ID:

dsi_11558

 Coordinate:

3l:2927775-2927924 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.0 -29.8 -29.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCCTGTGCTGCGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGGTGAGTTTTTGGATTATTTACAGCGGCTTGAACTATAAGCCCTTGTAAACTAGAATCAAAAAAGGAAGTGAGAGCTTTAAAAGCAAAAGAAGGAAAACAGCAAGTGCGCGTGTGTGTGTGCGCCTCATTCTGTATACAAACAAATCGTGGCAGCTCAGCTGTAAGAGTAAAACACCTCTCTCCCTCTCTCCACCCAAGCA
**************************************************.....(((((((.((.(((((((.((((((.....)))))).)))))))...)).)))))))..(((((....)))))............................(((((((.((((((((........)))))))).)))...)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
.................TGCCTGGATTTGCCCAAGACGGC.................................................................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.............................................................................TTGAACTATAAGCCCTTGTAAACTAGAA................................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................TAAACTAGAATCAAAAAAGGA...................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................................AAAAAAGGAAGTGAGAGCT............................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................ATTATTTACAGCGGCTTTAAA....................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................AAAAGCAAAAGAAGGAAGAAAG.................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................CAGGTGAGTTTTTGTA........................................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................GCTCAGCTGGAAGAGTA............................... 17 1 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................................................................................AGTGAGAGCTTTAGAA...................................................................................................................... 16 1 4 0.25 1 0 0 0 0 0 1 0 0 0
..............................................................................................................AAAGGGAGTGAGAGGTTT.......................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................GTGGCAGCTCAGCTT....................................... 15 1 15 0.07 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................AGTCAGCTCAGCTGTCAGA.................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
..............................................................................................TTAAACTAGGATCAAAAAAA........................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GGGACACGACGCGGCAGACGGACCTAAACGGGTTCTGCCGGTACATGGTCCACTCAAAAACCTAATAAATGTCGCCGAACTTGATATTCGGGAACATTTGATCTTAGTTTTTTCCTTCACTCTCGAAATTTTCGTTTTCTTCCTTTTGTCGTTCACGCGCACACACACACGCGGAGTAAGACATATGTTTGTTTAGCACCGTCGAGTCGACATTCTCATTTTGTGGAGAGAGGGAGAGAGGTGGGTTCGT
**************************************************.....(((((((.((.(((((((.((((((.....)))))).)))))))...)).)))))))..(((((....)))))............................(((((((.((((((((........)))))))).)))...)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR902009
testis
........................................................................................................................................................................................................................................GGAGCGAGTTGGGTTCGT 18 2 1 19.00 19 19 0 0 0 0 0 0 0
.................ACGGGCCTAAACGGATTC....................................................................................................................................................................................................................... 18 2 5 6.20 31 2 28 0 0 0 1 0 0
.......................................................................................................................................................................................................................................GGGAGCGAGTTGGGTTCGT 19 2 1 6.00 6 6 0 0 0 0 0 0 0
.......................................................................................TCGGGAACATTTGATCTT................................................................................................................................................. 18 0 1 2.00 2 0 0 2 0 0 0 0 0
..........................................................................................................................................................................................GTTTGTTTAGCACCGTCG.............................................. 18 0 1 2.00 2 0 0 0 2 0 0 0 0
.................ACGGGCCTAAACGGATT........................................................................................................................................................................................................................ 17 2 14 1.86 26 3 16 0 0 0 7 0 0
.......................................................................................................................................................................................................................................GGGAGCGAGTTGGGTTCG. 18 2 3 1.67 5 5 0 0 0 0 0 0 0
...................................TGCCGGTACGTGGTCCA...................................................................................................................................................................................................... 17 1 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................CCGGGAACATTTGATCTTAGT.............................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................GTTTTCTTCTTTTGGTCGTACAC.............................................................................................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0
............................................................CCTAATAAATGTCGCCGAACTTGAT..................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0
........................................................................................CGGGAACATTTGATCTTA................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................................GGTTTTCTTCTTTTTGTCGTACAC.............................................................................................. 24 3 3 0.67 2 0 2 0 0 0 0 0 0
.........................................................................................................................................................................................................................................GAGCGAGTTGGGTTCGT 17 2 15 0.53 8 8 0 0 0 0 0 0 0
.........................................................................................................AGTTTGTTCCATCACTCT............................................................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGGAGCGAGTTGGGTTC.. 17 2 17 0.41 7 7 0 0 0 0 0 0 0
.......................CTAAACGGGTTCTGCAGGCTC.............................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 1 0
.......................................................................................................................................................................GACGAGCAGTAAGACATATGT.............................................................. 21 3 3 0.33 1 0 1 0 0 0 0 0 0
...................GGGCCTAAACGGATTCT...................................................................................................................................................................................................................... 17 2 16 0.25 4 2 1 0 0 1 0 0 0
...........................................................................................................................................................................................................................................GAGAGGGGGGTTCGT 15 1 4 0.25 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................GGAGCGAGTTGGGTTCG. 17 2 18 0.22 4 4 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTTGTGGAGAGAGTGAGTTA........... 20 3 9 0.22 2 0 0 0 0 0 0 0 2
........................................................................................................................................................................................................................CAGTTTCTGCAGAGAGGGA............... 19 3 12 0.08 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AGAGGGAGAGCGGGGGGT.... 18 2 12 0.08 1 0 0 0 0 0 0 0 1
...................GGTCCTAAACGGATTCT...................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 1 0 0
..................................CTGCCGGTACGTGGT......................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:2927725-2927974 - dsi_11558 CCCTGTGCTGCGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGGTGAGT------TTTT-GG----------------------------------------------ATT---------------------------------------------ATTTACAGC--------GGCTTGAACTATAA-------GCCCTTGTAAACT--AGAATCAAA--AAAGGAAG-----------T------------------------------GAGAGCT--------------------TTA-A-------AAGCAAAAG-----------------AAGGAA---------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGTGTGCGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTAAG-AGTAAAAC-ACC--T--CTCTCCCT----CTCTC-------------------CAC--CCAAGCA----------
droSec2 scaffold_2:3063455-3063704 - dse_1003 CCCTGTGCTGCGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGGTGAGT------TTTT-GG----------------------------------------------ATT---------------------------------------------ATTTACAGC--------GGCTTGAACTATAA-------GCCCTTGTAAACT--AGAATCAGA--AAAGGAAG-----------T------------------------------GAGAGCT--------------------TTA-A-------AAGCAAAAG-----------------AAGAAT---------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGTGCGCGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTAAG-AGTAAAAC-ACC--T--CTCTCCCT----CTCTC-------------------CAC--CCAAGCA----------
dm3 chr3L:3069961-3070211 - CCCTGTGCTGTGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGGTGAGT------TTTT-GG----------------------------------------------ATT---------------------------------------------ATTTACAGC--------GGCTTGAACTATAA-------GCCCTTGTAAACT--AGAATCAAAA-AAAGGAAG-----------T------------------------------AAGAGCT--------------------TTA-A-------AAGCGAAAG-----------------AAGAAA---------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGTGTGCGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTAAG-AGTAAAAC-ACC--T--CTCTCCCT----CTCTC-------------------CAC--CCTAGCA----------
droEre2 scaffold_4784:3077451-3077703 - CCCTGTGCTGCGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGGTGAGT------TTTT-GG----------------------------------------------GGT---------------------------------------------ATTTACAGC--------GGCTTGATCTCAAA-------GCCCTTGTAAACT--AAAAAAAAAAAGAAGGAAG-----------T------------------------------GATAGCT--------------------TAA-A-------AAGCGAAAA-----------------AGGAAAA--------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGTGTGCGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCACAGCTGTAAG-AGTAAAAC-ACC--T--CTCTCCCT----CTCTC-------------------CAC--CCTAGCA----------
droYak3 3L:8877641-8877893 + CCCTGTGCTGCGCCGTCTGCCTGGACTTGCCCAAGACAGCCATGTACCAGGTGAGT------TTTTTGG----------------------------------------------GGT---------------------------------------------ATTTACAGC--------GGCTTGAACTATAA-------GCCCTTGTAAACT--AGAAAAAAAAAGAAGGAAG-----------T------------------------------GTGAGCT--------------------TAA-A-------AGGCGAAAA-----------------AAGAAA---------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGTGTGCGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTAAG-AGTAAAAC-ACC--T--CTCTCCCT----CTCTC-------------------CAC--CCTAGCA----------
droEug1 scf7180000409466:790121-790358 - CCCTGTGCTGCGCTGTCTGCCTGGACTTACCCAAGACGGCCATGTACCAGGTAAGT------TTTT-GG----------------------------------------------GGT---------------------------------------------TATTTCAGC--------GGATTAAAT--AAA-------ACCCTTGAAATCT--AGATAAAAA----------------------------------AAA--------------------C------------------------------TAAAAAC--------------------------------------------------------------------------------------------------------------------TAAGGAAACA-------CT----------------------------------------------------------AAATAGGTGTG--------TGTATGTGTGTGCACCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAACTCAGCTGTAAG-AGTGAAAC-ACC--T--CTCTCTAT----CT-----------TG-CCCCC---TCC--TCCAGCA----------
droBia1 scf7180000302428:2404857-2405060 - CCCTATGCTGTGCCGTTTGCCTGGATTTGCCCAAGACGGCCATGTACCAGGTGAGT------TTTT-GG----------------------------------------------GGT---------------------------------------------TTTAATGG-----------A---------------------------------AGGAACAAA--AAAATAAA-----------T------------------------------AT-----------------------------------GAAA-----AT-----------------TAGGAA---------------------AACAGA------------------------------------------------------------------------------------------------------------------------------------------GAGTGTGCGCG--------CGTGTGTGTGTGTGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTAAG-AGTGGAAC-CCC--T--CT----------------------------------TAC--CCCACCA----------
droTak1 scf7180000415378:361822-362007 + CCCTGTGCTGCGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGGTGAGT------TTTT-GG----------------------------------------------GGT---------------------------------------------TTTATTAA-----AGGCGAATTAA--------------------------------------------------------------------AG-AAAAT--------------------------------------------------C-------------------------------------------------------TTAAAA-------------------------------------------------------------AAAAG----------------------------------------------------------------------------------G--------AATATGTGTGTGTGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTAAG-AGTGAAAC-ACC--T--CTCTCCC-----------------------------------CCACCA----------
droEle1 scf7180000491249:2237864-2238102 + CCCTGTGTTGTGCCGTTTGCCTGGATCTGCCCAAGACGGCCATGTACCAGGTGAGT------TGT--GG----------------------------------------------GGT---------------------------------------------TGTTGCAGC--------GA-----AAAATAA-------GCCTTTAAAAAAC--CGTT---------------------------TTAA----A-AAGAA-AAA-----------GATAACT--------------------TAA-AATAT-----------------------------------------------------------------------------------------------------------------------ATGA-AAA----------------------------------------------------------------------------T----GCC----------TGTGTGTGTGTGCGTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTA-G-AGTAAAAT-ACA--C--CTCTCCCT----CTCTC-----TCTGGGCCCCCT--CAC--CCGCCCA----------
droRho1 scf7180000777063:196673-196899 + CCCTGTGCTGCGCCGTGTGCCTGGATCTGCCCAAGACGGCCATGTACCAGGTGAGT------TGT--GG----------------------------------------------GGT---------------------------------------------TATTACAGC--------GAA---A--AAAAA-------ACCTTCGCG---------------------------------------TTCGAAA-AAAAA-CAA-----------GTAAACT--------------------TAA--ATAT-----------------------------------------------------------------------------------------------------------------------AGGA-AAA----------------------------------------------------------------------------------TG----------CATGTGTGTGTGCGTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTGAG-AGTGAAAT-ACT--C--CTCTCCCT----CTCTC-------TTG-CCCCCTC-CTC--C--CACG----------
droFic1 scf7180000454105:1380290-1380510 - CCCTGTGCTGCGCCGTCTGCCTGGATTTGCCCAAAACAGCCATGTACCAGGTGAGT------TGT--GG----------------------------------------------GGT---------------------------------------------AATTGCAGC--------GGA------------------ACCTTTGAAATAT--CGAA---------------------------ATAC----AC-AAAAAATA-----------GCTAACA-------------------------------------------------------------------------------------------------------------------------------AAAAGAA-------------AAGGG-------------------------------------------------------------------------------GC----GAG----------CGTGTGTGTGTGGGCCAT---TCTGTATACA-AACAATTCGTG-------------GCAGCTCAGCTGTAAG-AGTGAATT-GCC--T--CTCTCTCG----CCCCC-------------------ACC--ACACATA----------
droKik1 scf7180000302577:1233439-1233679 - CCCTTTGCTGCGCCGTCTGCCTGGATCTGCCCAAGACGGCCATGTACCAGGTGAGT------TCTT-GCAGGGAGCGAACTGCGTAGTCGACGTGTCCTGGGCCCGTGC---------------------------------------------------------------------------------CTCCCCCTCTTCGAT-A-AAAACCCCCC-----------------------------CTGA----AA-ACGAA--------------------------------------------------A-------------------------------------------------------CGAAAT-------------------------------------------------------------GAAATGC-------------------------------------------------------------------------------------------------------CTTTCT---TCTGTATACA-AACAAATCGTG-------------ACAGCTCAGCTGTAACCAGTGAATC-CACCACCACTCCTCCC----C---CATGCCTGTG----------GCC--CC-CATT----------
droAna3 scaffold_13337:9049312-9049425 + GTATGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------AGTGTGTGTGTGTGACGTTC---TCTGTATACA-AACAAATAGAG-------------CCAGCTCAGCTGTAAG-AGTGAAACCGCA--CCACTCCCC-T----GCGTC-------TCG-GCCCCTACCCC--CCAAACT----------
droBip1 scf7180000395622:9339-9706 - CCCTGTGCTGCGCCGTTTGCCTGGATCTGCCTAAAACGGCCATGTACCAGGTGAGT------TTGC-TG----------------------------------------------GTT---------------------------------------------AATTCCAGA--------AGGGGGGGGTAGAA-------GAACTC----------TCGCG---------------------------TAGGCGT--AGAA-CAGTGAAATTTTAGGCT-----------CAACTATGGA--------ATAT-GGAA-----TATGGGGCTAATCCCTACAACGAAGTAAC---CCCCTGTCTTGCCA-CCA------------CCACCCACCCCTCTTCGTTTTTAACAAAAAGAG-------------AA------------------TCATAGATGT------------GGGAGTGTA------------------------ATTGTACAAGT----GGG--------GGTGTGTGTGTGTGGGACGT-TCTCTGTATACA-AACAAATAGAG-------------CCAGCTCAGCTGTAAG-AGTGAAACCGCA--CCACTCCCCCG-----CGTC-------TCG-GCCCCTCGCACCCCCAACCG----------
dp5 XR_group8:3932666-3932916 - CCCTCTGCTGTGCCGTTTGCCTGGATTTGCCCAAAACGGCCATGTACCAGGTGAGT---------------------------------------------------------------------------------------------------------------GCAGCGTGGA---GGCCCGAATTCTTTTCTTTTTCCCC-C-AAAATTTTAG-----------------------------CTAC----AG-AAAAA--------------------------------------------------C-------------------------------------------------------TACAAC-------------------------------------------------------------AAAGGGCCTGTTTTTTTCTATCTGT------------GTGCGT--------------------------GTGTGTGC----------GAGAGCTAT--AGTGTGTGTGTGTACCAT---TCTGTATACA-AACAAATCG--------------------CCAGCTGTAAG-AGGAAACC-CAC--C--CACTCCCT----CCGTC-------------------GCC--CCCAGAA----------
droPer2 scaffold_29:163685-163935 - CCCTCTGCTGTGCCGTTTGCCTGGATTTGCCCAAAACGGCCATGTACCAGGTGAGT---------------------------------------------------------------------------------------------------------------GCAGCGTGGA---GGCCCGAATTCTTTTCTTTTTCCCC-C-AAAATTTTAG-----------------------------CTAC----AG-AAAAA--------------------------------------------------C-------------------------------------------------------TACAAC-------------------------------------------------------------AAAGGGCCTGTTTT-TTCTATCTGT------------GTGCGT--------------------------GTGTGTGC----------GAGAGCTAT--AGTGTGTGTGTGTACCAT---TCTGTATACA-AACAAATCG--------------------CCAGCTGTAAG-AGGAAACC-CAC--C--CACTCCCT----CCGTC-------G-----------CGC--CCCAGAA----------
droWil2 scf2_1100000004830:135676-135969 - CATTATGCTGTGCCGTATGCTTGGATCTGCCAAAAACGGCGATGTACCAGGTGAGTGATAGTTTCT-GG----------------------------------------------GATCTCTTGAATGTTCCACCTCCTTTCCCTACAGACAATGTTTAGCGCAGTTGCAGC--------AGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGCAGGCACTGGGCCATCCACCAGT---------------------------------------------TATGTTTTTATCT--------------------------------ACATTA----GAGT----ATGTT------T----ACG--------AGTGTGTGTGTGTGTATGTG---TGTGTATACA-AACAAATCGAG-------------CTATGTCAGCTGTAAG-CAAGAAAC-AGC--T--ATTTCCATACGCCTCCC-------------------CCG--CCGAGTAGACAAATCGT
droVir3 scaffold_13049:15195915-15196180 + dvi_20038 CGCTTTGCTGTGCCGTGTGCTTGGATTTGCCAAAAACGGCCATGTATCAGGTGAGA------CAATTGA----------------------TGCA-ACTAGGCACATGAGTTTTGATT---------------------------------------------AATTT------------------------------------------------AA-----AA--AAAAAAAATACGAAAAAAGT------------------------------AAT-----------------------------ATAT---ATGTG-----------------CACAAAGAGGCAAATGC--------------AATAGCAAGC----------------------------------------------------------------------------ATTTGT------------GTG--TGTATG--TACATAC----GTGCTCTT---------TGT----GCG--------TGTGTGTGTATTTGTGACATTTCTCTGTATACAAAACAAATCGAGCAA-AAGCAATCGCAAACTCAGCTGTAAG----------------------------------------------------------------------------
droMoj3 scaffold_6680:21679071-21679340 - CACTGTGCTGTGCCGTGTGTCTGGATTTGCCCAAAACGGCCATGTATCAGGTGAGT------TGACTGT---------------------------------------------------------------------------------------------------------------GGCATGA----------------------AAACT--CAAAAAAAAAAAAAATTAA-----------T-------------------------------TTAATT--------------------TATAAATAT-------GTACA-----------------AAAAAAA--------------------GAC--C------------------------------------------AACGTATGTGCATT-----GAAATGC------------A----TATGTGCATTTGCGAG--TAAATGCATACATACAGCAGTGTTCTC---------TAT----GCG--------TATGCGTGTATTTGTGACATTTCTCTGTATACAAAACAAATCGAGCAA-AAGCAATCGAAAACTCAGCTGTAAG----------------------------------------------------------------------------
droGri2 scaffold_15110:19599137-19599385 + CACTCTGCTGTGCCGTCTGCTTGGATCTGCCCAAAACGGCCATGTATCAGGTGAGT------TGATTGC----------------------------------------------------------------------------------------------------TGCATGCA---GAAC---------------------------------------------------TACCAAAAAAAT----CAAAT-AAAAA-AAT-----------GTTAATTATATGCGTA--TATATAATATATAAATAT-------------GTGTG-------CACAAGGAAGTAAA--------------------TG--------------------------------------------------------------------------------------TATGTGCGTCTG----C------------------------------------GTGT----GTG--------TGTGTGTGGGTGCGTGACATATCTCTGTACACAAAACAAATCGAGCAAAAAGCAAACGAAAACTCAGCTGTAAG----------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCCTGTGCTGCGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGGTGAGT------TTTT-GG----------------------------------------------ATT---------------------------------------------ATTTACAGC--------GGCTTGAACTATAA-------GCCCTTGTAAACT--AGAATCAAA--AAAGGAAG-----------T------------------------------GAGAGCT--------------------TTA-A-------AAGCAAAAG-----------------AAGGAA---------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGTGTGCGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTAAG-AGTAAAAC-ACC--T--CTCTCCCT----CTCTC-------------------CAC--CCAAGCA----------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................TGCCTGGATTTGCCCAAGACGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000000002000000
.......................................................................................................................................................................................TTGAACTATAA-------GCCCTTGTAAACT--AGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
................................................................................................................................................................................................................TAAACT--AGAATCAAA--AAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
..............................................................................................................................................................................................................................AAA--AAAGGAAG-----------T------------------------------GAGAGCT--------------------..........................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG-------------GCAGCTCAGCTT................................................................................15150.07100000000010000000
droSec2
CCCTGTGCTGCGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGGTGAGT------TTTT-GG----------------------------------------------ATT---------------------------------------------ATTTACAGC--------GGCTTGAACTATAA-------GCCCTTGTAAACT--AGAATCAGA--AAAGGAAG-----------T------------------------------GAGAGCT--------------------TTA-A-------AAGCAAAAG-----------------AAGAAT---------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGTGCGCGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTAAG-AGTAAAAC-ACC--T--CTCTCCCT----CTCTC-------------------CAC--CCAAGCA----------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................GCCATGTACCAGGTGAGT------TTTT-GG----------------------------------------------AT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
dm3
CCCTGTGCTGTGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGGTGAGT------TTTT-GG----------------------------------------------ATT---------------------------------------------ATTTACAGC--------GGCTTGAACTATAA-------GCCCTTGTAAACT--AGAATCAAAA-AAAGGAAG-----------T------------------------------AAGAGCT--------------------TTA-A-------AAGCGAAAG-----------------AAGAAA---------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGTGTGCGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTAAG-AGTAAAAC-ACC--T--CTCTCCCT----CTCTC-------------------CAC--CCTAGCA----------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................AAAA-AAAGGAAG-----------T------------------------------AAGAGCT--------------------TT........................................................................................................................................................................................................................................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGTAAG-AGTAAAAC-ACC--.............................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GGATTTGCCCAAGACGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TTT-GG----------------------------------------------ATT---------------------------------------------ATTTACAGC--------GGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................TT-GG----------------------------------------------ATT---------------------------------------------ATTTACAGC--------GGCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................CATGTACCAGGTGAGT------TTTT-G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................ATT---------------------------------------------ATTTACAGC--------GGCTTGAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTA-A-------AAGCGAAAG-----------------AAGAAA---------------------AA.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...........................................GTACCAGGTGAGT------TTTT-GG----------------------------------------------AT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...TGTGCTGTGCCGTCTGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GTCTGCCTGGATTTGCCCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GAAG-----------T------------------------------AAGAGCT--------------------TTA-A-------AAGCGA........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................T-GG----------------------------------------------ATT---------------------------------------------ATTTACAGC--------GGCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGTG............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................G-----------------AAGAAA---------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------C.....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................GGCTTGAACTATAA-------GCCCTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGT.............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........TGTGCCGTCTGCCTGGATTTGCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGGATTTGCCCAAGACGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CTGGATTTGCCCAAGACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................CCCAAGACGGCCATGTACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTCAGCTGTAAG-AGTAAAAC-ACC--T--..........................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AGAAA---------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CG....................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................ACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGT.............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CTGCCTGGATTTGCCCAAGACGGCCATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................TGTACCAGGTGAGT------TTTT-GG----------------------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....GTGCTGTGCCGTCTGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CCCTGTGCTGTGCCGTCTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.................TGCCTGGATTTGCCCAAGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGTGT...........................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................CTATAA-------GCCCTTGTAAACT--A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GTCTGCCTGGATTTGCCCAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CGTCTGCCTGGATTTGCCCAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-AACAAATCGTG-------------GCAGCT......................................................................................2011.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGT----GCG--------CGTGTGTGTGTGCG........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGGTGAGT------TTTT-GG----------------------------------------------ATT---------------------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GCCATGTACCAGGTGAGT------TT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................GAGT------TTTT-GG----------------------------------------------ATT---------------------------------------------ATTTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................CATGTACCAGGTGAGT------TTTT-GG----------------------------------------------AT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTG-------------GCAGCTCAGCTGTAAG-AGTAAAAC-..................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CAAGACGGCCATGTACCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGT.................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................AA-------GCCCTTGTAAACT--AGAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TGAACTATAA-------GCCCTTGTAAACT--AGAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGCGCCTCAT---TCTG...........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................A---------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGTGTGC.........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................TGTAAACT--AGAATCAAAA-AAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................ATT---------------------------------------------ATTTACAGC--------GGCTTGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GAAG-----------T------------------------------AAGAGCT--------------------TTA-A-------AAGC..........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CTGTGCTGTGCCGTCTGCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................................................................................................................................AG-----------------AAGAAA---------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CG....................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................GGCCATGTACCAGGTGAGT------TT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AG-----------------AAGAAA---------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
CCCTGTGCTGTGCCGTCTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................ATGTACCAGGTGAGT------TTTT-GG----------------------------------------------AT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTG..............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.CCTGTGCTGTGCCGTCTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA-AACAAATCGTG-------------GCAGCT......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
....GTGCTGTGCCGTCTGCCTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..............GTCTGCCTGGATTTGCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................AGGAAG-----------T------------------------------AAGAGCT--------------------TTA-A-------AAG...........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTG..................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................AGAGCT--------------------TTA-A-------AAGCGAAAG-----------------A...................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TGTGCCGTCTGCCTGGATTTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................CCAAGACGGCCATGTACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTGTGTGTGCGCCTCAT---A..............................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGT----GCG--------CGTGTGTGTGT...........................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGT----GCG--------CGTGTGTGTGTG..........................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................AGCGAAAG-----------------AAGAAA---------------------AACG.....................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT----GCG--------CGTGTGTGTGTG..........................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
droEre2
CCCTGTGCTGCGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGGTGAGT------TTTT-GG----------------------------------------------GGT---------------------------------------------ATTTACAGC--------GGCTTGATCTCAAA-------GCCCTTGTAAACT--AAAAAAAAAAAGAAGGAAG-----------T------------------------------GATAGCT--------------------TAA-A-------AAGCGAAAA-----------------AGGAAAA--------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGTGTGCGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCACAGCTGTAAG-AGTAAAAC-ACC--T--CTCTCCCT----CTCTC-------------------CAC--CCTAGCA----------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....GTGCTGCGCCGTCTGCCTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..........CGCCGTCTGCCTGGATTTGCCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
droYak3
CCCTGTGCTGCGCCGTCTGCCTGGACTTGCCCAAGACAGCCATGTACCAGGTGAGT------TTTTTGG----------------------------------------------GGT---------------------------------------------ATTTACAGC--------GGCTTGAACTATAA-------GCCCTTGTAAACT--AGAAAAAAAAAGAAGGAAG-----------T------------------------------GTGAGCT--------------------TAA-A-------AGGCGAAAA-----------------AAGAAA---------------------AACAGC------------------------------------------------------------------------------------------------------------------------------------------AAGT----GCG--------CGTGTGTGTGTGCGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTAAG-AGTAAAAC-ACC--T--CTCTCCCT----CTCTC-------------------CAC--CCTAGCA----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........GCCGTCTGCCTGGACTTGCCCAAGACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2924.50900000000009
..............GTCTGCCTGGACTTGCCCAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50101000000000
droEug1
CCCTGTGCTGCGCTGTCTGCCTGGACTTACCCAAGACGGCCATGTACCAGGTAAGT------TTTT-GG----------------------------------------------GGT---------------------------------------------TATTTCAGC--------GGATTAAAT--AAA-------ACCCTTGAAATCT--AGATAAAAA----------------------------------AAA--------------------C------------------------------TAAAAAC--------------------------------------------------------------------------------------------------------------------TAAGGAAACA-------CT----------------------------------------------------------AAATAGGTGTG--------TGTATGTGTGTGCACCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAACTCAGCTGTAAG-AGTGAAAC-ACC--T--CTCTCTAT----CT-----------TG-CCCCC---TCC--TCCAGCA----------SizeHit CountTotal NormTotal
No Reads
droBia1
CCCTATGCTGTGCCGTTTGCCTGGATTTGCCCAAGACGGCCATGTACCAGGTGAGT------TTTT-GG----------------------------------------------GGT---------------------------------------------TTTAATGG-----------A---------------------------------AGGAACAAA--AAAATAAA-----------T------------------------------AT-----------------------------------GAAA-----AT-----------------TAGGAA---------------------AACAGA------------------------------------------------------------------------------------------------------------------------------------------GAGTGTGCGCG--------CGTGTGTGTGTGTGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTAAG-AGTGGAAC-CCC--T--CT----------------------------------TAC--CCCACCA----------SizeHit CountTotal NormTotal
No Reads
droTak1
CCCTGTGCTGCGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGGTGAGT------TTTT-GG----------------------------------------------GGT---------------------------------------------TTTATTAA-----AGGCGAATTAA--------------------------------------------------------------------AG-AAAAT--------------------------------------------------C-------------------------------------------------------TTAAAA-------------------------------------------------------------AAAAG----------------------------------------------------------------------------------G--------AATATGTGTGTGTGCCTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTAAG-AGTGAAAC-ACC--T--CTCTCCC-----------------------------------CCACCA----------SizeHit CountTotal NormTotal
No Reads
droEle1
CCCTGTGTTGTGCCGTTTGCCTGGATCTGCCCAAGACGGCCATGTACCAGGTGAGT------TGT--GG----------------------------------------------GGT---------------------------------------------TGTTGCAGC--------GA-----AAAATAA-------GCCTTTAAAAAAC--CGTT---------------------------TTAA----A-AAGAA-AAA-----------GATAACT--------------------TAA-AATAT-----------------------------------------------------------------------------------------------------------------------ATGA-AAA----------------------------------------------------------------------------T----GCC----------TGTGTGTGTGTGCGTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTA-G-AGTAAAAT-ACA--C--CTCTCCCT----CTCTC-----TCTGGGCCCCCT--CAC--CCGCCCA----------SizeHit CountTotal NormTotal
No Reads
droRho1
CCCTGTGCTGCGCCGTGTGCCTGGATCTGCCCAAGACGGCCATGTACCAGGTGAGT------TGT--GG----------------------------------------------GGT---------------------------------------------TATTACAGC--------GAA---A--AAAAA-------ACCTTCGCG---------------------------------------TTCGAAA-AAAAA-CAA-----------GTAAACT--------------------TAA--ATAT-----------------------------------------------------------------------------------------------------------------------AGGA-AAA----------------------------------------------------------------------------------TG----------CATGTGTGTGTGCGTCAT---TCTGTATACA-AACAAATCGTG-------------GCAGCTCAGCTGTGAG-AGTGAAAT-ACT--C--CTCTCCCT----CTCTC-------TTG-CCCCCTC-CTC--C--CACG----------SizeHit CountTotal NormTotal
No Reads
droFic1
CCCTGTGCTGCGCCGTCTGCCTGGATTTGCCCAAAACAGCCATGTACCAGGTGAGT------TGT--GG----------------------------------------------GGT---------------------------------------------AATTGCAGC--------GGA------------------ACCTTTGAAATAT--CGAA---------------------------ATAC----AC-AAAAAATA-----------GCTAACA-------------------------------------------------------------------------------------------------------------------------------AAAAGAA-------------AAGGG-------------------------------------------------------------------------------GC----GAG----------CGTGTGTGTGTGGGCCAT---TCTGTATACA-AACAATTCGTG-------------GCAGCTCAGCTGTAAG-AGTGAATT-GCC--T--CTCTCTCG----CCCCC-------------------ACC--ACACATA----------SizeHit CountTotal NormTotal
No Reads
droKik1
CCCTTTGCTGCGCCGTCTGCCTGGATCTGCCCAAGACGGCCATGTACCAGGTGAGT------TCTT-GCAGGGAGCGAACTGCGTAGTCGACGTGTCCTGGGCCCGTGC---------------------------------------------------------------------------------CTCCCCCTCTTCGAT-A-AAAACCCCCC-----------------------------CTGA----AA-ACGAA--------------------------------------------------A-------------------------------------------------------CGAAAT-------------------------------------------------------------GAAATGC-------------------------------------------------------------------------------------------------------CTTTCT---TCTGTATACA-AACAAATCGTG-------------ACAGCTCAGCTGTAACCAGTGAATC-CACCACCACTCCTCCC----C---CATGCCTGTG----------GCC--CC-CATT----------SizeHit CountTotal NormTotal
No Reads
droAna3
GTATGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------AGTGTGTGTGTGTGACGTTC---TCTGTATACA-AACAAATAGAG-------------CCAGCTCAGCTGTAAG-AGTGAAACCGCA--CCACTCCCC-T----GCGTC-------TCG-GCCCCTACCCC--CCAAACT----------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...TGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------AGTGTGTGTGTGTG........................................................................................................................................20200.051100000
droBip1
CCCTGTGCTGCGCCGTTTGCCTGGATCTGCCTAAAACGGCCATGTACCAGGTGAGT------TTGC-TG----------------------------------------------GTT---------------------------------------------AATTCCAGA--------AGGGGGGGGTAGAA-------GAACTC----------TCGCG---------------------------TAGGCGT--AGAA-CAGTGAAATTTTAGGCT-----------CAACTATGGA--------ATAT-GGAA-----TATGGGGCTAATCCCTACAACGAAGTAAC---CCCCTGTCTTGCCA-CCA------------CCACCCACCCCTCTTCGTTTTTAACAAAAAGAG-------------AA------------------TCATAGATGT------------GGGAGTGTA------------------------ATTGTACAAGT----GGG--------GGTGTGTGTGTGTGGGACGT-TCTCTGTATACA-AACAAATAGAG-------------CCAGCTCAGCTGTAAG-AGTGAAACCGCA--CCACTCCCCCG-----CGTC-------TCG-GCCCCTCGCACCCCCAACCG----------SizeHit CountTotal NormTotal
No Reads
dp5
CCCTCTGCTGTGCCGTTTGCCTGGATTTGCCCAAAACGGCCATGTACCAGGTGAGT---------------------------------------------------------------------------------------------------------------GCAGCGTGGA---GGCCCGAATTCTTTTCTTTTTCCCC-C-AAAATTTTAG-----------------------------CTAC----AG-AAAAA--------------------------------------------------C-------------------------------------------------------TACAAC-------------------------------------------------------------AAAGGGCCTGTTTTTTTCTATCTGT------------GTGCGT--------------------------GTGTGTGC----------GAGAGCTAT--AGTGTGTGTGTGTACCAT---TCTGTATACA-AACAAATCG--------------------CCAGCTGTAAG-AGGAAACC-CAC--C--CACTCCCT----CCGTC-------------------GCC--CCCAGAA----------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA-AACAAATCG--------------------CCAGCTGTAAG-AGG........................................................................2712.0020000000200
........TGTGCCGTTTGCCTGGATTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG--------------------CCAGCTGTAAG-AGGAAACC-..................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCG--------------------CCAGCTGTAAG-AGGAAACC-C.................................................................2511.0010001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------------CCAGCTGTAAG-AGGAAACC-..................................................................2011.0010100000000
.........GTGCCGTTTGCCTGGATTTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT------------GTGCGT--------------------------GTGTGTGC----------GAG............................................................................................................................................................2040.2510000000010
droPer2
CCCTCTGCTGTGCCGTTTGCCTGGATTTGCCCAAAACGGCCATGTACCAGGTGAGT---------------------------------------------------------------------------------------------------------------GCAGCGTGGA---GGCCCGAATTCTTTTCTTTTTCCCC-C-AAAATTTTAG-----------------------------CTAC----AG-AAAAA--------------------------------------------------C-------------------------------------------------------TACAAC-------------------------------------------------------------AAAGGGCCTGTTTT-TTCTATCTGT------------GTGCGT--------------------------GTGTGTGC----------GAGAGCTAT--AGTGTGTGTGTGTACCAT---TCTGTATACA-AACAAATCG--------------------CCAGCTGTAAG-AGGAAACC-CAC--C--CACTCCCT----CCGTC-------G-----------CGC--CCCAGAA----------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................TTGCCTGGATTTGCCCAAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTCTATCTGT------------GTGCGT--------------------------GTGT.............................................................................................................................................................................2111.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGT------------GTGCGT--------------------------GTGTGTGC----------GAGAGCT........................................................................................................................................................2511.001000001
..........TGCCGTTTGCCTGGATTTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droWil2
CATTATGCTGTGCCGTATGCTTGGATCTGCCAAAAACGGCGATGTACCAGGTGAGTGATAGTTTCT-GG----------------------------------------------GATCTCTTGAATGTTCCACCTCCTTTCCCTACAGACAATGTTTAGCGCAGTTGCAGC--------AGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGCAGGCACTGGGCCATCCACCAGT---------------------------------------------TATGTTTTTATCT--------------------------------ACATTA----GAGT----ATGTT------T----ACG--------AGTGTGTGTGTGTGTATGTG---TGTGTATACA-AACAAATCGAG-------------CTATGTCAGCTGTAAG-CAAGAAAC-AGC--T--ATTTCCATACGCCTCCC-------------------CCG--CCGAGTAGACAAATCGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................GATGTACCAGGTGAGTGATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.....................................................................................................................................................ACAATGTTTAGCGCAGTTGCAGC--------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.....TGCTGTGCCGTATGCTTGGATCTGCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCCTCCC-------------------CCG--CCGAG............1911.00101000
.........GTGCCGTATGCTTGGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
....ATGCTGTGCCGTATGCTTGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
..................GCTTGGATCTGCCAAAAACGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.......................................................................................................................................................AATGTTTAGCGCAGTTGCAGC--------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
droVir3
CGCTTTGCTGTGCCGTGTGCTTGGATTTGCCAAAAACGGCCATGTATCAGGTGAGA------CAATTGA----------------------TGCA-ACTAGGCACATGAGTTTTGATT---------------------------------------------AATTT------------------------------------------------AA-----AA--AAAAAAAATACGAAAAAAGT------------------------------AAT-----------------------------ATAT---ATGTG-----------------CACAAAGAGGCAAATGC--------------AATAGCAAGC----------------------------------------------------------------------------ATTTGT------------GTG--TGTATG--TACATAC----GTGCTCTT---------TGT----GCG--------TGTGTGTGTATTTGTGACATTTCTCTGTATACAAAACAAATCGAGCAA-AAGCAATCGCAAACTCAGCTGTAAG----------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTCTGTATACAAAACAAATCGAGC........................................................................................................2711.001000000000000000100000000000000000000000000000000000000000000000
..................GCTTGGATTTGCCAAAAACGGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................ATT---------------------------------------------AATTT------------------------------------------------AA-----AA--AAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.051000000000000000000000000000000000000000000000000000000000000001
droMoj3
CACTGTGCTGTGCCGTGTGTCTGGATTTGCCCAAAACGGCCATGTATCAGGTGAGT------TGACTGT---------------------------------------------------------------------------------------------------------------GGCATGA----------------------AAACT--CAAAAAAAAAAAAAATTAA-----------T-------------------------------TTAATT--------------------TATAAATAT-------GTACA-----------------AAAAAAA--------------------GAC--C------------------------------------------AACGTATGTGCATT-----GAAATGC------------A----TATGTGCATTTGCGAG--TAAATGCATACATACAGCAGTGTTCTC---------TAT----GCG--------TATGCGTGTATTTGTGACATTTCTCTGTATACAAAACAAATCGAGCAA-AAGCAATCGAAAACTCAGCTGTAAG----------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATT-----GAAATGC------------A----TATGTGCA......................................................................................................................................................................................................................2111.001100000
.......CTGTGCCGTGTGTCTGGATTTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droGri2
CACTCTGCTGTGCCGTCTGCTTGGATCTGCCCAAAACGGCCATGTATCAGGTGAGT------TGATTGC----------------------------------------------------------------------------------------------------TGCATGCA---GAAC---------------------------------------------------TACCAAAAAAAT----CAAAT-AAAAA-AAT-----------GTTAATTATATGCGTA--TATATAATATATAAATAT-------------GTGTG-------CACAAGGAAGTAAA--------------------TG--------------------------------------------------------------------------------------TATGTGCGTCTG----C------------------------------------GTGT----GTG--------TGTGTGTGGGTGCGTGACATATCTCTGTACACAAAACAAATCGAGCAAAAAGCAAACGAAAACTCAGCTGTAAG----------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........GTGCCGTCTGCTTGGATCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101

Generated: 05/18/2015 at 02:29 PM