ID:

dsi_11547

 Coordinate:

2r:5378798-5378947 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-20.9 -20.9 -20.1 -20.1

Flybase annnotation

Antisense to CDS [2r_5378437_5378771_-]; exon [2r_5378948_5379422_+]; CDS [2r_5378948_5379422_+]; Antisense to five_prime_UTR [2r_5378772_5378892_-]; Antisense to exon [2r_5378437_5378892_-]; intron [2r_5378076_5378947_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAATTCCTCAAGGATTTCAGCCATTTCGAATGGTGTATGAACTAAAAAATCACCCTAAACAATTTGGAAAGAGTTTTTTTGTGTTTACCGAAAGTATACGCTTTAAATTCAGCACTGAAATGTTGACAGCATATGTGTAGCGTGCTATGAGCAAAGAATTTGTTAAATATTACTAATTTACTTTATATTGTATCCCACAGAGCACGTTCCACCCAAGGGCGATGACATTGCCATTATCATGTACACTTCC
**************************************************....((...((((.((((..(((((.....(((((((.(((((((((((((.......((((((......))))))........)))))...))))............)))).)))))))....)))))..)))).))))........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 O001
Testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
...............................................AATAAGCCTGAACAATTTGGA...................................................................................................................................................................................... 21 3 5 5.40 27 0 10 9 8 0 0 0
.........................................................................................................................................................................................................GCACGTTCCACCCAAGGGC.............................. 19 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................TGTAGCGTGCTATGAGCAA................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................TCCACCCAAGGGCGATGAC........................ 19 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................ACGTTCCACCCAAGGGCG............................. 18 0 1 1.00 1 1 0 0 0 0 0 0
................................................ATAAGCCTGAACAATTTGGA...................................................................................................................................................................................... 20 3 19 0.37 7 0 4 1 2 0 0 0
...............................................AATAAGCCTGAACAATTTGGAA..................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 1 0
........................................................GAACACTTTGGAAAGAGT................................................................................................................................................................................ 18 2 8 0.13 1 0 0 0 0 0 0 1
...............................................AATGAGCCTGAACAATTTGG....................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 1 0

Anti-sense strand reads

#################################################################################################################################################---------------------------------------------------------------------------------------------------------
CTTAAGGAGTTCCTAAAGTCGGTAAAGCTTACCACATACTTGATTTTTTAGTGGGATTTGTTAAACCTTTCTCAAAAAAACACAAATGGCTTTCATATGCGAAATTTAAGTCGTGACTTTACAACTGTCGTATACACATCGCACGATACTCGTTTCTTAAACAATTTATAATGATTAAATGAAATATAACATAGGGTGTCTCGTGCAAGGTGGGTTCCCGCTACTGTAACGGTAATAGTACATGTGAAGG
**************************************************....((...((((.((((..(((((.....(((((((.(((((((((((((.......((((((......))))))........)))))...))))............)))).)))))))....)))))..)))).))))........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M023
head
 GSM343915
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
...............................................TTATTCGGACTTGTTAAACCT...................................................................................................................................................................................... 21 3 5 3.00 15 1 13 0 0 1 0 0 0 0 0
............................................................................................................ACTCGTGAGTTTACAATTGTCGT....................................................................................................................... 23 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TCGCGCAAGGTGCCTTCCCG.............................. 20 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AAAGTTGGTTCGCGCTACTGT....................... 21 3 3 0.67 2 0 0 0 2 0 0 0 0 0 0
...............................................................................................................................................................................................TAGGGTGTCTCGTTCGAGG........................................ 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AAGGTTGGTTCGCGCTACT......................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTTGGTTCGCGCTACTG........................ 17 2 9 0.44 4 3 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................GGTTGGTTCGCGCTACTG........................ 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................AGGGTGTCTCGTTCGAGG........................................ 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TTCCCCCTACTGTCACGGCAA............... 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................AGGGTGTCTCGTTCGA.......................................... 16 2 20 0.20 4 4 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTTGGTTCGCGCTACTGG....................... 18 3 20 0.20 4 0 1 0 0 2 0 1 0 0 0
...................................................TCGGACTTGTTAAACCTATCT.................................................................................................................................................................................. 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TAGGGTGTCTCGTTCGAGGC....................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0
...AAGGAATTTCTACAGTCGGTA.................................................................................................................................................................................................................................. 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................TCGCGCAAGGTGCCTTCCC............................... 19 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTTGGTTCTCGCTACTGT....................... 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AGGGTGTCTCGTTCGAGGC....................................... 19 3 18 0.11 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AGGGTGTCTCGTTCGAG......................................... 17 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0
...........CCAAAAGTCGCTAAAGCTT............................................................................................................................................................................................................................ 19 2 10 0.10 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................GGTTCGCGCTACTGTTA..................... 17 2 14 0.07 1 0 0 0 0 0 0 0 1 0 0
................................................TATTCGGACTTGTTAAACCT...................................................................................................................................................................................... 20 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................CACATCGCGCGATAAT.................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................GTTGGTTCGCGCTACT......................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..........................................................................AAAAAACACAAATCGCGT.............................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AACGTTGGTTCGCGCTACT......................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................TTTCTCAAAAAAACATAC..................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Generated: 04/23/2015 at 01:40 PM