ID:

dsi_11561

 Coordinate:

3r:4207960-4208109 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.2

Flybase annnotation

five_prime_UTR [3r_4208034_4208317_+]; exon [3r_4208034_4208507_+]

No Repeatable elements found

Sense Strand Reads

----------------------------------------------------------------------------------------------------------------------------##############################################################################################################################
TTTATTAGATAATAATTGATTTTGATAACAATTCAAATTTAAACACGATATAATTTGTTGTTACGTATCGATTCCGACTATCGATTGCAAGCAGAGTGTAGTACCTGCACTGACCCGTGCTGCGAACGTTGTTCAACTCTAGCCAGCAGTTGTAGTTCGTGTCGGGATTGTTTTTTAGATTAATATTTCTCAACTTTTAGACCATTGATTGCCGAATTGGTCAACTCTTCCAAATTGCAACAAATTCATT
*************************************************************************************************(((((....((((......))))...............)))...)).********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
.................................................................................................GTAGTACCTGCACTGACCC...................................................................................................................................... 19 0 1 3.00 3 0 0 3 0 0 0 0 0 0
............................................................................................................................AACGTTGTTCAACTCTAGCC.......................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................ATTGATTGCCGAATTGGT............................. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................CAGTTGTAGTTCGTGTCGGGAT.................................................................................. 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.....................................................................................................................................................................GATTGTTTTTTAGATTAATAT................................................................ 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0
...................................................................................................................................................AGTTGTAGTTCGTGTCGGG.................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CTTTTAGACCATTGATTGCC..................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................CGGGATTGTTTTTTAGATTAAT.................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GACCATTGATTGCCGAAT................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................AGCAGTTGTAGTTCGTGTCGGGA................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTAGACCATTGATTGCCGAATTGGT............................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................GTTGTAGTTCGTGTCGGGGTT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................GCCAGCAGTTGTAGTTCG........................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................GACCATTGATTGCCGAATTG............................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................GTTGTAGTTCGTGTCGGGA................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................TCGTGTCGGGATTGT............................................................................... 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................CATTGATTGCCGAATTGGTCAACT........................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................AGTTCGTGTCGGGAT.................................................................................. 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................GTAGTACCTGCACTGACCCGTG................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................GTTCGTGTCGGGATTGTTTTTTAGATT..................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................TTTTAGACCATTGATTGCCGAATTG............................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................AGTACCTGCACTGACCCG..................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................CAGCAGTTGTAGTTCGTG......................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................TTCGTGTCGGGATTGTTT............................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................GTAGTTCGTGTCGGGATT................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................GTGCGAACGTTGTTC.................................................................................................................... 15 1 5 0.80 4 0 0 0 0 0 4 0 0 0
........................................................................TCCGACGATCGATTGGAAGC.............................................................................................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0
............................................................................................................................AACGTGGTTGAACTCTAG............................................................................................................ 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................TGCGTGTCGGGATTGCTTTT........................................................................... 20 2 3 0.33 1 0 0 0 0 0 0 1 0 0
...........................................................................GACTATCGGTTTCAAGC.............................................................................................................................................................. 17 2 11 0.27 3 0 0 0 3 0 0 0 0 0
.......................................................................................................................................................GTAGTTCGTGTTGGGATT................................................................................. 18 1 4 0.25 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AGTGATTGCCGCATTGATCAA.......................... 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................TTGTAGTTCGTGACG...................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 0 0 1
...............................................................CGTTTCGATTCCGACTCTGG....................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................AGTGATTGCCGCATTGATCA........................... 20 3 10 0.10 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................GTGCGAACGTTGTTCGA.................................................................................................................. 17 2 12 0.08 1 0 0 0 0 0 1 0 0 0
.......GATAATAGTTGATTTTGTT................................................................................................................................................................................................................................ 19 2 13 0.08 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................TCGTGCGAACGTTGTTC.................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 1 0 0 0
....................................................ATTTGTTGTTGCGTA....................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

AAATAATCTATTATTAACTAAAACTATTGTTAAGTTTAAATTTGTGCTATATTAAACAACAATGCATAGCTAAGGCTGATAGCTAACGTTCGTCTCACATCATGGACGTGACTGGGCACGACGCTTGCAACAAGTTGAGATCGGTCGTCAACATCAAGCACAGCCCTAACAAAAAATCTAATTATAAAGAGTTGAAAATCTGGTAACTAACGGCTTAACCAGTTGAGAAGGTTTAACGTTGTTTAAGTAA
**********************************************************************************************************(((((....((((......))))...............)))...)).************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M023
head
 SRR902009
testis
...........................................................CAATGCATAGCTAAGGCTG............................................................................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGTTGAAAATCTGGT.............................................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................TCGGTCGTCAACATCAAGCA.......................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................TGCGTCTCACCGCATGGACG.............................................................................................................................................. 20 3 4 0.50 2 0 0 0 2 0 0 0 0 0
.....................................................................................................................ACGACGCTTGCAACA...................................................................................................................... 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GGTTTAACGTTGTTT...... 15 0 3 0.33 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................AAGTTGAAAATCTGGT.............................................. 16 1 10 0.30 3 0 3 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AGAAAGTTTAAGGTAGTTTAAGT.. 23 3 4 0.25 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................GAAAGTTTAAGGTAGTTTAAGT.. 22 3 7 0.14 1 0 0 0 0 1 0 0 0 0
...............................................................................................................CTGGGCTCGACCCTTGC.......................................................................................................................... 17 2 7 0.14 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................AAGTTGAGATCCGTC........................................................................................................ 15 1 8 0.13 1 0 0 0 1 0 0 0 0 0
...................................................................AGTTAAGACTGTTAGCTAACG.................................................................................................................................................................. 21 3 9 0.11 1 0 0 0 0 0 0 1 0 0
...................................................................................................TCATCGACGTGGCTGGGCT.................................................................................................................................... 19 3 19 0.11 2 0 0 0 0 0 0 0 2 0
...............................................................................................................................................................ACAGCCCTAGAAAAAAA.......................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 11:04 PM