ID:

dsi_11577

 Coordinate:

2l:22494052-22494201 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
mature
  1. dsi_11577  2l:22494169-22494194 -
  2. dsi_10078  2r:1323516-1323541 -
star
  1. dsi_11577  2l:22494130-22494159 -
  2. dsi_10078  2r:1323477-1323506 -

Sense Strand Reads

CCTATCTATCGATATCCCAGAAAAATAATGAAACTTCGCGTTCGCATTTGCACTAGCTGAGTACCGAGTATCATATAGTTGGAAAACTCAGCTATTTTCCAATTTGATTTCAAGATAAAGTACACATTGCAATATTGCAATAAGTAACAAATTTGTTATATTTCAAATATATGTTTTTTAACGGTTTATCTTTCTTACAGATATTTACTAACATCTTTATTTACAAATATCCATTAAAATGTGTGGTAAG
*********************************************************........(((.((((...((((((((((........)))))))))))))))))...........******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M053
female body
 M024
male body		 M023
head
 SRR553486
Makindu_3 day-old ovaries
.........................................................TGAGTACCGAGTATCATATAGTTGGA....................................................................................................................................................................... 26 0 2 42.50 85 51 31 0 1 1 1 0 0 0
.........................................................TGAGTACCGAGTATCATATAGTTGGAA...................................................................................................................................................................... 27 0 2 9.50 19 9 9 1 0 0 0 0 0 0
...............................................................................................................................................................................TTTTAACGGTTTATCTTTCTTACAGA................................................. 26 0 2 1.00 2 0 2 0 0 0 0 0 0 0
............................................................................................TATTTTCCAATTTGATTTCAAGATAAAGTA................................................................................................................................ 30 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................GGAGTACCGAGTATCATATAGTTGGAA...................................................................................................................................................................... 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................TTGCAATAAGTAACAAATTTGTTATA.......................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................TCTATTTCAAATATATGTTTTTCT...................................................................... 24 3 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................................................................................TCAACTATTTTCCAATTTGATTTCAAGAT...................................................................................................................................... 29 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................TGAGTACCGAGTATCATATAGTTGGAAAAC................................................................................................................................................................... 30 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.........CGATATCCCAGAAAAATAATGAAAC........................................................................................................................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................TAGCTGAGTACCGAGTATCATATAGTTGGA....................................................................................................................................................................... 30 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...............CCCAGAAAAATAATGAAACTTCGCGTT................................................................................................................................................................................................................ 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.........CGATATCCCAGAAAAATAATGAAACT....................................................................................................................................................................................................................... 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.........................................................TGAGTGCCGAGTATCATATAGTTGGA....................................................................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.......................................................................................TCAGCTATTTTCCAATTTGATTTCAAGA....................................................................................................................................... 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.........................................................TGAGTACCGGGTATCATATAGTTGGA....................................................................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................TGAGTACCGAGTATCATATAGTTG......................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................TGAGTACCGAGTATCATATAGTT.......................................................................................................................................................................... 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................TGAGTACCGAGTATCATATAGTTGGATA..................................................................................................................................................................... 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................TTATTACCGAGTATCATATAGTTGGA....................................................................................................................................................................... 26 2 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTTAACGGTTTATCTTTCTTACAGA................................................. 25 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.....................................................................GTCATATAGTTGGAAAACTCAGCT............................................................................................................................................................. 24 1 2 0.50 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................TGTTTTTTAACGGTTTATCTTTCTTACAGA................................................. 30 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTTTTAACGGTTTATCTTTCTTACAGA................................................. 28 0 2 0.50 1 0 1 0 0 0 0 0 0 0
................................................TGCACTAGCTGAGTACCGAGTATCATA............................................................................................................................................................................... 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0
..............TCCCAGAAAAATAATGAAACTTCGCG.................................................................................................................................................................................................................. 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................TGAGTACCGAGTATCATATAGTTGGAAT..................................................................................................................................................................... 28 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................TGAGTACCGAGTATCATATATTTGGA....................................................................................................................................................................... 26 1 2 0.50 1 0 0 0 1 0 0 0 0 0
.........................................................TGAGTACCGAGGATCATATAGTTGGA....................................................................................................................................................................... 26 1 2 0.50 1 0 0 0 0 1 0 0 0 0
.........................................................TGAGTACCGAGTATCATATAGTTGGG....................................................................................................................................................................... 26 1 2 0.50 1 0 0 0 0 1 0 0 0 0
.........................................................TGAGTACCGAGTATCACATAGTTGGAA...................................................................................................................................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................................GTTCGCATTTGCACTAGCTG............................................................................................................................................................................................... 20 0 5 0.40 2 0 0 0 0 0 0 0 2 0
.......................................................................................................................................................................................................AATATTTACTAACATCTTT................................ 19 1 3 0.33 1 0 0 0 0 0 1 0 0 0
..................................TTCGCGTTCGCATTTGCACTAGC................................................................................................................................................................................................. 23 0 4 0.25 1 0 0 1 0 0 0 0 0 0
....................................CGCGTTCGCATTTGCA...................................................................................................................................................................................................... 16 0 4 0.25 1 0 0 1 0 0 0 0 0 0
.........CGATATCCCAGAAAAATAATGAAA......................................................................................................................................................................................................................... 24 0 6 0.17 1 0 0 0 0 0 0 0 0 1
..TATCTATCGATATCCCAGAAAAATAA.............................................................................................................................................................................................................................. 26 0 8 0.13 1 0 0 0 1 0 0 0 0 0
..TATCTATCGATATCCCAGAAAAACAA.............................................................................................................................................................................................................................. 26 1 9 0.11 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................CCCTTAAAATGAGTGGT... 17 2 11 0.09 1 0 0 1 0 0 0 0 0 0
......TATCGATATACCAGAAAAATAATGAA.......................................................................................................................................................................................................................... 26 1 13 0.08 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................ATAGTGCAATAAGTA........................................................................................................ 15 1 14 0.07 1 0 0 0 1 0 0 0 0 0
.........CAATATCCCAGACAAATAATGAAA......................................................................................................................................................................................................................... 24 2 18 0.06 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................GTAAAATGTGTGGTA.. 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0
........................ATAATGAAACTTCGA................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GGATAGATAGCTATAGGGTCTTTTTATTACTTTGAAGCGCAAGCGTAAACGTGATCGACTCATGGCTCATAGTATATCAACCTTTTGAGTCGATAAAAGGTTAAACTAAAGTTCTATTTCATGTGTAACGTTATAACGTTATTCATTGTTTAAACAATATAAAGTTTATATACAAAAAATTGCCAAATAGAAAGAATGTCTATAAATGATTGTAGAAATAAATGTTTATAGGTAATTTTACACACCATTC
********************************************************************************************************************************........(((.((((...((((((((((........)))))))))))))))))...........********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR902008
ovaries
...........................................................................................................................................................................................................................AAATGTTTATAGGTAATTTTACACAC..... 26 0 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................................ATGTGTAACGTTATA................................................................................................................... 15 0 4 0.50 2 2 0 0 0 0 0 0
.......................................................................................................................CATGTGTAACGTTAT.................................................................................................................... 15 0 3 0.33 1 1 0 0 0 0 0 0
.............................................................................................................................................................................AAAAAATTGCCAAAT.............................................................. 15 0 3 0.33 1 0 1 0 0 0 0 0
...................................AGCGCAAGCGTAAACGTGATCGACT.............................................................................................................................................................................................. 25 0 4 0.25 1 1 0 0 0 0 0 0
.................................................................................................................AAATTTCATGTGTAACGTTATAT.................................................................................................................. 23 3 5 0.20 1 0 0 1 0 0 0 0
..ATAGATAGCTATAGGGTCTTTTT................................................................................................................................................................................................................................. 23 0 20 0.15 3 1 2 0 0 0 0 0
.................................................................................................................CAATCTCATGTGTAACGTT...................................................................................................................... 19 2 7 0.14 1 0 0 1 0 0 0 0
................................................................................................................ATAATTTCATGTGTAACGTTAT.................................................................................................................... 22 3 8 0.13 1 0 0 0 1 0 0 0
....AGATAGCTATAGGGTCTTT................................................................................................................................................................................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0
....GGATAGCTATAGGGTCTTTTTGTTACT........................................................................................................................................................................................................................... 27 2 10 0.10 1 0 0 0 0 0 1 0
.......TTGCTATAGGGTCTTTTTAT............................................................................................................................................................................................................................... 20 1 16 0.06 1 0 0 1 0 0 0 0
.........GTTATAGGGTCTGTTTATTACTTT......................................................................................................................................................................................................................... 24 2 18 0.06 1 0 0 0 0 1 0 0
..........CTATAGGGTCCTTTTATT.............................................................................................................................................................................................................................. 18 1 19 0.05 1 1 0 0 0 0 0 0
......................................CGAAGCGTAAACGTGAT................................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0
..........TTATAGGGTCTGTTTATTACTTT......................................................................................................................................................................................................................... 23 2 20 0.05 1 0 0 0 0 0 0 1
....................................................................................................................................................................................................TCTCTATAAATGATCGT..................................... 17 2 20 0.05 1 0 0 1 0 0 0 0
.........................................................................ATATCAACCTTTTGA.................................................................................................................................................................. 15 0 20 0.05 1 0 0 0 0 1 0 0
............................................................................................................................................................................AAAAAAATTGCCAAAT.............................................................. 16 1 20 0.05 1 0 0 0 1 0 0 0
...TAGATAGCTATAGGGTCTTTTT................................................................................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 1 0 0
...TAGATAGCTATAGGGTCTTT................................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:22494002-22494251 - dsi_11577 CCT-A---TCTATCGATATCCC-----AGA---------AAAATAATGAAACTTCGCGTTC--------------------------------------------------------------GCATTTGCACT---------------------------AGCTGAGTACCGAGTATCATATA-GTTGGAA----AACTCAGCTATT---------------------------------TTCCAATTTGATTTCAAGATAA----------------------------------------------------AGTACACATTGCAATATTGCAATAAGTAACAAATTTGTTATATTTCAAATATATGTTTTTT------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-GGTTTA--------TCTTTCTTACAG--------ATATTTACTAACATCTTT---------------------------------------------------------------------------------------------------------ATTT--ACAAAT---ATCCATTA-----------AAATGTGTGG--T-------AAG
droSec2 scaffold_6:104430-104687 + CCT-A---TCTATCGATATCCC-----AGT---------AAAATAATGAAACTTCGCGATC--------------------------------------------------------------GCATTTCCACT---------------------------AGCTGAGTACCGAGTATCATATA-GTTGGAA----AACTCAACTATT---------------------------------TTCCAATTTGATTTCAAGATAA----------------------------------------------------AGTACACATTGCAATATTGCAATAAGTAACAAATTTGTTATATTTCAAATATATGTTTTTT------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-GGTTTA--------TCTTTCTTACAG--------ATATTTACAAACATCTTTAT---------------------------------------T-------------------------------TATCC----------------------------AT-CTTTAAAT---ATCCATTA-----------AAATGTGTGG--T-------AAG
dm3 chr3RHet:2476400-2476697 + TCT-A---TCTATCGATATCCC-----AGA---------AAAATATTGAAATTTCGCGTTC--------------------------------------------------------------GCATTTTCACA---------------------------AGCTGATTACTGAGTATCATATA-GTCGGAA----AACTCGACTATAGC-ATTCTTGT----------------------TTTCAATTTGAGTTCAAGATAAAATTCGT--------GGAGACTTGCCTTGG---GGAGAGACTTGACTTGGGAAGTAAACATTTCAATATT---ATAAGTAACAAAATTATTATTTTTCAAATATATGTTTTTA------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-GGTTTA--------TATTATTTACAG--------ATATTTACTAACATCTTT---------------------------------------------------------------------------------------------------------AATT--ACAAAT---ATCTATAA-----------AAATGTGTGG--T-------AAG
droEre2 scaffold_4845:17382555-17382804 + AAT-T---TTCACCGATATCCC-----AGA---------AATTT-ATGAAATTTCTCTTTC--------------------------------------------------------------GCAATTCCACT---------------------------AGCTGAGTTATGGTTATCTGATA-GTCGGGG----AACTCGACCATAAC-ATTCTATTTTGGTTTTATT---TTTACT----------------TTAGATAAAATATTT--------TTCAATTTACCTT---------------------------------------------------------------------AGAACAAATAT-----------------------------------------------------------------------------------------------------GGCTAAC-----------------------------------------------------------------------------C-----------CC------------------------------------------------GTCAAATTCATGTGC------------TTCAACTTTCTCCCCGACTAATCTTGTGCATAATAACG-------T-------------TAT---TTCTATAA-----------AAATGCTTTG--G-------TAA
droYak3 2L:18670956-18671184 + CAATT---TCTTTCGATATGCC-----AGA---------AATATGTTGAATTTTCTTGTTC--------------------------------------------------------------GCACTTTCACC---------------------------AACTGAGTAACGGGTATCTGATA-GTTGTGA----AACGCGACTATAGC-GTTCTTTCGTCTCTTTATT--------------------GTGTTTGCGATAG------------------------------------------------------------------------AACTAATAAAAAATATATAAGGCTTCAAGTCTATTTT-TTC------------------------------------------------------------------------------------------------------------------------------------AA--------------------------T-AGTGAATATTA-------TTTTATAG--------TTACTTGATAGCAT---------------------------------------------------------------------------------------------------------------T-CATTAAAT---ACATATTG-----------AAT------------------TG
droEug1 scf7180000409804:2869743-2870004 + GTT-AATATCTATCGATTTACA-----AAAGATTAAATTAAGGTTATAAGGCTCCACATGG--GCAGTGACGTCACTATAAGCATACTCAACATACTTCCTCTGACAATAGGTGGCTCCTTGTGAATTTCCACTAGCAAAATTAATATTTTAAAATTGTGTAAAACAGTAACGGGTATCTTATA-GTCGCGG----CACTCGACTATAGC-GTTTCCTCTTGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAA--------ATGGTTTCCTATATCTTTTT--------------------------------------------------------------------------------------------------------TTC--TCTTTC---ATCCATTT-----------AAAT-----G--T-------AAA
droBia1 scf7180000301367:32213-32443 + AAT-T---TCC---------------------------------------------CTTTT--------------------------------------------------------------G--CTTCCTTA---------------------------AGCTGAGTAACGGGTATCTAATA-GTCGAGG----CACTCGGCTATAGC-GTTCTACCTTGTTTTTTCA-TATTTTCA--------------------AT--------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------AATGAATAATGAGTACCATTTTAATGAGTTCCTA----AAAGATTAATTAATTTTTTAAATAACT---------------------T-----------CC------------------------------------------------TACAAATTTTTGTAT------------TTTAGTATTTTTTTTTATTCTTT---TAATAATT-----------TCTTTTTCC--A-------------T-A-----------AAACGAAATT--A-------AAA
droTak1 scf7180000414562:300291-300535 - GATTA---TTAGTCGGGACACC-----AAC---------C--------CGACACAGCGTTC--------------------------------------------------------------GCACTCCCTTT---------------------------AGCTGAGTGACGGGTATTAGATA-GTCGGGACAACAACCCGACTATAGC-GTTCTCTCTTGTTTTAAAT--ACAAAAT-----------GTGAT------------------------------TGTTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAACAA-T-----------------------------------------TAAATAACA--T--AAGATAAATTTGATATGACTAATAATAAATTTATGTTTCGAACATATAAATTTGATATTATATC--ACATTTC---AA-----------ATATATTCAAAT-----A----------------------------------TAT--T-------AAA
droEle1 scf7180000491261:977052-977316 + TGC-A---TTCGTCAG-------------A---------AATATG--TAAATTTACTATTC--------------------------------------------------------------AAAATTAAACC---------------------------AGAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTTAAGAAAGGTTTAAGAATGAAATGGTTGATTGTATAAAAAGCAATGTTGTTTTCAAACCAAATTTTACTGATATGCCGCATTAAATCACTATTCGTTATTAGTTTGGAAT--GCTAAACCAAAT-ACCACATTTTCAA--------------------------T-CGTTTA--------GATTTTAGAGAA--------TTATCTTG----------------------------------------AAAATTTGTACA-------------------------------TTTTA----------------------------TT-GTTTAAAT---ACA-ATTG-----------GAATTTGTGG--T-------ACC
droRho1 scf7180000779479:170846-171098 - TAA-T---TCGAGCGG----CG-----AAA---------AACATA-CAAGAAGGCATATTT----------------------------ATA-------------------------------TTAAGTTGTTT---------------------------AGCTGAGTAACGGGTATCTAATA-GTCGAGG----CACTCGACTATAGC-GTTCTCTCTTGTTTTTACTA--AATTCTTC------AT----------TTTAATGCTAGTAATTTGCAATGATTTGGCTTTGCTTAAAATAACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-AG--------------------AAGTTCGTACAAAT------------------------------------------------AATTCATAAA-------------------------------TCTTA---TA----------------------AT----ATATATAAAAATATAGAAATAATAAACAAAGTATTTGA--C-------AAG
droFic1 scf7180000453831:6135-6207 + TTT-A---CTAACTTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAAATAG----------------------------------------------------TGTATGCTTTA---------AATAAATAGTTAATTTATTATTTTTAAAACAGATGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
droKik1 scf7180000301779:8436-8569 + AAT-G---A----------------------------------------AACTTTGCATATAGTC----------------------------------------------------------G--TCTATATA---------------------------CTGTCACTGC-------TATATATGTCGGAATTATAACTTGGCTGTT---------------------------------TTTCAATATTATTCCATCATTT----------------------------------------------------TTTAGATATAGCCATTTTATATTATTCCAGAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--T-------ATA
droAna3 scaffold_13266:17993827-17993978 - G---------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTATCGGGTATCTTATT-GTGAAAA----AACTCAACTATGGCCACACTTTCTTC-------------------------TTTAATACTAAAAAAA----------------------------------------------------TACTAAAAAATAAG------------------CTTTGTTCTTTATCTTCTAT-TATTCTAT------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-AGGTTG--------CTTTA---------------------------GT-----------------------------------------------------------------------------------------CTTATATATTTA------TATCTA--AT----------------------------------AA--T-------ATC
droBip1 scf7180000396426:45367-45562 - A-----------------------------------------------------------------------------------------------------------------------------------------------------------------GATGAGTACCGGGTATAATATA-GTCGGAA----AACTCGACAATAGCCGTTCTCTCCTTTTTTTTTC-TCCTTTCT--------------------CT--------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------GTGGCTTGCAGCGGGTTATACCAAAT-ACACCCA----AAATGTAGATTAAGTTTGTTGGTGACATAA-T-----------------------------------------CACAAACTT--T--TAAACAA-TTTTTT------------------------------------------------------------TTTACCAATTTCC-------------GTTT--A-------------T-A-----------AAATTAGTTT--G-------AAA
dp5 3:9376078-9376246 - CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTACTGGGTATTTAATA-GTCGGAA----AACTCGACTACATC-TCTTTAGTTTGTTGTTGTAG--TTTTCATT------AA----------TGGAACGACAG---------------------------------------------------------------------TGCAACTGAATGGTGAATTATTATACATATATTCTAA------------------------------------------------------------------------------------------------------------------------------------T------------------------------TTCTA--------CACAACATACA----------------------------------------------------------------------------------------------------------TATACACATGTACACATA------TACAC---ATA---------------------------------TA--C-------ACT
droPer2 scaffold_6:3537866-3537969 - AAT-A---CTTTTATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------TTAAAAATAT----------------------------------------------------TC-----------------------------TATTTTTTTTAATGAAATTAAATATTTTTT------------------------------------------------------------------------------------------------------------------------------------AA--------------------------A-ATTTTA--------AATCCTTTAAAA--------ATATTTTCAACGATTTTA---------------------------------------------------------------------------------------------------------AAAT---------------------------------------A--C-------AAA
droWil2 scf2_1100000004967:2453627-2453783 - TTT-A---TATT-CAATACAAATACCTAGC---------AAAATGATCAAAA-------TC--------------------------------------------------------------GGACTAAAAAT---------------------------AGCCAAGTTATGCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCTTGTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------AAGC------------------------------------------ATGTGAACAGAATT--TTTTA-----------------------AAAATACGTAAA-------------------------------TACAT-----------------------------TTGTTATTAT---AAA-TTTG-----------AAATATTTGTTTTACTGGTCTAT
droVir3 scaffold_12963:995334-995446 - AAT-A---CACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAATATAACGAGCCTTATT--TATATATGTTAATT------------------------------------------------------------------------------------------------------------------------------------TA--------------------------T-TGTTTT--------TTGTTTTTGTAA--------TCTTACATTAATCTTTTG---------------------------------------------------------------------------------------------------------ATTT--ACAGAA---ATTCTACA-----------ACAGGTAG----A-------GTA
droMoj3 scaffold_6496:7292277-7292394 - TTT-A---CTTACTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAAATAT----------------------------------------------------AATTAACAATTTAGCATTGCAATGCATTACATATTT------------------AATATAA------------------------------------------------------------------------------------------------------------------------------------AA--------------------------A-TGATTA--------TACCCTTTGTGA--------GAGTATTTGAAAATTTCT---------------------------------------------------------------------------------------------------------TTTT--ATAAAT-------------------------------------------AT
droGri2 scaffold_15245:12083103-12083207 + ATT-A---GAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTAATTAATTTGTTTTAATTTAAATATATATTTAGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATATTTATATATTT---------------TTTGTTGTTATTAT---T--------------------------------------------------------------------------------------TTATAAAAATA------CCTTTT--AC----------------------------------AA--G-------ATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCT-A---TCTATCGATATCCC-----AGA---------AAAATAATGAAACTTCGCGTTC--------------------------------------------------------------GCATTTGCACT---------------------------AGCTGAGTACCGAGTATCATATA-GTTGGAA----AACTCAGCTATT---------------------------------TTCCAATTTGATTTCAAGATAA----------------------------------------------------AGTACACATTGCAATATTGCAATAAGTAACAAATTTGTTATATTTCAAATATATGTTTTTT------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-GGTTTA--------TCTTTCTTACAG--------ATATTTACTAACATCTTT---------------------------------------------------------------------------------------------------------ATTT--ACAAAT---ATCCATTA-----------AAATGTGTGG--T-------AAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................TGAGTACCGAGTATCATATA-GTTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26242.50850011005103110000000
....................................................................................................................................................................TGAGTACCGAGTATCATATA-GTTGGAA----............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2729.501900000090901000000
....................................................................................................................................................................................................................................................................................................................................................................................TTTT------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-GGTTTA--------TCTTTCTTACAG--------A...................................................................................................................................................................................2621.00200000000200000000
............................................................................................................................................................................................................TATT---------------------------------TTCCAATTTGATTTCAAGATAA----------------------------------------------------AGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................3020.50100000000100000000
...........................................................................................................................................................................................................................................................................................................................................TTGCAATAAGTAACAAATTTGTTATA...........................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000000100000000
....................................................................................................................................................................TGAGTACCGAGTATCATATA-GTTGGAA----AAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3020.50100000010000000000
.............CGATATCCC-----AGA---------AAAATAATGAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000010000000000
.....................................................................................................................................T---------------------------AGCTGAGTACCGAGTATCATATA-GTTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3020.50100000000100000000
...................CCC-----AGA---------AAAATAATGAAACTTCGCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000000100000000
.............CGATATCCC-----AGA---------AAAATAATGAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000000001000000
.......................................................................................................................................................................................................TCAGCTATT---------------------------------TTCCAATTTGATTTCAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100000000001000000
....................................................................................................................................................................TGAGTACCGAGTATCATATA-GTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000010000000000
....................................................................................................................................................................TGAGTACCGAGTATCATATA-GTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTT------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-GGTTTA--------TCTTTCTTACAG--------A...................................................................................................................................................................................2520.50100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................TGTTTTTT------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-GGTTTA--------TCTTTCTTACAG--------A...................................................................................................................................................................................3020.50100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................TTTTTT------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-GGTTTA--------TCTTTCTTACAG--------A...................................................................................................................................................................................2820.50100000000100000000
................................................................................................................................TGCACT---------------------------AGCTGAGTACCGAGTATCATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000000001000000
..................TCCC-----AGA---------AAAATAATGAAACTTCGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000000100000000
....................................................................................................................................................................TGAGTACCGAGTATCATATA-GTTGGAA----T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100000000100000000
....................................................................................................................................................................TGAGTACCGAGTATCATATA-GTTGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100100000000000000
.........................................................GTTC--------------------------------------------------------------GCATTTGCACT---------------------------AGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.40220000000000000000
....................................................TTCGCGTTC--------------------------------------------------------------GCATTTGCACT---------------------------AGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.25100000000001000000
......................................................CGCGTTC--------------------------------------------------------------GCATTTGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1640.25100000000001000000
.............CGATATCCC-----AGA---------AAAATAATGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.17100000001000000000
..T-A---TCTATCGATATCCC-----AGA---------AAAATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.13100000000010000000
..........................................ATAATGAAACTTCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
droSec2
CCT-A---TCTATCGATATCCC-----AGT---------AAAATAATGAAACTTCGCGATC--------------------------------------------------------------GCATTTCCACT---------------------------AGCTGAGTACCGAGTATCATATA-GTTGGAA----AACTCAACTATT---------------------------------TTCCAATTTGATTTCAAGATAA----------------------------------------------------AGTACACATTGCAATATTGCAATAAGTAACAAATTTGTTATATTTCAAATATATGTTTTTT------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-GGTTTA--------TCTTTCTTACAG--------ATATTTACAAACATCTTTAT---------------------------------------T-------------------------------TATCC----------------------------AT-CTTTAAAT---ATCCATTA-----------AAATGTGTGG--T-------AAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACAAACATCTTTAT---------------------------------------T-------------------------------T........................................................................................2011.0011000
dm3
TCT-A---TCTATCGATATCCC-----AGA---------AAAATATTGAAATTTCGCGTTC--------------------------------------------------------------GCATTTTCACA---------------------------AGCTGATTACTGAGTATCATATA-GTCGGAA----AACTCGACTATAGC-ATTCTTGT----------------------TTTCAATTTGAGTTCAAGATAAAATTCGT--------GGAGACTTGCCTTGG---GGAGAGACTTGACTTGGGAAGTAAACATTTCAATATT---ATAAGTAACAAAATTATTATTTTTCAAATATATGTTTTTA------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-GGTTTA--------TATTATTTACAG--------ATATTTACTAACATCTTT---------------------------------------------------------------------------------------------------------AATT--ACAAAT---ATCTATAA-----------AAATGTGTGG--T-------AAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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........................................................................................................................................................................TACTGAGTATCATATA-GTCGGAA----AACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................................................................................................................................................................TACTGAGTATCATATA-GTCGGAA----AAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................CTTGG---GGAGAGACTTGACTTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
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.............................................................................................................................................................................................................................................................................T--------GGAGACTTGCCTTGG---GGAGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TTGG---GGAGAGACTTGACTTGGGAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................TTCGCGTTC--------------------------------------------------------------GCATTTTCACA---------------------------AGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GAGAGACTTGACTTGGGAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TTTTCAAATATATGTTTTTA------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-GGT...................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------------------------------------AATT--ACAAAT---ATCTATAA-----------AA.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TGATTACTGAGTATCATATA-GTCGGAA----............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................ACTTGCCTTGG---GGAGAGACTTGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................ATATA-GTCGGAA----AACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AAATTTCGCGTTC--------------------------------------------------------------GCATTTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2131.0030000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................................................TTGACTTGGGAAGTAAACATTTCAATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................ACAAAATTATTATTTTTCA......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TCGACTATAGC-ATTCTTGT----------------------TTTCAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GACTTGCCTTGG---GGAGAGACTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AGAGACTTGACTTGGGAAGTAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TGG---GGAGAGACTTGACTTGGGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATCCC-----AGA---------AAAATATTGAAATTTCGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................GAGACTTGACTTGGGAAGTAAACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TAAAATTCGT--------GGAGACTTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................TTCGT--------GGAGACTTGCCTTGG---GGAGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TAGC-ATTCTTGT----------------------TTTCAATTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................ACTGAGTATCATATA-GTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTACTAACATCTTT---------------------------------------------------------------------------------------------------------AG.......................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................................................................................................................ATTTGAGTTCAAGATAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
............................GA---------AAAATATTGAAATTTCGCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CGT--------GGAGACTTGCCTTGG---GGAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................AGCTGATTACTGAGTATCATATA-GTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................................................................................................................TCATATA-GTCGGAA----AACTCGACTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GACTTGACTTGGGAAGTAAACATTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
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........................................................................................................................................................................................................................TGT----------------------TTTCAATTTGAGTTCAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TTTCAAATATATGTTTTTA------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-GGTT..................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................C--------------------------------------------------------------GCATTTTCACA---------------------------AGCTGATTACTGAGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TGCCTTGG---GGAGAGACTTGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......................................................................................................................................................................................................................TTGT----------------------TTTCAATTTGAGTTCAAGATAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................TGT----------------------TTTCAATTTGAGTTCAAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TGAGTTCAAGATAAAATTCGT--------GGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TTC--------------------------------------------------------------GCATTTTCACA---------------------------AGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATATTGAAATTTCGCGTTC--------------------------------------------------------------GCATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TATTGAAATTTCGCGTTC--------------------------------------------------------------GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................................................................................................................................................................................................................T--------GGAGACTTGCCTTGG---GGAGAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................TTTTCACA---------------------------AGCTGATTACTGAGTATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TCACA---------------------------AGCTGATTACTGAGTATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TAAAATTCGT--------GGAGACTTGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TTGG---GGAGAGACTTGACTTGGGAAGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CCTTGG---GGAGAGACTTGACTTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................TATA-GTCGGAA----AACTCGACTATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TTCGT--------GGAGACTTGCCTTGG---GGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................TCGACTATAGC-ATTCTTGT----------------------TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TA-GTCGGAA----AACTCGACTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TGAAATTTCGCGTTC--------------------------------------------------------------GCATTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.2530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................ACTCGACTATAGC-ATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAT-T---TTCACCGATATCCC-----AGA---------AATTT-ATGAAATTTCTCTTTC--------------------------------------------------------------GCAATTCCACT---------------------------AGCTGAGTTATGGTTATCTGATA-GTCGGGG----AACTCGACCATAAC-ATTCTATTTTGGTTTTATT---TTTACT----------------TTAGATAAAATATTT--------TTCAATTTACCTT---------------------------------------------------------------------AGAACAAATAT-----------------------------------------------------------------------------------------------------GGCTAAC-----------------------------------------------------------------------------C-----------CC------------------------------------------------GTCAAATTCATGTGC------------TTCAACTTTCTCCCCGACTAATCTTGTGCATAATAACG-------T-------------TAT---TTCTATAA-----------AAATGCTTTG--G-------TAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................TTATCTGATA-GTCGGGG----AACTCGACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
droYak3
CAATT---TCTTTCGATATGCC-----AGA---------AATATGTTGAATTTTCTTGTTC--------------------------------------------------------------GCACTTTCACC---------------------------AACTGAGTAACGGGTATCTGATA-GTTGTGA----AACGCGACTATAGC-GTTCTTTCGTCTCTTTATT--------------------GTGTTTGCGATAG------------------------------------------------------------------------AACTAATAAAAAATATATAAGGCTTCAAGTCTATTTT-TTC------------------------------------------------------------------------------------------------------------------------------------AA--------------------------T-AGTGAATATTA-------TTTTATAG--------TTACTTGATAGCAT---------------------------------------------------------------------------------------------------------------T-CATTAAAT---ACATATTG-----------AAT------------------TGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................CTGAGTAACGGGTATCTGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100000000
droEug1
GTT-AATATCTATCGATTTACA-----AAAGATTAAATTAAGGTTATAAGGCTCCACATGG--GCAGTGACGTCACTATAAGCATACTCAACATACTTCCTCTGACAATAGGTGGCTCCTTGTGAATTTCCACTAGCAAAATTAATATTTTAAAATTGTGTAAAACAGTAACGGGTATCTTATA-GTCGCGG----CACTCGACTATAGC-GTTTCCTCTTGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAA--------ATGGTTTCCTATATCTTTTT--------------------------------------------------------------------------------------------------------TTC--TCTTTC---ATCCATTT-----------AAAT-----G--T-------AAASizeHit CountTotal NormTotal
No Reads
droBia1
AAT-T---TCC---------------------------------------------CTTTT--------------------------------------------------------------G--CTTCCTTA---------------------------AGCTGAGTAACGGGTATCTAATA-GTCGAGG----CACTCGGCTATAGC-GTTCTACCTTGTTTTTTCA-TATTTTCA--------------------AT--------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------AATGAATAATGAGTACCATTTTAATGAGTTCCTA----AAAGATTAATTAATTTTTTAAATAACT---------------------T-----------CC------------------------------------------------TACAAATTTTTGTAT------------TTTAGTATTTTTTTTTATTCTTT---TAATAATT-----------TCTTTTTCC--A-------------T-A-----------AAACGAAATT--A-------AAASizeHit CountTotal NormTotal
No Reads
droTak1
GATTA---TTAGTCGGGACACC-----AAC---------C--------CGACACAGCGTTC--------------------------------------------------------------GCACTCCCTTT---------------------------AGCTGAGTGACGGGTATTAGATA-GTCGGGACAACAACCCGACTATAGC-GTTCTCTCTTGTTTTAAAT--ACAAAAT-----------GTGAT------------------------------TGTTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAACAA-T-----------------------------------------TAAATAACA--T--AAGATAAATTTGATATGACTAATAATAAATTTATGTTTCGAACATATAAATTTGATATTATATC--ACATTTC---AA-----------ATATATTCAAAT-----A----------------------------------TAT--T-------AAASizeHit CountTotal NormTotal
No Reads
droEle1
TGC-A---TTCGTCAG-------------A---------AATATG--TAAATTTACTATTC--------------------------------------------------------------AAAATTAAACC---------------------------AGAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTTAAGAAAGGTTTAAGAATGAAATGGTTGATTGTATAAAAAGCAATGTTGTTTTCAAACCAAATTTTACTGATATGCCGCATTAAATCACTATTCGTTATTAGTTTGGAAT--GCTAAACCAAAT-ACCACATTTTCAA--------------------------T-CGTTTA--------GATTTTAGAGAA--------TTATCTTG----------------------------------------AAAATTTGTACA-------------------------------TTTTA----------------------------TT-GTTTAAAT---ACA-ATTG-----------GAATTTGTGG--T-------ACCSizeHit CountTotal NormTotal
No Reads
droRho1
TAA-T---TCGAGCGG----CG-----AAA---------AACATA-CAAGAAGGCATATTT----------------------------ATA-------------------------------TTAAGTTGTTT---------------------------AGCTGAGTAACGGGTATCTAATA-GTCGAGG----CACTCGACTATAGC-GTTCTCTCTTGTTTTTACTA--AATTCTTC------AT----------TTTAATGCTAGTAATTTGCAATGATTTGGCTTTGCTTAAAATAACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-AG--------------------AAGTTCGTACAAAT------------------------------------------------AATTCATAAA-------------------------------TCTTA---TA----------------------AT----ATATATAAAAATATAGAAATAATAAACAAAGTATTTGA--C-------AAGSizeHit CountTotal NormTotal
No Reads
droFic1
TTT-A---CTAACTTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAAATAG----------------------------------------------------TGTATGCTTTA---------AATAAATAGTTAATTTATTATTTTTAAAACAGATGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droKik1
AAT-G---A----------------------------------------AACTTTGCATATAGTC----------------------------------------------------------G--TCTATATA---------------------------CTGTCACTGC-------TATATATGTCGGAATTATAACTTGGCTGTT---------------------------------TTTCAATATTATTCCATCATTT----------------------------------------------------TTTAGATATAGCCATTTTATATTATTCCAGAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--T-------ATASizeHit CountTotal NormTotal
No Reads
droAna3
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTATCGGGTATCTTATT-GTGAAAA----AACTCAACTATGGCCACACTTTCTTC-------------------------TTTAATACTAAAAAAA----------------------------------------------------TACTAAAAAATAAG------------------CTTTGTTCTTTATCTTCTAT-TATTCTAT------------------------------------------------------------------------------------------------------------------------------------AA--------------------------C-AGGTTG--------CTTTA---------------------------GT-----------------------------------------------------------------------------------------CTTATATATTTA------TATCTA--AT----------------------------------AA--T-------ATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------GATGAGTACCGGGTATAATATA-GTCGGAA----AACTCGACAATAGCCGTTCTCTCCTTTTTTTTTC-TCCTTTCT--------------------CT--------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------GTGGCTTGCAGCGGGTTATACCAAAT-ACACCCA----AAATGTAGATTAAGTTTGTTGGTGACATAA-T-----------------------------------------CACAAACTT--T--TAAACAA-TTTTTT------------------------------------------------------------TTTACCAATTTCC-------------GTTT--A-------------T-A-----------AAATTAGTTT--G-------AAASizeHit CountTotal NormTotal
No Reads
dp5
CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTACTGGGTATTTAATA-GTCGGAA----AACTCGACTACATC-TCTTTAGTTTGTTGTTGTAG--TTTTCATT------AA----------TGGAACGACAG---------------------------------------------------------------------TGCAACTGAATGGTGAATTATTATACATATATTCTAA------------------------------------------------------------------------------------------------------------------------------------T------------------------------TTCTA--------CACAACATACA----------------------------------------------------------------------------------------------------------TATACACATGTACACATA------TACAC---ATA---------------------------------TA--C-------ACTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................TT------AA----------TGGAACGACAG---------------------------------------------------------------------TGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
AAT-A---CTTTTATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------TTAAAAATAT----------------------------------------------------TC-----------------------------TATTTTTTTTAATGAAATTAAATATTTTTT------------------------------------------------------------------------------------------------------------------------------------AA--------------------------A-ATTTTA--------AATCCTTTAAAA--------ATATTTTCAACGATTTTA---------------------------------------------------------------------------------------------------------AAAT---------------------------------------A--C-------AAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTT-A---TATT-CAATACAAATACCTAGC---------AAAATGATCAAAA-------TC--------------------------------------------------------------GGACTAAAAAT---------------------------AGCCAAGTTATGCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCTTGTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------AAGC------------------------------------------ATGTGAACAGAATT--TTTTA-----------------------AAAATACGTAAA-------------------------------TACAT-----------------------------TTGTTATTAT---AAA-TTTG-----------AAATATTTGTTTTACTGGTCTATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................TCAAAA-------TC--------------------------------------------------------------GGACTAAAAAT---------------------------AGCCAAGTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................TTGTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------AAGC------------------------------------------ATGTGAACAGAATT--TT..............................................................................................................................................................27200.05100010
droVir3
AAT-A---CACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAATATAACGAGCCTTATT--TATATATGTTAATT------------------------------------------------------------------------------------------------------------------------------------TA--------------------------T-TGTTTT--------TTGTTTTTGTAA--------TCTTACATTAATCTTTTG---------------------------------------------------------------------------------------------------------ATTT--ACAGAA---ATTCTACA-----------ACAGGTAG----A-------GTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TTT-A---CTTACTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAAATAT----------------------------------------------------AATTAACAATTTAGCATTGCAATGCATTACATATTT------------------AATATAA------------------------------------------------------------------------------------------------------------------------------------AA--------------------------A-TGATTA--------TACCCTTTGTGA--------GAGTATTTGAAAATTTCT---------------------------------------------------------------------------------------------------------TTTT--ATAAAT-------------------------------------------ATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATT-A---GAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTAATTAATTTGTTTTAATTTAAATATATATTTAGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATATTTATATATTT---------------TTTGTTGTTATTAT---T--------------------------------------------------------------------------------------TTATAAAAATA------CCTTTT--AC----------------------------------AA--G-------ATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:51 AM