ID:

dsi_11585

 Coordinate:

2r:13653243-13653392 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.7 -19.4 -19.4 -19.3

Flybase annnotation

CDS [2r_13652947_13653217_-]; five_prime_UTR [2r_13653218_13653242_-]; exon [2r_13652947_13653242_-]; intron [2r_13653243_13655380_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCAAAATGGCGTGAAATGGCTAGCACTGCCAATTATCGAAGTTTTTAACATATGTATATCTATTCTGATAGCCAAGAAAACATAACGGTTACCAACTTTCTATATACGTAGCAATTTATTATTGATGAATAACAAATTATCGATAGTACTTCACCGATAAGATTCTGTTAACACACATTACACATTACATTTCTTTCAGGGAATTGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCAC
**************************************************...............((((.....(((((.........((((.((....(((.(((.((........((((((((((((........))))))))))))......))))))))...)).))))..................)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
....AAATGGCGTGAAATGG...................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 1 0
......................................................................................................................................AAATTATCGATAGTACTTCAC............................................................................................... 21 0 1 1.00 1 0 0 1
.............................................................................................................................................................................................................TGCATTGAGAAAGCGCAGAGATGGCC................... 26 0 1 1.00 1 0 1 0
.......................................................................................................................................................................................................................AAGCGCAGAGATGGCCGAT................ 19 0 1 1.00 1 1 0 0
..............................................................................................................................................................................................................................GAGATGGCCGATGAAGCACAA....... 21 0 1 1.00 1 1 0 0
..................................TATTGAAGTTTTTGACATCTG................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0
............................GCCAATTGTCGAACTTTT............................................................................................................................................................................................................ 18 2 14 0.07 1 0 0 1

Anti-sense strand reads

AAGTTTTACCGCACTTTACCGATCGTGACGGTTAATAGCTTCAAAAATTGTATACATATAGATAAGACTATCGGTTCTTTTGTATTGCCAATGGTTGAAAGATATATGCATCGTTAAATAATAACTACTTATTGTTTAATAGCTATCATGAAGTGGCTATTCTAAGACAATTGTGTGTAATGTGTAATGTAAAGAAAGTCCCTTAACGTAACTCTTTCGCGTCTCTACCGGCTACTTCGTGTTCGTGGTG
**************************************************...............((((.....(((((.........((((.((....(((.(((.((........((((((((((((........))))))))))))......))))))))...)).))))..................)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 GSM343915
embryo
...................................................................................ATTGCCAATGGTTGAAAGATATAT............................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
.......................................................ATATAGATAAGAGCATCGGT............................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0
...............................................................................TTATATTGCCAATGGTT.......................................................................................................................................................... 17 1 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................TAGTCTAAGACAAGTGTGT.......................................................................... 19 2 3 0.33 1 0 0 1 0 0
....................................................................................................................................................................................................................................CGGCTACTGCGTGTGCATGGT. 21 3 5 0.20 1 0 0 1 0 0
..........................................................................................ATAGTTGAAAGATATA................................................................................................................................................ 16 1 13 0.15 2 0 2 0 0 0
..................................................................................................................................................................................................................................ACCGGCTACTGCGTG......... 15 1 7 0.14 1 1 0 0 0 0
..............................................................................................................................................................AGTCTAAGACAAGTGTGT.......................................................................... 18 2 8 0.13 1 0 0 1 0 0
....................................AGCTTCAAATATTGCATGC................................................................................................................................................................................................... 19 3 17 0.12 2 1 0 0 0 1
...................................................................CTATAGGTTCTTTAGTAT..................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 1 0
........................................................................................................................................................................................................................................TACTTCGAGTTCGTGG.. 16 1 12 0.08 1 1 0 0 0 0
....................................AGCTTCAAAATTGGCATAC................................................................................................................................................................................................... 19 3 17 0.06 1 1 0 0 0 0
............................................................................................................................................................ATAGTCTAAGACAAGTGTGT.......................................................................... 20 3 17 0.06 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:13653193-13653442 - dsi_11585 TTCA----------AAATGGCGTGAAATGGCT-AGCA--CTGCC------------------AATTATCGAA---------------------------GTTTTT-AACATATGT----ATATCTATTCTGATAGCCAAGAAAACATAACGGTTACCAACTTTCTATATACG--------------------------------TAGCAATTTATTA-------------------------------TTGATG----------------------------------AA---------------TAACAA-------ATTATCGATAGTACTTCACCGATAA--------------------------------------GATTCTGTTAACACACAT--------------------------------------------------------------------------------------TACACATTACA------------T-T-TCTTTCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCAC
droSec2 scaffold_1:10493152-10493399 - TTCA----------AAATGGCGTGAAATGGCT-AGCA--CTGCC------------------AATTATCGAA---------------------------GTTTTT-AATATATGT----ATATCTATTCTGATAGCCAAGAAAACATAACGGTTACCAACTATTTATATACG--------------------------------CCGCAATTTATTA-------------------------------TTGATG----------------------------------AA---------------TAATAA-------ATTATCGATAGTACTTCACCGATAA--------------------------------------GATTCTGTTAACATACAT--------------------------------------------------------------------------------------TGCTC--TACA------------T-T-TCTCTCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCAC
dm3 chr2R:12982516-12982763 - TTCA----------AAACGGCGTGAAATGGCT-AGCA--CTCTA------------------AATTATTGAA---------------------------GTTTTC-AACATATGT----ATATCTAATCTGATAGCCAAGAAAACATAATGGTTACCAACTTTCCATATACA--------------------------------CCGTAATTTATTA-------------------------------TTGATG----------------------------------AA---------------TATCAA-------ATTATCGATAGTACTTCCCCGATAA--------------------------------------GATTCTGTTAACACACAT--------------------------------------------------------------------------------------TGCTC--TACT------------T-T-TCTATCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCAC
droEre2 scaffold_4845:12859843-12860076 + TTCA----------AAATGGCGTGAAATGGTT-AGCA--TTGCAATT-TGTATTCGACTGCTAA-TATCGGA---------------------------GTTTTC-ATCAAATGTACATATATCTATTATGA-AGCTAAGAAAACGTAATGGTT-CTAACTTTT------------------------------------------------------------------------------------------------------------------------------------------------CAA-------GTTATCAATAGTACTGCTCCGATAA--------------------------------------GATCCTGTTAACACACAT--------------------------------------------------------------------------------------TGCTC--TACA------------T-T-TCTTTCAGGGAAT--TGCATTGAGAAAACGCAGAGATGGCCGATGAAGCACAAGCACCAC
droYak3 2R:18483914-18484174 + TTCG----------AAATGGCTTGAAATGCTT-AACA--TTGCAACT-TCTATTTTACTGCTAA-TATCGGA---------------------------GTTTCC-ATTATATGTACATATATCTATTCTGATAGCCAAGAAAACTTAATGGCT-TTAACTTTT-------G--------------------------------CTGTTATTTATTA-------------------------------ATGAAG----------------------------------AA---------------TACCAA-------GTTATCAATGGTACTTCTCTGATAA--------------------------------------GATCCTGCTAACACACAT--------------------------------------------------------------------------------------TGCTC--TATT------------T-TCCTTTTCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCAC
droEug1 scf7180000409672:2134490-2134552 + AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------T-G-CTTTACAGGGAAT--TGCATTGAGAGAGCGCAGAAATGGCCGATGAAGCACAAGCACCAC
droBia1 scf7180000301754:5232737-5232793 - C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCAC
droTak1 scf7180000415345:11128-11416 - TTCG----------CCATGAAATGAAATAATTTAGGAAAGGCTCTAT-TTATAGGGTTTGTGAA-TTAGGGATCTTAAATTATAAAAATAGAGATTATATTGCCTTTATTT--------------------ATAGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAATACGGTTGATTTTCATAAAGAACTTTTTCTTATGACAGAAGGAAGTTCGACTGTAACTTATTTTTACATTGATAAGAACAACGATAGCATACCAAGTGGATGAC----------TC--AATATTT-TCCCTA--TA--CTTCACAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCAC
droEle1 scf7180000491214:1345590-1345870 + TTCA----------CAATGAATTGAAATATTT-AGCT--TTGCGTATTTCAATTAGACTTTT--------------------------------------------------------------------------------------------------------------------CTAAAAAGTGGTTCCATTTAATTGAGTTGTACTGTACTACCTTAACGCAGAAGCAAATAGGATTACAAGATTGATACA-AATTAATACAAATATTTATCAGTACGTTCA------------------------------------------------ATTG------------------TTAAA--CAAAT-----------------AGATAACATACCA---------------------------------------------------------------------AGTGAATGATTAATGTTTGCTG--CAATTTTTCAACTG--TAC-CTTTGCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCAC
droRho1 scf7180000780084:335433-335741 + TTCG----------CCATGAGATGAAATACTT-AGCT--GTGTGTAT-TTTAATGGTTTGCTTA-TCACGG---------------------------------------------------------------------------------ATACAAACTTTTTAAATATAACTTTCCTTAAAAATGGTTCTACTTATTTAAGTAGTACTATACTACTTTGATCCATACGCAAATAT--------AATTGATAAA-CATGTATAAAAATATTTATCA------------------------------------------------------------------------------GTTAAA--CTGATAAAAGCACTATTGATTTTGATTACATACCT---------------------------------------------------------------------GGTCGATGACTAACGTTTGCTC--CATATTT-TCGCTG--TA--CTTTGCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCAC
droFic1 scf7180000453948:2447594-2447921 + TTCG----------TCATAAAATGAAATTTGT-GAAA--CTAATTAT-TTTACTGGATTGCTTAAGGTCGA---------------------------------------------------------------ACCAAAAAAACTATAT-------------------A-------------------------------------------------------------------------TGAAATCAATAAACGACTAATACGAATATTAATTTGTACACCTAGAATAACTTTACTAATCTTACCAAAGTATTGTTTATCAATATTACAACATCGATAAATAAAATGTATTATTTAAAGAGTGATAAGAACACTATTGACTTTGATAACATACCT---------------------------------------------------------------------TTTCCATGACTAACTGTTGCTC--CATTTTTATTATTATTA-T-TCCTGCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCAC
droKik1 scf7180000302470:1423210-1423370 - TTCAAACTATTTCGCAATGAAATGAAATT-------------------------------------------------------------------ATACTGTCC-CACTTATAG----ATACTTATTTTGGTTCC-------------------------------------------------------------------------------TT-------------------------------TTGATT----------------------------------GA---------------TAATAG-------TTTATA-----------------------------------------------------------------------ACCT--------------------------------------------------------------------------------------TGCCC--CTTT--------TG--TA--CCTTGCAGGGAAT--TGCATTGAGTTAGCGCAGAGATGGCCGATGAAGCACAAGCACCAC
droAna3 scaffold_13266:13619709-13619783 + CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--------------------------------------------------------------------------------------TGTCT--GACA------------T-TCGCTTGCAGGGAAT--TGCATTGAGTAAGCGGAGAAATGGCCGATGAAGCACAAGCACCAC
droBip1 scf7180000396759:2516800-2516862 - AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------C-T-TTTTGCAGGGAAT--TGCATTGAGTAAGCGGAGAAATGGCCGATGAAGCACAAGCACCAC
dp5 3:16578542-16578601 - TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGCAGGAAAT--TGCATTGAGTTAGCGCAGAAATGGCCGACGAAGCACAAGCACCAC
droPer2 scaffold_4:183094-183153 + TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGCAGGAAAT--TGCATTGAGTTAGCGCAGAAATGGCCGACGAAGCACAAGCACCAC
droWil2 scf2_1100000004822:902859-902909 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGGGAAT--TGAATTGT-----AGCAGAAATGGCCGATGAAGCACAAGCACCAC
droVir3 scaffold_12875:7643810-7643870 - AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCACGCAGGGAAT--TGCATTGATTAAGCGTAGAAATGGCCGACGAAGCACAAGCACCAC
droMoj3 scaffold_6496:19702219-19702270 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGAAT--TGCATTGAGTAAGCGGAGAAATGGCCGATGAAGCACAAGCACCAC
droGri2 scaffold_15245:1170077-1170149 - TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--AACA---------G-TT-T-TGTTGCAGGGAATTTTGCATTGAGTAAACGCAGAAATGGCCGACGAAGCACAAGCACCAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTCA----------AAATGGCGTGAAATGGCT-AGCA--CTGCC------------------AATTATCGAA---------------------------GTTTTT-AACATATGT----ATATCTATTCTGATAGCCAAGAAAACATAACGGTTACCAACTTTCTATATACG--------------------------------TAGCAATTTATTA-------------------------------TTGATG----------------------------------AA---------------TAACAA-------ATTATCGATAGTACTTCACCGATAA--------------------------------------GATTCTGTTAACACACAT--------------------------------------------------------------------------------------TACACATTACA------------T-T-TCTTTCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............AAATGGCGTGAAATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................AA-------ATTATCGATAGTACTTCAC...........................................................................................................................................................................................................................................2111.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGAAAGCGCAGAGATGGCC...................2611.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCAGAGATGGCCGAT................1911.00100000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGGCCGATGAAGCACAA.......2111.00100000000000100000
droSec2
TTCA----------AAATGGCGTGAAATGGCT-AGCA--CTGCC------------------AATTATCGAA---------------------------GTTTTT-AATATATGT----ATATCTATTCTGATAGCCAAGAAAACATAACGGTTACCAACTATTTATATACG--------------------------------CCGCAATTTATTA-------------------------------TTGATG----------------------------------AA---------------TAATAA-------ATTATCGATAGTACTTCACCGATAA--------------------------------------GATTCTGTTAACATACAT--------------------------------------------------------------------------------------TGCTC--TACA------------T-T-TCTCTCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCAGAGATGGCCGATGAAGC...........2413.0030201
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGAAAGCGCAGA..........................1911.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAGCGCAGAGATGGCC...................2311.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCCGATGAAGCACA........1811.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGAAAGCGCAGAGATGGCC...................2611.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGCCGATGAAGC...........1811.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAGAGATGGCCGATGAAGCAC.........2511.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCGATGAAGCACAA.......1811.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCAGAGATGGCCGAT................1911.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT--TGCATTGAGAAAGC...............................1811.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCGCAGAGATGGCCGATGAA.............2311.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGAAAGCGCAGAGATGGCC...................2211.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAGAGATGGCCGATGAAG............2111.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAGAGATGGCCGATG...............1911.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGGCCGATGAAGCA..........1811.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGCGCAGAGATGGCCGATGAAG............2711.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT--TGCATTGAGAAAGCGCAGAG.........................2411.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCGATGAAGCACAAG......1911.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAGATGGCCGATGAAGCA..........2211.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCCGATGAAGCACAA.......1911.0010100
dm3
TTCA----------AAACGGCGTGAAATGGCT-AGCA--CTCTA------------------AATTATTGAA---------------------------GTTTTC-AACATATGT----ATATCTAATCTGATAGCCAAGAAAACATAATGGTTACCAACTTTCCATATACA--------------------------------CCGTAATTTATTA-------------------------------TTGATG----------------------------------AA---------------TATCAA-------ATTATCGATAGTACTTCCCCGATAA--------------------------------------GATTCTGTTAACACACAT--------------------------------------------------------------------------------------TGCTC--TACT------------T-T-TCTATCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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droEre2
TTCA----------AAATGGCGTGAAATGGTT-AGCA--TTGCAATT-TGTATTCGACTGCTAA-TATCGGA---------------------------GTTTTC-ATCAAATGTACATATATCTATTATGA-AGCTAAGAAAACGTAATGGTT-CTAACTTTT------------------------------------------------------------------------------------------------------------------------------------------------CAA-------GTTATCAATAGTACTGCTCCGATAA--------------------------------------GATCCTGTTAACACACAT--------------------------------------------------------------------------------------TGCTC--TACA------------T-T-TCTTTCAGGGAAT--TGCATTGAGAAAACGCAGAGATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCAGAGATGGCCGATG...............2011.0010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGATGGCCGATGAAGCACA........2311.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGCATTGAGAAAACGCAGAGATGGCC...................2811.0010100000
................................................TGTATTCGACTGCTAA-TATCGGA---------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGCCGATGAAGC...........1811.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGATGGCCGATGAAG............1811.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAACGCAGAGATGGCCGATG...............2511.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGCCGATGAAGCAC.........2011.0010000100
droYak3
TTCG----------AAATGGCTTGAAATGCTT-AACA--TTGCAACT-TCTATTTTACTGCTAA-TATCGGA---------------------------GTTTCC-ATTATATGTACATATATCTATTCTGATAGCCAAGAAAACTTAATGGCT-TTAACTTTT-------G--------------------------------CTGTTATTTATTA-------------------------------ATGAAG----------------------------------AA---------------TACCAA-------GTTATCAATGGTACTTCTCTGATAA--------------------------------------GATCCTGCTAACACACAT--------------------------------------------------------------------------------------TGCTC--TATT------------T-TCCTTTTCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--TGCATTGAGAAAGCGCAGAGATGGCC...................2913.00300000030000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGAGAAAGCGCAGAGATGGCC...................2412.00200000020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAGCGCAGAGATGGCC...................2312.00200000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGCATTGAGAAAGCGCAGAGATGGCC...................2812.00200000020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGCGCAGAGATGGCCGATGAAGC...........2811.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCGCAGAGATGGCCG..................2211.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGAGAAAGCGCAGAGAT.......................2011.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAT--TGCATTGAGAAAG................................1911.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAGAGATGGCCGATGAAGCACA........2511.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAGCGCAGAGATGGCCGAT................2611.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGCGCAGAGATGGCCGATGAAG............2611.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGCATTGAGAAAGCGCAGA..........................2111.00100000010000
.................................................................................................................................................................................................................ATTTATTA-------------------------------ATGAAG----------------------------------AA---------------TACCAA-------..............................................................................................................................................................................................................................................................2211.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCAGAGATGGCCGAT................1911.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGAAAGCGCAGAGATGGCCGAT................2511.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGAAAGCGCAGAGATGGC....................2111.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAGAGATGGCCGATGA..............1911.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGCGCAGAGATGGCC...................2011.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCGCAGAGATGGCC...................2111.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TGCATTGAGAAAGCGCAGAGATGGCC...................2711.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAGATGGCCGATGAAGC...........2111.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCAGAGATGGCCGATGAAGC...........2411.00100000010000
droEug1
AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------T-G-CTTTACAGGGAAT--TGCATTGAGAGAGCGCAGAAATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotal
No Reads
droBia1
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotal
No Reads
droTak1
TTCG----------CCATGAAATGAAATAATTTAGGAAAGGCTCTAT-TTATAGGGTTTGTGAA-TTAGGGATCTTAAATTATAAAAATAGAGATTATATTGCCTTTATTT--------------------ATAGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAATACGGTTGATTTTCATAAAGAACTTTTTCTTATGACAGAAGGAAGTTCGACTGTAACTTATTTTTACATTGATAAGAACAACGATAGCATACCAAGTGGATGAC----------TC--AATATTT-TCCCTA--TA--CTTCACAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotal
No Reads
droEle1
TTCA----------CAATGAATTGAAATATTT-AGCT--TTGCGTATTTCAATTAGACTTTT--------------------------------------------------------------------------------------------------------------------CTAAAAAGTGGTTCCATTTAATTGAGTTGTACTGTACTACCTTAACGCAGAAGCAAATAGGATTACAAGATTGATACA-AATTAATACAAATATTTATCAGTACGTTCA------------------------------------------------ATTG------------------TTAAA--CAAAT-----------------AGATAACATACCA---------------------------------------------------------------------AGTGAATGATTAATGTTTGCTG--CAATTTTTCAACTG--TAC-CTTTGCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotal
No Reads
droRho1
TTCG----------CCATGAGATGAAATACTT-AGCT--GTGTGTAT-TTTAATGGTTTGCTTA-TCACGG---------------------------------------------------------------------------------ATACAAACTTTTTAAATATAACTTTCCTTAAAAATGGTTCTACTTATTTAAGTAGTACTATACTACTTTGATCCATACGCAAATAT--------AATTGATAAA-CATGTATAAAAATATTTATCA------------------------------------------------------------------------------GTTAAA--CTGATAAAAGCACTATTGATTTTGATTACATACCT---------------------------------------------------------------------GGTCGATGACTAACGTTTGCTC--CATATTT-TCGCTG--TA--CTTTGCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotal
No Reads
droFic1
TTCG----------TCATAAAATGAAATTTGT-GAAA--CTAATTAT-TTTACTGGATTGCTTAAGGTCGA---------------------------------------------------------------ACCAAAAAAACTATAT-------------------A-------------------------------------------------------------------------TGAAATCAATAAACGACTAATACGAATATTAATTTGTACACCTAGAATAACTTTACTAATCTTACCAAAGTATTGTTTATCAATATTACAACATCGATAAATAAAATGTATTATTTAAAGAGTGATAAGAACACTATTGACTTTGATAACATACCT---------------------------------------------------------------------TTTCCATGACTAACTGTTGCTC--CATTTTTATTATTATTA-T-TCCTGCAGGGAAT--TGCATTGAGAAAGCGCAGAGATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotal
No Reads
droKik1
TTCAAACTATTTCGCAATGAAATGAAATT-------------------------------------------------------------------ATACTGTCC-CACTTATAG----ATACTTATTTTGGTTCC-------------------------------------------------------------------------------TT-------------------------------TTGATT----------------------------------GA---------------TAATAG-------TTTATA-----------------------------------------------------------------------ACCT--------------------------------------------------------------------------------------TGCCC--CTTT--------TG--TA--CCTTGCAGGGAAT--TGCATTGAGTTAGCGCAGAGATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotal
No Reads
droAna3
CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--------------------------------------------------------------------------------------TGTCT--GACA------------T-TCGCTTGCAGGGAAT--TGCATTGAGTAAGCGGAGAAATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAAGCGGAGAAATGGCCG..................2114.004000013
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGTAAGCGGAG...........................1814.004200002
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGTAAGCGGAGAAATGGCC...................2614.004100003
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGAAATGGCCGATGAAGC...........2214.004000004
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTAAGCGGAGAAATGGCCGATGA..............2712.002000002
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAAGCGGAGAAATGGCCGATG...............2412.002000002
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGTAAGCGGAGAAATGGCCG..................2712.002000002
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGTAAGCGGAGA..........................1812.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGCCGATGAAGCACAAGCA....2312.002000002
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT--TGCATTGAGTAAGCGGA............................2112.002000020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TGCATTGAGTAAGCGGAG...........................1911.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAAGCGGAGAAATGGCCGAT................2311.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGCCGATGAAGCACAAGC.....2211.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGGAGAAATGGCCGATGAAGC...........2411.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCGGAGAAATGGCCGATGAAG............2511.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAAGCGGAGAAATGGC....................1911.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGGAGAAATGGCCGATG...............2011.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTAAGCGGAGAAATGGCCG..................2311.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCGGAGAAATGGCC...................1811.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGATGAAGCACAAGCACC..2111.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT--TGCATTGAGTAAGCGGAGA..........................2311.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAT--TGCATTGAGTAAGCGGAGAA.........................2511.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGAAATGGCCGATGAAG............2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGTAAGCGGAGAAATGGCC...................2311.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT--TGCATTGAGTAAGCGGAG...........................2211.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAAGCACAAGCACCG.1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAAGCGGAGAAATGGCCGATGAA.............2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGCATTGAGTAAGCGGAGAAA........................2311.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTAAGCGGAGAAATGGCC...................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGATGAAGCACAAGC.....1911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCCGATGAAGCACAA.......1911.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGTAAGCGGAGAAAT.......................2211.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAT--TGCATTGAGTAAGCGG.............................2111.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGCATTGAGTAAGCGGAGAAATGGC....................2711.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAAT--TGCATTGAGTAAGCGGA............................2611.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAATGGCCGATGAAGCACAAGC.....2611.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGCATTGAGTAAGCGGA............................1911.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGAAATGGCCGATGAAGCACAAGC.....2811.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCGATGAAGCACAAGCACC..2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGATGAAGCACAAG......1811.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGATGAAGCACAAGCACCA.2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCGGAGAAATGGCCGATGAAGCA..........2711.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGTAAGCGGAGA..........................1911.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAATGGCCGATGAAGC...........2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCGGAGAAATGGCCG..................1911.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAAGCGGAGAAATGGCCGAT................2411.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAAGCACAAGCACCAC2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGGAGAAATGGCCGATGAAGCACA........2711.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGAAATGGCCGATGAAGCACAAGC.....2711.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAAGCGGAGAAATGGCC...................2011.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCCGATGAAGCACA........1811.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAATGGCCGATGAAGCACA........2311.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGCCGATGAAGCACA........1911.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGGCCGATGAAGCACAAGCACC..2711.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGTAAGCGGAGAAAT.......................2111.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGTAAGCGGAGAA.........................2011.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGTAAGCGGAGAAATGGC....................2211.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGTAAGCGGAGAA.........................1911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGAAATGGCCGATGAAGCACA........2511.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTAAGCGGAGAAAT.......................1811.001100000
droBip1
AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------C-T-TTTTGCAGGGAAT--TGCATTGAGTAAGCGGAGAAATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotal
No Reads
dp5
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGCAGGAAAT--TGCATTGAGTTAGCGCAGAAATGGCCGACGAAGCACAAGCACCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGCATTGAGTTAGCGCAGAAATGGCC...................2813.0030002010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTAGCGCAGAAATGGCC...................2213.0030000111000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGTTAGCGCAGAAA........................2112.0020000002000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGTTAGCGCAGAAAT.......................2212.0020100001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGTTAGCGCAGAA.........................2012.0020000011000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCCGACGAAGCA..........1812.0020000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGCATTGAGTTAGCGCA............................1912.0020000011000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGCAGAAATGGCCGACGAAGCACA........2712.0020101000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCCGACGAAGCACAAGCACC..2411.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCCGACGAAGCACA........2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTAGCGCAGAAATGGCC...................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAT--TGCATTGAGTTAGC...............................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--TGCATTGAGTTAGCGCA............................2011.0010000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGCAGAAATGGCCGACGAAGC...........2411.0010000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAT--TGCATTGAGTTAGCGCA............................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGACGAAGCACAAGCACCA.2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TGCATTGAGTTAGCGCAGAAA........................2211.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCCGACGAAGCACAAGC.....2311.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAT--TGCATTGAGTTAG................................1911.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGTTAGCGCAGAAATGGCC...................2611.0010001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGTTAGCGCAGA..........................1911.0010000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGAGTTAGCGCAGAAA........................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCCGACGAAGCACAAGCACC..2611.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGTTAGCGCAGAAATGGTA...................2311.0010000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAAT--TGCATTGAGTTAGC...............................2111.0010001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTAGCGCAGAAATGGCCGACG...............2611.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAGAAATGGCCGACG...............1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAT--TGCATTGAGTTAGC...............................1811.0010010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTAGCGCAGAAATGGCCGAC................2311.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGCAGAAATGGCCGACGAAG............2311.0010001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAATGGCCGACGAAGCAC.........2111.0010001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCCGACGAAGCACAA.......2111.0010000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGCAGAAATGGCCGACGAA.............2211.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGACGAAGCACAAG......1811.0010000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGCCGACGAAGCACAAGC.....2211.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAAT--TGCATTGAGTTAG................................2011.0010100000000
droPer2
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGCAGGAAAT--TGCATTGAGTTAGCGCAGAAATGGCCGACGAAGCACAAGCACCACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGCAGAAATGGCCGACGAAG............2311.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCCGACGAAGCACAAGCAC...2311.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAATGGCCGACGAAGCA..........2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAT--TGCATTGAGTTAGCGC.............................2011.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAGAAATGGCCGACGAAGCA..........2411.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTAGCGCAGAAATGGCC...................2011.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TGCATTGAGTTAGCGCAGA..........................2011.001001000
droWil2
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGGGAAT--TGAATTGT-----AGCAGAAATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGAATTGT-----AGCAGAAATGGCC...................2311.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCCGATGAAGCACAAGCACC..2611.00110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-----AGCAGAAATGGCCGAT................1911.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAAATGGCCGATGAAGCA..........2211.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGAATTGT-----AGCAGAAATGGCCGATGAA.............2911.00110000
droVir3
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCACGCAGGGAAT--TGCATTGATTAAGCGTAGAAATGGCCGACGAAGCACAAGCACCACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCCGACGAAGCAC.........1912.002001000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT--TGCATTGATTAAGCGC.............................2012.002000000000000000000000000000001000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGGCCGACGAAGC...........1812.002000000000000000000001000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCCGACGAAGCACAAGCA....2212.002001000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCCGACGAAGCACA........2012.002001000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCGACGAAGCACAA.......1812.002000000000000000000000000000002000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGCATTGATTAAGCGC.............................1811.001000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCCGACGAAGCACAA.......2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGCCGACGAAGCACAA.......2011.001000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCCGACGAAGCACAAGC.....2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCCGACGAAGCACAA.......1911.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGCCGACGAAGCACA........1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCGACGAAGCACAAGCACCA.2411.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAAT--TGCATTGATTAAGCTC.............................2311.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGCCGACGAAGCACAAG......2111.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGGCCGACGAAGCACAAGCA....2511.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--TGCATTGATTAAGCGC.............................1911.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCCGACGAAGCACAAGT.....2311.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGAAT--TGCATTGAGTAAGCGGAGAAATGGCCGATGAAGCACAAGCACCACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT--TGCATTGAGTAAGCGGA............................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGAGTAAGCGGAGAAATGGC....................2311.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGCATTGAGTAAGCGGAGAAATGGC....................2711.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGTAAGCGGAGAAATGGCC...................2611.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGAGTAAGCGGAGAAAT.......................2211.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGCATTGAGTAAGCGGAGAAAT.......................2411.001100000
droGri2
TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--AACA---------G-TT-T-TGTTGCAGGGAATTTTGCATTGAGTAAACGCAGAAATGGCCGACGAAGCACAAGCACCACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGCCGACGAAGCACAAGCACC..2511.00110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAAATGGCCGACGAAGCACAAGC.....2711.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCCGACGAAGCACAAGCACCA.2711.00101
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAACGCAGAAATGGCCGAC................2211.00110

Generated: 05/19/2015 at 05:43 AM