----------AA--GAGCGGCGTA-AA-ATTTAT-----TGCTTTCCACCAGACAG-CAGT----------------AAGCAAGTCAA--------------------------------------------------------------AGC-CAAC--------------AACTGTAGCAAC---A-ATCAA----AAGTTTATG------------------------------------------------CGA-AAGCGTG--CGTGCGTTCG---------TTGCCGCCCAAT------------------------GGAAAT-GTGTACA---------AAATTCCAAAAGTGCAAAT-T--ATTTAAATA-----------ACT-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAA-CA--AAT-----CAAACCGAG---AA------------------------------AACAAAACC
droTak1 scf7180000415739:373124-373425 - AAA-ACAACAA-----GGATATCCGCAAAATCGCCGGGAATA-CAAATATAGCGAAGCGATATTTTAATTTTTGC----------------------------------------AAAAAA-----------------AAA----------TCGCAGAACGG-------------------TGTGTTTCACAAGACAA-CAAT----------------AAACAAGCTGAAA----TAAAATACGA--------------------------------------------ATAAG-CAAC--------------AGCAGTAGCAAC---A-ATCAA----AAGTTTATA------------------------------------------------CGAGAAGCGTG--CGTGCGTTCG---------TTGCCGCTTAAT------------------------AAAAAT-GTGTACA---------AAATTCCAAAAGTGCAAATTT--ATTTAAATA-----------ACT-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAATA--AAA-----TAAAATACA---AA------------------------------ACTGAAAGA
droEle1 scf7180000491022:57765-58030 - AAAAACCACAAT----ATATATCCGTAAAGTCGCCGGGAAA-----ATATCACGAA-TGATATTTTGATTCTTGA----------------------------------------GAAAA---------------------------------A--CAACGGTATA-AA-ATTAAA-----TGCGTTTCACAAGACAG-CAAT----------------AAACAAACTAAAA----TAACTTAGGA--------------------------------------------ATAAC-CAAC--------------AACTGTAGCAAC---A-ATCAA----AAGTTATTA------------------------------------------------CGAAAAGAGTG--CGTGCGTTTG---------TTGCCGCTTAAC------------------------AAAAAT-GTGTACA---------AAATTTCAAAAGTGAAA------------------------------------------------------------------------------------------------CAAACA--AATCAAACCAAATAAAA---TA------------------------------AAGTAGAAT
droRho1 scf7180000780232:11143-11454 - AAG-ACAACAAT----ATATATCCGTAAAATCGCCGGGAAAA----ATATCACGAAATGATATTTTGATTATTGA-GACG------------------------------------AAAA---------------------------------A--AAACGGTATA-AA-ATTAAA-----TGCGTTTCACAAGACAA-CAAT----------------AAACAAGCAGAAA----CCAAATAGGA--------------------------------------------ATAAC-CAAC--------------AATTGTAGCAAC---A-ATCAA----AAGTTTATA------------------------------------------------CGAAAAGCGTG--CATGCGTTCG---------TTGCCGCTTATA------------------------AAAAAT-GTGTACA---------AAATTCCAAAAGTGCAAATTT--ATTTAAATC-----------ACT-------------CCCG-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAACC--AATGAAA-TAAACGAAA---TA------------------------------ACATAGAAT
droFic1 scf7180000454066:2420539-2420828 - ACA-ACAACAA-----GGATATCCGTAAAATCGCCGGGAAAAA---ATATCACGAAACGATATTTTGAGTCTTAAAAACGA----------------------------------AAACA---------------------------------T--AAACGGAATT-AA-ATTGAA-----TGTGTTTCACGAGACAA-CAAT----------------AAAGTAGAAGAAA----TAAAA--------------------------------------------------AAAC-CAAC--C-----------TACTGAAGCAAC---A-ATCAA----AAGTTTATA-------------------------------------------------------CGTG--CGTGCGTTCG---------TTGCCGCTAAAT------------------------AAAAAT-GTGTACA---------AAATTTCAAAAGTGCAAATTT--ATTTAAATT-----------ACT-------------TC-G-------------------------T-AGTGCTCAACGTTCAAAAGTTAACAAATA--A---------AGTTAAA---T-----------------------------------AAAAC
droKik1 scf7180000302476:1543881-1544402 + AAA-ACCAGCA-----GAATATCCGTTAAATCGCCGGGAAAA----ATATCGCGGAATGATATTTTGAATCTAGT-TACGAAAAGTTATAAACGGCACTTTTGATATATTTTTGAACGGACGGCAGTGGAATTCAATTGGCTGCCTTAGCT-TC--C-----AAAA-AT-ACTCGG-----TGCGTTTCACAAATCAACCAATATATATACATAAATATATACCTGCTGA------GCATATTGAAGCAGGCAGACAACATAACAGCAAAAATCAAAAATAAAGGCAAAAGAAAT-CAACAAATATATACATATAACTGTAGCAACAACA-ATCAA----AAGTTAATA---CGAAAGACCGG--AGAAGTAAA--CAA-CAAGAGC--G-------TAAAAAGCGTGCTTTTGCGTTCG---------TTGCCGCGTTAAAATTATAACAACAAAAAAAAATAAAGAAAT-GTGTACG---------AAATTCCAAAAGTGCAAATTT--ATTTAAATC-----------ACT-------------CT-G---------CTGCAGTGCC------C-AGTGCTCAACGTTCAA-AGTTAACAA-CA-GACG-----GAAAGCTACG--CCGGCGGAGAA---------------------GTTGGCTAA
droAna3 scaffold_13266:7278661-7278870 + CAA-AAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------A----TAAAA--------------------------------------------T--------A-AAACAATTAAA-----------TAAGCAA-AACA-ATCAA----AAATTAATAATTTGAA---ACAG--AAACCAAAG--TCA-G---------AAAACGGCAAAAAACGTG--CGTG-----T---------TTGCCGCTAAAT------------------------GAAAAGTGTTTTTA-AC----AAAAATTACAAAAGTGCAAATTTTATTATAAATC-----------GGC-------------AC-T-------------------------C-GGTGCTCGACGTTCAA-AGTTAACAA-CA-AAAA-----AAAG-------------------------------------------GAGAGG
droBip1 scf7180000396384:94238-94587 + AAA-GCCACAAAGTGTGGATATTCGTGGAATATCAAG-AGGA---------------ATATATTTTT---C--GT----------------------------------------------GACTGTG----------------------------AAACTTTATA--ATCCCCAACCTAGTG-GTCTAAC--------CAAT----------------AAACAA--AGAAA----TAAAA--------------------------------------------C--------A-AAACAATTAAA-----------TAAGCAA-AACA-ATCAA----AA-TTAATT---CGAA----------AACCAAAA--TCAACAAGAAATTATAAA-AGCAGAAAACGTG--CGTGCTTTCGTTTGTTCGCTTGCCGCTAAAT------------------------G-AAAT-GTGTTGGAAC----AAAAATAACAAAAGTGCAAATTTTTATATAAATC-----------GGC-------------AC-T-------------------------C-GGTGCTCAACGTTCAA-AGTTAACAAATA--TAG-----TAGGAGA-------------GGAGTCGGCTAAAGCCCCCCCCAGACTGGAACT
dp5 3:7087934-7088114 - GCA-GCAAAGA-----GC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA-AGTGAAACTTGTG--CGTGCGTTT----------CAGCCGCTA-----------------------------AAAT-GTGAACA---------AAATACC---AGTGCGAAATT--GTTCAAAATTTAACAGAATAACA-------------CCCGTACAAAGGGAACGAATCCCCAGATA----TTCCGGGCATTGAA-ACTGAACCAAAT--ACC-----CAAGTCTAATTGGA------------------------------TTTGATACG
droPer2 scaffold_2:7287470-7287644 - GCA-GCAAAGA-----GC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA-AGTGAAACTTGTG--CGTGCGTTT----------CAGCCGCTA-----------------------------AAAT-GTGAACA---------AAATACC---AGTGCGAAATT--GTTAAAAATTTAACAGAATAACA-------------CCCGTACAAAGGGAACGAATCCCCAGATA----TTCCGGGCACTGAA-ACTGAACCAAAT--ACC-----CAAGTC------TA------------------------------ATTGGATTT
droWil2 scf2_1100000004558:359840-360067 - TTT-ACAATAA-----AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CAAG----------------AA--AACTCAA--------------------------------------------------------------AAA-CAAC--------------GTT--GAGGAA-AACAAATCGA----AATTTTATT---TAAA----CAAATAAATCGAAGAACC--------------------------AGTA--GGCGGTGGCG---------GCGCCACAAACT-----------------------AAAAAAT-GTATACA-ACATAAAAGAATACCAAAAGTGCGAAATT--ATTTAAATC-----------ACCAACAAAAACTTGGCC-G-------------------------C-GACTTTTGGCAATTCG-AATTCACAAA-----AT-----TAAATC--A---AA------------------------------ATCAAAAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAA-ACAACAA-----GGATATCCGTGAAATCGCCGGGAAAAATATATATCACGAAGTAATATTTTTATTTTTGC----------------------------------------ACAAAT-----------------ATT-----------TG--CAATTGCATACAAACTTCAA-----CGCGTTTTGC-----AA-CAAT----------------AAACAAGCTGAAA----TCAAATTGGA--------------------------------------------GAAAC-CAAC--------------AACTGTAGCAAC---A-ATCAAA--AAAGTTTACG------------------------------------------------TGAAAATCGAG--CGTGCGTTCG---------TTGCCGCTTAAT------------------------AAAAAT-GTGTACA---------AAATTCCAAAAGTGCAAATAT--ATTTAAATT-----------ACC-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAACA-AAAA-----CAAGTCACA---TA------------------------------ATTGAAAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................GAAAC-CAAC--------------AACTGTAGCAAC---.....................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
....................................................................................................................................................................................................................................................GA--------------------------------------------GAAAC-CAAC--------------AACTGTAGCAAC---.....................................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
...................................................................................................................................................................................................................................................................................................................................................AAAGTTTACG------------------------------------------------TGAAAATCGAG--....................................................................................................................................................................................................................................................................2111.00100010000000000000
....ACAACAA-----GGATATCCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
..............................................................................................................................................................................AA-----CGCGTTTTGC-----AA-CAAT----------------AAACAAGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
..............................................................................................................................................................................................................................................AAATTGGA--------------------------------------------GAAAC-CAAC--------------AACTGTAGCAAC---.....................................................................................................................................................................................................................................................................................................................................................2911.00100100000000000000
........................................................................................................................................................................................................................................................................................................CAAC--------------AACTGTAGCAAC---A-ATC................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
........................................................................................................................................................TG--CAATTGCATACAAACTTCAA-----CGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000100000
..........A-----GGATATCCGTGAAATCGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.................GATATCCGTGAAATCGCCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................TGTAGCAAC---A-ATCAAA--AAAGTTTACG------------------------------------------------.................................................................................................................................................................................................................................................................................2611.00100000000000010000
...................................................................................................................................................................................................................................................................................................AAAC-CAAC--------------AACTGTAGCAAC---.....................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAAT------------------------AAAAAT-GTGTA.................................................................................................................................................................................................1811.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACGTTCAA-AGTTAACAAAC................................................................2411.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAACA-AAAA-----CAAGTCACA---TA------------------------------.........2311.00100010000000000000
..................................................................................................................................................................................................................................................................................................GAAAC-CAAC--------------AACTGTAGC...........................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
....................................................................................................................................................................................................................................................GA--------------------------------------------GAAAC-CAAC--------------AACTGTAGCAAC---A-...................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
droSec2
AAA-ACAACAA-----GGATATCCGTGAAATCGCCGGGAAAAATATATATCACGAAGTAATATTTTTATTTTTGC----------------------------------------ACATAT-----------------ATT-----------TG--CAATTGCATACAAACTTCAA-----CGCGTTTTGC-----AA-CAAT----------------AAACAAACTAAAA----TCAAATTGGA--------------------------------------------GAAAC-CAAC--------------AACTGTAGCAAC---A-ATCAAA--AAAGTTTACG------------------------------------------------TGAAAATCGAG--CGTGCGTTCG---------TTGCCGCTTAAT------------------------AAAAAT-GTGTACA---------AAATTCCAAAAGTGCAAATAT--ATTTAAATT-----------ACC-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAACA-AAAA-----CAAGTCACA---TA------------------------------ATTGAAAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................TGGA--------------------------------------------GAAAC-CAAC--------------AACTGTAGC...........................................................................................................................................................................................................................................................................................................................................................2211.0010100
..........................................................................................................................................................................................................................................................................................................................................................ACG------------------------------------------------TGAAAATCGAG--CGTGCGT.............................................................................................................................................................................................................................................................2111.0011000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATT-----------ACC-------------CC-G-------------------------C-AGTGCTCAAC..................................................................................2211.0010010
..A-ACAACAA-----GGATATCCGTGAAATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
..........A-----GGATATCCGTGAAATCGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------ACC-------------CC-G-------------------------C-AGTGCTCAACGTTC..............................................................................2211.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................GAAAATCGAG--CGTGCGTTCG---------TTGCCG...........................................................................................................................................................................................................................................2611.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------AAATTCCAAAAGTGCAA.....................................................................................................................................................................1911.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAAA-----CAAGTCACA---TA------------------------------ATTGA....2111.0010010
.................GATATCCGTGAAATCGCCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
AAA-ACAACAA-----GGATATCCGTGAAATCGCCGGGAAAAAAATATATCACGAAGTAATATTTTTATTTTTGC----------------------------------------ACAAAA-----------------ATT-----------TA--CCACTGCATACAAACTACAA-----CGCGTTTTGC-----AA-CAAT----------------AAACAAGCTAAAA----TCAAATTGGA--------------------------------------------GAAAC-CAAC--------------AACTGTAGCAAC---A-ATCAAA--AAAGTTTACG------------------------------------------------TGAAATTCGAG--CGT----------------------------------------------------AAAAAT-GTGTACA---------AAATTCCAAAAGTGCAAATAT--ATTTAAATT-----------ACC-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAACAGAAAA-----CAAGTCACA---TA------------------------------ATTGCAAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....ACAACAA-----GGATATCCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000100000000000000100000000000100001002000000000000000000000000000000000000000000
.......................................................................................................................................................................AAACTACAA-----CGCGTTTTGC-----AA-CAAT----------------AAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGATATCCGTGAAATCGCCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004
.............................ATCGCCGGGAAAAAAATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGAG--CGT----------------------------------------------------AAAAAT-GTGTAC................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GTGAAATCGCCGGGAAAAAAATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT-----------ACC-------------CC-G-------------------------C-AGTGCTC.....................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..A-ACAACAA-----GGATATCCGTGAAATCGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..A-ACAACAA-----GGATATCCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.AA-ACAACAA-----GGATATCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCAA-AGTTAACAAACA...............................................................1921.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AA-ACAACAA-----GGATATCCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................ACAA-----CGCGTTTTGC-----AA-CAAT----------------AAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAA-----CAAGTCACA---TA------------------------------ATTGCAAA.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................TT-----------TA--CCACTGCATACAAACTACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAAATCGCCGGGAAAAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................ACTGCATACAAACTACAA-----CGCGTTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................................ATATCACGAAGTAATATTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ATT-----------TA--CCACTGCATACAAACTACAA-----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AA-----GGATATCCGTGAAATCGCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................................GTTTTGC-----AA-CAAT----------------AAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..A-ACAACAA-----GGATATCCGTGAAATCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................ACAAACTACAA-----CGCGTTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ATCGCCGGGAAAAAAATATATCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCCGGGAAAAAAATATATCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAA-----GGATATCCGTGAAATCGCATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAAATCGCCGGGAAAAAAATATATCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....CAACAA-----GGATATCCGTGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........A-----GGATATCCGTGAAATCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-GTGTACA---------AAATTCCAAAA...........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAACAGAAAA-----CAAGTC...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ACAACAA-----GGATATCCGTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AA-----GGATATCCGTGAAATCGCCGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAAATCGCCGGGAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGATATCCGTGAAATCGCCGGGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...................TATCCGTGAAATCGCCGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TTGGA--------------------------------------------GAAAC-CAAC--------------AACTGTAGCAA.........................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT-----------ACC-------------CC-G-------------------------C-AGTGCTCA....................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATT-----------ACC-------------CC-G-------------------------C-AGTGCTC.....................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ACAACAA-----GGATATCCGTGAAATCGCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........A-----GGATATCCGTGAAATCGCCGGGAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................GTTTACG------------------------------------------------TGAAATTCGAG--CGT----------------------------------------------------GCG..........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................TGCATACAAACTACAA-----CGCGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................GGA--------------------------------------------GAAAC-CAAC--------------AACTGTAGCAAC---.....................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TA--CCACTGCATACAAACTACAA-----CGCGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................................................................ATACAAACTACAA-----CGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AA-----GGATATCCGTGAAATCGCCGGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACA---------AAATTCCAAAAGTGCAAAT...................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................CTGTAGCAAC---A-ATCAAA--AAAGT......................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
....................................................................................................................................................................................................................................................................................................AAC-CAAC--------------AACTGTAGCAAC---.....................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AAAA-----------------ATT-----------TA--CCACTGCATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TACG------------------------------------------------TGAAATTCGAG--CGT----------------------------------------------------GCG..........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........A-----GGATATCCGTGAAATCGCCGGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CATACAAACTACAA-----CGCGTTTTGC-----AA-C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AA----TCAAATTGGA--------------------------------------------GAAAC-CAAC--------------AACTG...............................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AA-----GGATATCCGTGAAATCGCCGGGATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................ATTGGA--------------------------------------------GAAAC-CAAC--------------AACTGTAGC...........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................ACG------------------------------------------------TGAAATTCGAG--CGT----------------------------------------------------GCG..........................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................CG------------------------------------------------TGAAATTCGAG--CGT----------------------------------------------------GC...........................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droEre2
AAA-ACAAGTA-----GGATATCCGTGAAATCGCCGGGAAAA----ATATCACGAAGTAATATTTTTATTTTTGC----------------------------------------ATAAAA-----------------AT------------TA--CAACGGTATACAAATTACAT-----TGCGTTTTGC---------AAT----------------AAACAAGCAGAAA----TCAAATTGGA--------------------------------------------GAAAC-CAGC--------------AACTGTAGCAAC---A-ATCAAA--AAAGTTTACG------------------------------------------------TGCAAATCGAG--CGTGCGTTAG---------TTGCCGCTA-AT------------------------AAAAAT-GTGTACA---------AAATTCCGAAAGTGCAAATAT--ATTTAAATC-----------ACT-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAACA--AAA-----CAAGTCACA---TA------------------------------ATTGCAAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....ACAAGTA-----GGATATCCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000020
................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGAG--CGTGCGTTAG---------TTGCCGCT.........................................................................................................................................................................................................................................2611.0010000010
.......................................................................TTGC----------------------------------------ATAAAA-----------------AT------------TA--CAACGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTTCAA-AGTTAACAAAC................................................................2111.0010100000
...........................................................................................................................................................................................................................................................................................................................ACTGTAGCAAC---A-ATCAAA--AAAGTT.....................................................................................................................................................................................................................................................................................................................................2411.0010000100
..........A-----GGATATCCGTGAAATCGCCGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...................................................................ATTTTTGC----------------------------------------ATAAAA-----------------AT------------TA--CAACGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
..........A-----GGATATCCGTGAAATCGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000
................................................................................................................................................................................................................................AGCAGAAA----TCAAATTGGA--------------------------------------------G...........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.................................................................................................................................................................................................................................GCAGAAA----TCAAATTGGA--------------------------------------------GAAAC-C.....................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
...................................................................................................................................................................ATACAAATTACAT-----TGCGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACA---------AAATTCCGAAAGTGC.......................................................................................................................................................................2111.0010000010
.........................................................................................................................................................................................................AT----------------AAACAAGCAGAAA----TCAAATTGGA--------------------------------------------G...........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
.........................................A----ATATCACGAAGTAATATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
......................................................................................................................................................................................................................................................................................................................................................GTTTACG------------------------------------------------TGCAAATCGAG--CGTGCGTTA...........................................................................................................................................................................................................................................................2711.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTAG---------TTGCCGCTA-AT------------------------A............................................................................................................................................................................................................2011.0010000010
...................................................................................................................................................................................................................................................................................................................................................AAAGTTTACG------------------------------------------------TGCAAATCGAG--....................................................................................................................................................................................................................................................................2111.0010000100
........................................................................................................................................................................AATTACAT-----TGCGTTTTGC---------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
droYak3
AAA-ACAACAA-----GGATATCCGTGAAATCGCCGGGAAAA----CTAGCACGAAGTAATCTTTTTATTTTTGC----------------------------------------ACAAAA-----------------AT-------------------------------TACAA-----CGCGTTTTGCAAA------AAA----------------A-AAA---AGAAA-----CAAATTAAA--------------------------------------------GAGACGCAAC--------------AACTGTAGCAAC---A-ATCAAACCAAAGTGTA-------------------------------------------CATA-CGTGCAAATCCAG--CGTGCGTTCG---------TTGCCGCTTTATAAA------------------TACGAGTAT-GTGTAGA---------AAATTCGAAAAGTGCAAATAT--ATTTAAATC-----------ACT-------------AC-G-------------------------CGAGTGCTCAACGTTCAC-AGTTAACAAACA--AAA-----CAAGTCACA---TA------------------------------ATTGCAAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....ACAACAA-----GGATATCCGTGAAATCGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00210100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CCAG--CGTGCGTTCG---------TTGCC............................................................................................................................................................................................................................................1911.00100000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-------------AC-G-------------------------CGAGTGCTCAACGTTCAC-A..........................................................................2511.00101000000000
...............................................................................................................................................................................................................................A---AGAAA-----CAAATTAAA--------------------------------------------GAGACGCAAC--------------....................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..................................................................................................................................................................................................................................................................................................GAGACGCAAC--------------AACTGTAGC...........................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..........................GAAATCGCCGGGAAAA----CTAGCACGAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................CATA-CGTGCAAATCCAG--CGTGCGTTCG---------T................................................................................................................................................................................................................................................2811.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................GCAAATCCAG--CGTGCGTTCG---------TTGC.............................................................................................................................................................................................................................................2411.00100000010000
.........AA-----GGATATCCGTGAAATCGCCGGGAAAA----C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-------------AC-G-------------------------CGAGTGCTCAACGTT...............................................................................2011.00100000010000
..............................................................................................................................................................................AA-----CGCGTTTTGCAAA------AAA----------------A-AAA---GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAT-GTGTAGA---------AAATTCGAAAAGTGC.......................................................................................................................................................................2611.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGA---------AAATTCGAAAAGTGC.......................................................................................................................................................................2111.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAT-GTGTAGA---------AAATTCGAAAAGTGCA......................................................................................................................................................................2711.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAT-GTGTAGA---------AAATT.................................................................................................................................................................................1811.00101000000000
.......................CGTGAAATCGCCGGGAAAA----CTAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..........A-----GGATATCCGTGAAATCGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATC-----------ACT-------------AC-G-------------------------CGAGT.........................................................................................1811.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCTCAACGTTCAC-AGTTAACAAAC................................................................2811.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAA------------------TACGAGTAT-GTGT..................................................................................................................................................................................................1911.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGA---------AAATTCGAAAAGTGC.......................................................................................................................................................................2011.00100100000000
...........................................................................................................................................................................................................................................................................................................................ACTGTAGCAAC---A-ATCAAACCA..........................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..................................................................................................................................................................................................................................................................................................GAGACGCAAC--------------AACTGTAGCAAC---A-...................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...................................................................................................................ACAAAA-----------------AT-------------------------------TACAA-----CGCGTTTTGCAAA------AAA----------------A-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000
....................................................................................................................................................................................................................................................AA--------------------------------------------GAGACGCAAC--------------AACTGTAGCAAC---A-AC.................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
......AACAA-----GGATATCCGTGAAATCGCCGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.....................................................................................................................AAAA-----------------AT-------------------------------TACAA-----CGCGTTTTGCAAA------AAA----------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...............................CGCCGGGAAAA----CTAGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
..........................................................................................................................................................................................................................................................................................................AC--------------AACTGTAGCAAC---A-ATCAAACC...........................................................................................................................................................................................................................................................................................................................................2311.00110000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------AC-G-------------------------CGAGTGCTCAACGTTCAC-AGT........................................................................2511.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC-----------ACT-------------AC-G-------------------------CGAGTGCTCAA...................................................................................2011.00100000010000
droEug1
AAA-ACAACAAA----GGATATCCGTGAAATCGCCGGGAAAA----ATATAACGAAAATATATTTTGATTCTTGA----------------------------------------ACAAAA-----------------ACA-----------AA--AAACGGTATA-AA-ACTTAA-----CGCGTTTCACAAGACAA-CAAT----------------AAAAAAGCTGAAACGTATAAAAAGCGA--------------------------------------------ATAAC-CAAC--------------AACTGCAGCAAC---A-ATCAA----AAGTTTATA------------------------------------------------CGAAAAGCGTGTTTGTGCGTTCG---------TTGCCGCTTGAT------------------------AAAAAT-GTGTACA---------AAATTCCAAAAGTGCAAATTT--ATTTAAATC-----------ACT-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAACA---AA-----CAAATCAAA---TA------------------------------GGAGAAAATSizeHit CountTotal NormTotal
No Reads
droBia1
AAA-ACAACAA-----GGGTATCCGCAGAATCGCCGGGAAA-----ATACCACGAA-TGATATTTTGATT-TTGT----------------------------------------ACAAAA-----------------TAA-----------AA--GAGCGGCGTA-AA-ATTTAT-----TGCTTTCCACCAGACAG-CAGT----------------AAGCAAGTCAA--------------------------------------------------------------AGC-CAAC--------------AACTGTAGCAAC---A-ATCAA----AAGTTTATG------------------------------------------------CGA-AAGCGTG--CGTGCGTTCG---------TTGCCGCCCAAT------------------------GGAAAT-GTGTACA---------AAATTCCAAAAGTGCAAAT-T--ATTTAAATA-----------ACT-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAA-CA--AAT-----CAAACCGAG---AA------------------------------AACAAAACCSizeHit CountTotal NormTotal
No Reads
droTak1
AAA-ACAACAA-----GGATATCCGCAAAATCGCCGGGAATA-CAAATATAGCGAAGCGATATTTTAATTTTTGC----------------------------------------AAAAAA-----------------AAA----------TCGCAGAACGG-------------------TGTGTTTCACAAGACAA-CAAT----------------AAACAAGCTGAAA----TAAAATACGA--------------------------------------------ATAAG-CAAC--------------AGCAGTAGCAAC---A-ATCAA----AAGTTTATA------------------------------------------------CGAGAAGCGTG--CGTGCGTTCG---------TTGCCGCTTAAT------------------------AAAAAT-GTGTACA---------AAATTCCAAAAGTGCAAATTT--ATTTAAATA-----------ACT-------------CC-G-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAATA--AAA-----TAAAATACA---AA------------------------------ACTGAAAGASizeHit CountTotal NormTotal
No Reads
droEle1
AAAAACCACAAT----ATATATCCGTAAAGTCGCCGGGAAA-----ATATCACGAA-TGATATTTTGATTCTTGA----------------------------------------GAAAA---------------------------------A--CAACGGTATA-AA-ATTAAA-----TGCGTTTCACAAGACAG-CAAT----------------AAACAAACTAAAA----TAACTTAGGA--------------------------------------------ATAAC-CAAC--------------AACTGTAGCAAC---A-ATCAA----AAGTTATTA------------------------------------------------CGAAAAGAGTG--CGTGCGTTTG---------TTGCCGCTTAAC------------------------AAAAAT-GTGTACA---------AAATTTCAAAAGTGAAA------------------------------------------------------------------------------------------------CAAACA--AATCAAACCAAATAAAA---TA------------------------------AAGTAGAATSizeHit CountTotal NormTotal
No Reads
droRho1
AAG-ACAACAAT----ATATATCCGTAAAATCGCCGGGAAAA----ATATCACGAAATGATATTTTGATTATTGA-GACG------------------------------------AAAA---------------------------------A--AAACGGTATA-AA-ATTAAA-----TGCGTTTCACAAGACAA-CAAT----------------AAACAAGCAGAAA----CCAAATAGGA--------------------------------------------ATAAC-CAAC--------------AATTGTAGCAAC---A-ATCAA----AAGTTTATA------------------------------------------------CGAAAAGCGTG--CATGCGTTCG---------TTGCCGCTTATA------------------------AAAAAT-GTGTACA---------AAATTCCAAAAGTGCAAATTT--ATTTAAATC-----------ACT-------------CCCG-------------------------C-AGTGCTCAACGTTCAA-AGTTAACAAACC--AATGAAA-TAAACGAAA---TA------------------------------ACATAGAATSizeHit CountTotal NormTotal
No Reads
droFic1
ACA-ACAACAA-----GGATATCCGTAAAATCGCCGGGAAAAA---ATATCACGAAACGATATTTTGAGTCTTAAAAACGA----------------------------------AAACA---------------------------------T--AAACGGAATT-AA-ATTGAA-----TGTGTTTCACGAGACAA-CAAT----------------AAAGTAGAAGAAA----TAAAA--------------------------------------------------AAAC-CAAC--C-----------TACTGAAGCAAC---A-ATCAA----AAGTTTATA-------------------------------------------------------CGTG--CGTGCGTTCG---------TTGCCGCTAAAT------------------------AAAAAT-GTGTACA---------AAATTTCAAAAGTGCAAATTT--ATTTAAATT-----------ACT-------------TC-G-------------------------T-AGTGCTCAACGTTCAAAAGTTAACAAATA--A---------AGTTAAA---T-----------------------------------AAAACSizeHit CountTotal NormTotal
No Reads
droKik1
AAA-ACCAGCA-----GAATATCCGTTAAATCGCCGGGAAAA----ATATCGCGGAATGATATTTTGAATCTAGT-TACGAAAAGTTATAAACGGCACTTTTGATATATTTTTGAACGGACGGCAGTGGAATTCAATTGGCTGCCTTAGCT-TC--C-----AAAA-AT-ACTCGG-----TGCGTTTCACAAATCAACCAATATATATACATAAATATATACCTGCTGA------GCATATTGAAGCAGGCAGACAACATAACAGCAAAAATCAAAAATAAAGGCAAAAGAAAT-CAACAAATATATACATATAACTGTAGCAACAACA-ATCAA----AAGTTAATA---CGAAAGACCGG--AGAAGTAAA--CAA-CAAGAGC--G-------TAAAAAGCGTGCTTTTGCGTTCG---------TTGCCGCGTTAAAATTATAACAACAAAAAAAAATAAAGAAAT-GTGTACG---------AAATTCCAAAAGTGCAAATTT--ATTTAAATC-----------ACT-------------CT-G---------CTGCAGTGCC------C-AGTGCTCAACGTTCAA-AGTTAACAA-CA-GACG-----GAAAGCTACG--CCGGCGGAGAA---------------------GTTGGCTAASizeHit CountTotal NormTotal
No Reads
droAna3
CAA-AAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------A----TAAAA--------------------------------------------T--------A-AAACAATTAAA-----------TAAGCAA-AACA-ATCAA----AAATTAATAATTTGAA---ACAG--AAACCAAAG--TCA-G---------AAAACGGCAAAAAACGTG--CGTG-----T---------TTGCCGCTAAAT------------------------GAAAAGTGTTTTTA-AC----AAAAATTACAAAAGTGCAAATTTTATTATAAATC-----------GGC-------------AC-T-------------------------C-GGTGCTCGACGTTCAA-AGTTAACAA-CA-AAAA-----AAAG-------------------------------------------GAGAGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................AACCAAAG--TCA-G---------AAAACGGC................................................................................................................................................................................................................................................................................2013.003030000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATTATAAATC-----------GGC-------------AC-T-------------------------C-GGT.........................................................................................2511.001000010
..............................................................................................................................................................................................................................................................................................................................................................................AACCAAAG--TCA-G---------AAAACGGCA...............................................................................................................................................................................................................................................................................2111.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CGTG-----T---------TTGCCGCTAAAT------------------------GA...........................................................................................................................................................................................................1911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACAAAAGTGCAAATTTT................................................................................................................................................................2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-T-------------------------C-GGTGCTCGACGTTCAA-AGTT.......................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................AATTAATAATTTGAA---ACAG--AAACC............................................................................................................................................................................................................................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------GGC-------------AC-T-------------------------C-GGTGCTCGACGTTCAA-...........................................................................2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTG-----T---------TTGCCGCTAAAT------------------------GA...........................................................................................................................................................................................................1811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTATTATAAATC-----------GGC-------------AC-T-------------------------C-GAC.........................................................................................2611.001010000
droBip1
AAA-GCCACAAAGTGTGGATATTCGTGGAATATCAAG-AGGA---------------ATATATTTTT---C--GT----------------------------------------------GACTGTG----------------------------AAACTTTATA--ATCCCCAACCTAGTG-GTCTAAC--------CAAT----------------AAACAA--AGAAA----TAAAA--------------------------------------------C--------A-AAACAATTAAA-----------TAAGCAA-AACA-ATCAA----AA-TTAATT---CGAA----------AACCAAAA--TCAACAAGAAATTATAAA-AGCAGAAAACGTG--CGTGCTTTCGTTTGTTCGCTTGCCGCTAAAT------------------------G-AAAT-GTGTTGGAAC----AAAAATAACAAAAGTGCAAATTTTTATATAAATC-----------GGC-------------AC-T-------------------------C-GGTGCTCAACGTTCAA-AGTTAACAAATA--TAG-----TAGGAGA-------------GGAGTCGGCTAAAGCCCCCCCCAGACTGGAACTSizeHit CountTotal NormTotal
No Reads
dp5
GCA-GCAAAGA-----GC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA-AGTGAAACTTGTG--CGTGCGTTT----------CAGCCGCTA-----------------------------AAAT-GTGAACA---------AAATACC---AGTGCGAAATT--GTTCAAAATTTAACAGAATAACA-------------CCCGTACAAAGGGAACGAATCCCCAGATA----TTCCGGGCATTGAA-ACTGAACCAAAT--ACC-----CAAGTCTAATTGGA------------------------------TTTGATACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGGAACGAATCCCCAG.................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGCTA-----------------------------AAAT-GTGAAC................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TTCCGGGCATTGAA-ACTGAACCAA.................................................................2511.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------AAAT-GTGAACA---------AAATACC---AGTGCGAA....................................................................................................................................................................2711.0010001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---------AAATACC---AGTGCGA.....................................................................................................................................................................1811.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACTTGTG--CGTGCGT.............................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAATCCCCAGATA----TTCCGGGCATT...............................................................................2711.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACC---AGTGCGAAATT--GTTCAAAATTTAA..................................................................................................................................................2811.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-ACTGAACCAAAT--ACC-----CAA..................................................2111.0010100000000
droPer2
GCA-GCAAAGA-----GC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA-AGTGAAACTTGTG--CGTGCGTTT----------CAGCCGCTA-----------------------------AAAT-GTGAACA---------AAATACC---AGTGCGAAATT--GTTAAAAATTTAACAGAATAACA-------------CCCGTACAAAGGGAACGAATCCCCAGATA----TTCCGGGCACTGAA-ACTGAACCAAAT--ACC-----CAAGTC------TA------------------------------ATTGGATTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAACTTGTG--CGTGC...............................................................................................................................................................................................................................................................1812.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAA-ACTGAACCAAAT--ACC-----CAAGT................................................2612.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAATAACA-------------CCCGTACAAAGG...............................................................................................................2211.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TTCCGGGCACTGAA-ACTGAACC...................................................................2311.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCGAAATT--GTTAAAAATTTAACA................................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTG--CGTGCGTTT----------CAGCCG...........................................................................................................................................................................................................................................1811.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACA---------AAATACC---AGTGCGA.....................................................................................................................................................................1911.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGAA-ACTGAACCAAAT--ACC-----CAAGT................................................2711.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACC---AGTGCGAAATT--GTT............................................................................................................................................................1911.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATA----TTCCGGGCACTGAA-ACTGAACCA..................................................................2711.001100000
droWil2
TTT-ACAATAA-----AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CAAG----------------AA--AACTCAA--------------------------------------------------------------AAA-CAAC--------------GTT--GAGGAA-AACAAATCGA----AATTTTATT---TAAA----CAAATAAATCGAAGAACC--------------------------AGTA--GGCGGTGGCG---------GCGCCACAAACT-----------------------AAAAAAT-GTATACA-ACATAAAAGAATACCAAAAGTGCGAAATT--ATTTAAATC-----------ACCAACAAAAACTTGGCC-G-------------------------C-GACTTTTGGCAATTCG-AATTCACAAA-----AT-----TAAATC--A---AA------------------------------ATCAAAAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................ACC--------------------------AGTA--GGCGGTGGCG---------GCGCCA...........................................................................................................................................................................................................................................2311.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAAAAGTGCGAAATT--A..............................................................................................................................................................2011.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGAATACCAAAAGTGCGAAATT--...............................................................................................................................................................2611.00101000
................................................................................................................................................................................................................................................................................................................................AGGAA-AACAAATCGA----AATTTT....................................................................................................................................................................................................................................................................................................................................2111.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACA-ACATAAAAGAATACCAAAAGT.........................................................................................................................................................................2611.00100100
...................................................................................................................................................................................................................................CAA--------------------------------------------------------------AAA-CAAC--------------GTT--GAGGAA-AACAAATC................................................................................................................................................................................................................................................................................................................................................2711.00100100
...........................................................................................................................................................................................................................AA--AACTCAA--------------------------------------------------------------AAA-CAAC--------------GTT--GA.............................................................................................................................................................................................................................................................................................................................................................2111.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGCC-G-------------------------C-GACTTTTGGCAATTC.............................................................................2611.00110000
....................................................................................................................................................................................................................................................................................................................................................................................AGAACC--------------------------AGTA--GGCGGTGGCG---------GCGCC............................................................................................................................................................................................................................................2511.00100010
..........................................................................................................................................................................................................................................................................................................................................................................AATAAATCGAAGAACC--------------------------AGTA--GGC.................................................................................................................................................................................................................................................................2311.00100100

Generated: 05/19/2015 at 05:36 AM