ID:

dsi_11544

 Coordinate:

x:3388669-3388818 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

AACAAGAGTAAAAAAGCAGCGGCAACAACTCCCTAAAAATAGCAAAGAGCATTGTAAATATTTATATAAATAATTTATGCCTAATTAAAGTTTAAATTAATGAAGAAAACCAGCAAAAAAACATAAGAAACCAGAAGAACCATTTCAGATTTGTATGCAAATTTGTATATGTACGTACTTTCCTTTAATTTTAGCCAATCAGTTTGTAAGATTACAATTTTTTTTTGCATCTCTATAAAGAATAATGATA
***************************************************************************************************..................................((((.(((((..((((((((....))))))))...)))...)).))))...............****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M023
head
 M024
male body		 GSM343915
embryo
 SRR902009
testis
 SRR618934
dsim w501 ovaries
...........................................ATAGAGCATTGTAATTATT............................................................................................................................................................................................ 19 2 8 3.50 28 2 0 0 1 2 2 11 9 0 0 1
...................................................................................................ATGAAGAAAACCAGCAAAAAAACATAAGA.......................................................................................................................... 29 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................ATGTACGTACTTTCCTTTAATTTTAGCC...................................................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TACAATTTTTTTTTGCATCTCTATAAAGAA........ 30 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
...........................................................................TATGCCTAATTAAAGTTTAAATTAATGA................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTAGCCAATCAGTTTGTAAGATTAC................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................TAAGAAACCAGAAGAACCATTTCAGA..................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................AGAACCATTTCAGATTTGTATGCAAATT....................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......CAAAAAAAGCAGCGGCAACAACTCCC......................................................................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...AAGAGTAAAAAAGCAGCGGCAACAA.............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................TATATAAATAATTTATGCCTAATTAAA................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAAACATAAGAAACCAGAAGAACCA............................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................ATAAGAACCATTTCAGATTTGTATGCAAA......................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTCCTTTAATTTTAGCCAATCAGTT.............................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................TCCCTAAAAATAGCAAAGAGCATTGTA.................................................................................................................................................................................................. 27 0 2 1.00 2 0 0 0 1 1 0 0 0 0 0 0
..........................................................................................TTTAAATTAATGAAGAAAACCAGCAAAAA................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GAAGAACCATTTCAGATTTGTATGCAAA......................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........AAAAAAGCAGCGGCAACAACTCCCTA....................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................TGAAGAAAACCAGCAAAAAAACATAAGA.......................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AACATAAGAAACCAGAAGAACCAT........................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................TTAAATTAATGAAGAAAACCAGCAAAAA................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ACCAGAAGAACCATTTCAGATTTGTA............................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................TAAGAAACCAGAAGAACCATTT......................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TACAATTTTTTTTTGCATCTCTATAAA........... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........TAAAAAAGCAGCGGCAACAACTCCCTA....................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTTTTTTTTGCATCTCTATAAAGAA........ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...AAGAGTAAAAAAGCAGCGGCAACA............................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................AGAGCATTGTAATTATT............................................................................................................................................................................................ 17 1 6 0.83 5 1 0 0 2 1 0 0 0 0 0 1
..........................................................................................TTTAAATGAATGAAGAAAA............................................................................................................................................. 19 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1
...........................................ATAGAGCATTGTAATTAT............................................................................................................................................................................................. 18 2 20 0.30 6 0 0 0 2 0 0 2 2 0 0 0
............................................................................................TAAAAAAATGAAGAAAACCAGCA....................................................................................................................................... 23 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................AATTCTAGCCAATAAGTTCGT........................................... 21 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
..............................................GAGCATTGTAATTATT............................................................................................................................................................................................ 16 1 16 0.13 2 0 0 0 1 1 0 0 0 0 0 0
..................................................................................................................AAAAAAACTTAAGAAGCCA..................................................................................................................... 19 2 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0
....AGAGCAAAAAGGCAGCGGCG.................................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.............................................AGAGCATTGTAATTA.............................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................AAGAGAATTGTAAATA.............................................................................................................................................................................................. 16 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTGTTCTCATTTTTTCGTCGCCGTTGTTGAGGGATTTTTATCGTTTCTCGTAACATTTATAAATATATTTATTAAATACGGATTAATTTCAAATTTAATTACTTCTTTTGGTCGTTTTTTTGTATTCTTTGGTCTTCTTGGTAAAGTCTAAACATACGTTTAAACATATACATGCATGAAAGGAAATTAAAATCGGTTAGTCAAACATTCTAATGTTAAAAAAAAACGTAGAGATATTTCTTATTACTAT
******************************************************..................................((((.(((((..((((((((....))))))))...)))...)).))))...............*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
....................................................................................................................................................................................AGGAAATTCAAATCGG...................................................... 16 1 5 0.20 1 1 0
...............................................................................................................................TTTCATCTTTTTGGTAAAGTCT..................................................................................................... 22 3 5 0.20 1 1 0
................................................................................................................CGGTTTTTTGTATTCT.......................................................................................................................... 16 1 10 0.10 1 0 1
..........................................................................................................................................................................CCTGCATGAAAGGATA................................................................ 16 2 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:3388619-3388868 + dsi_11544 AACAAG--------------------AG-TA----AA----------AA--------------------AGCAGCGG------CAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--GCATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAGTTTAA---AT-TAA-TGAAGA-------AAACCAGC----------AA--------------------------------------------------------------------------AAA----A---------------------AC--------------------------------------------------ATAA------------GAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTACAATT-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-TAATGA---TA
droSec2 scaffold_4:3020578-3020827 - AACAAG--------------------AG-TA----AA----------AA--------------------AGCAGCGG------CAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--GCATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAGTTTAA---AT-TAA-TGAAGA-------AAACCAGC----------AA--------------------------------------------------------------------------AAA----A---------------------AC--------------------------------------------------ATAA------------GAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTACAATT-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-TAATGA---TA
dm3 chrX:3682309-3682558 + AACAAG--------------------AG-TA----AT----------AA--------------------AGCAGCGG------CAAGAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--GCATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAGTTTAA---AT-TAA-TGAAGA-------AAACCAGC----------AA--------------------------------------------------------------------------AAA----A---------------------AC--------------------------------------------------ATAA------------AAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTAAATTT-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-TAATGA---TA
droEre2 scaffold_4690:1072872-1073118 + AACAAG--------------------AA-A-----AA----------AA--------------------AGCAGCGG------CAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--GAACTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAGTTAAA---AT-TAA-TGAAAA-------AAACCCGT----------AA--------------------------------------------------------------------------AAA----AAAAA-----------------------------------------------------------------------------------CAAAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTATAAGATTAC--TT-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-TAATGA---TA
droYak3 X:4728805-4729051 - AACAAG--------------------AA-TA-----T----------AA--------------------AGCAGCGG------CAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--GAACTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAGTTAAA---AT-TAA-TGAAGA-------AAACCCGT----------AA--------------------------------------------------------------------------AAA----A---------------------AC--------------------------------------------------A-------------TAAAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTAC-TTT-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-TAATGA---TG
droEug1 scf7180000408900:67748-68015 - AACAAG--------------------AA-GA----AG----------TA--------------------AGCAGCGG------CAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--AACTTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAAT----------TAA-AGAAGA-------AAATCCGTAAACACAA--AA--------------------------------------------------------------------------AAG----A-AAA---------CAAAACAAAC--------------------------------------------------A-------------TCAAAACCAGAAATAACCATTTCA-GTTTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTACTTTT-TTTTTTT-----------------------------GTCATCTCTTTAAATAACTAACGATAATA
droBia1 scf7180000302126:1411041-1411296 - AAAAAA--------------------GA-TA----AA----------AACAAA----------------AGCAGCGG------AAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--AAACTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAATTAAA---AT-TAA----AGA-------AAATCCGT----------AA--------------------------------------------------------------------------AAA----A--AA---------CGAAACAAAC--------------------------------------------------G-------------CAAAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGAAC----TT-TTTTTTT-----------------------------G-CATCTCCATAAAGAA-TAACGA---TA
droTak1 scf7180000415078:337890-338144 + AACAAG--------------------AA-GA-AA-AA----------AA--------------------AGCAGCGG------CAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--AAACTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAATTAAA---AT-TAA----AGA-------AAATCCGT----------AA--------------------------------------------------------------------------AAA----A--AA---------CAAAACAAAC--------------------------------------------------A-------------TAAAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCAAA----TCAGTTTGTAAGATTAC---T-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-TAATGA---TA
droEle1 scf7180000490996:937726-938003 + AACAAG--------------------TT--AAAGAAA----------AA--------------------AGCAGCAGCAACAACAACAACCCCCTAAAAA-------------------------------------A---------TAGCAAAGA--AAATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCAT---AA-TTTAAATAAAA---AATTAA-TGAGGA-------AAATCCGT----------AA--------------------------------------------------------------------------AAGAAAAAAAAACGA----AACAAAAGAAAC--------------------------------------------------A-------------TAAAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGAAT----TT-TTTTTTT-----------------------------GTCATCTCTATAAAGAA-TTACGA---TA
droRho1 scf7180000776529:1913-2180 - AACAAG--------------------TC-GA-AG-AA----------AA--------------------AGCAGCAG------CAACAACTCCCTAA-AA-------------------------------------A-----AAAATAGCAAAGA--AAACTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAATAAAA---AT-TAA-TAAGGA-------AAATCCGT----------AA--------------------------------------------------------------------------AAA----AAAAACAA----TACAAAACAAAC--------------------------------------------------A-------------TAAAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTA----TTTTTTTTT-------------------------------CATCTCTATAAAGAA-TAATGA---TA
droFic1 scf7180000453901:788304-788546 - AACAAA--------------------AGGT---------------------------------------AGAAGCAG------CAAAAACTCCCTAA-AA-------------------------------------A---------TAGTAAAGA--AAATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAATTAAA---AT-TAA-AGAGAA-------A----CGC------AA--AA--------------------------------------------------------------------------AAA----A-AAA--------------CAAAA--------------------------------------------------A-------------C-AAAACCA----GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTCA--TT-TTTTTTT-----------------------------G-CATCTTTATAAAGGA-TAACGA---TA
droKik1 scf7180000302685:149877-150135 + AAAAAA--------------------AA-CA----AA----------AA--------------------CAAAACAA------AAACAACTCCCTAACAA-------------------------------------G---------TAGCAAAGA--AAATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AAAATACAATTAAA---AT-TAA-ACAAGA-------AAA----------------------------------------------------------------------------------------------------------------CAAAACCAAG--------------------------------------------------ATAAAAATGCAAAAGAAGAACCAGAA-AAACCATTTCA-GATTTATATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGTTT----TTTTTTTTTTCTTT-------------------------T---T-TGTGTGTTTTA-TAGTGA---GA
droAna3 scaffold_13047:143707-143945 + GCGGCA--------------------AG-AA-AG-GA----------AA--------------------AGGGACGA------AAAAAAGGCCCTAACAA-------------------------------------A---------TAGCAAAAA--AAATTGTACATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAACTAAA---AT-TAA-TGATGA-------AAATCTAA----------AA--------------------------------------------------------------------------AAA----A-AAACGA-------------------------------------------------------------------TAAGA------AGCAAAGAGCAGAA-AAACTGTTTCA-GATTTGTA--------------------------------------------TG-------TACGTACTTTCCTTTAATTTTAGCAAA----TCAGTTTGTAAGAAT----TTTTTTTTTTATTT-------------------------TTTTTTTTTATAC---------------T
droBip1 scf7180000395452:2978-3204 - GGAAAA--------------------AG-GA----AA----------AA--------------------A-----TA------CAAAAAATCCCTAACAA-------------------------------------A---------TAGCAAAAAA-AAGTTGTACATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAACTAAA---AT-TAA-TGATGA-------AAATCTAC----------AA--------------------------------------------------------------------------AAA----A--AACGA-------------------------------------------------------------------TAAGA------AGTAAAAAGCAGAA--AACTGTTTCC-GATTTGTA--------------------------------------------TG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATT----TTTTTTTTTT-------------------------------AATTTTTTT----------TTA---TA
dp5 XL_group1e:8484242-8484448 - ACGAAG--------------------AA-GA----AGTTCTACAGAGAA--------------------GG----------------------------------------------------------------------------TGGCAGAGA--AGA------------------------------------------------------------------------------------------------------------------------------------AAGAGCAAGAGAAGCAGA----------A--------------------------------------------------------------------------TGAGAAAGAGAGA----AGAAGC--TGCAAAG--------------------------------------------------G-------------CAAAAACCAGAA-ATACCATTTCA-GAA-------CC-GATT-----------------------------TGTATATGTAATG--TACGTACTTTCCTTTAATTTTAGCCAATCAATCAGTTTGTAAGTC-----TT-TTTTTTT-----------------------------G-TTGCCCCAAATGCGA-TAACGA---CA
droPer2 scaffold_13:88782-88944 + AAAG----------------------CC--GAAAA--------------CAGAAGATGCTGCAACAAGAAGCAA-AA------CAAAAACTCCCTAA-AA-------------------------------------AACA---AAGTATCAAAAAATGAATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAATTAAA---AC-TAAACGAGGA-------AAAGCTGA----------AA--------------------------------------------------------------------------A-A----A---------------------GC--------------------------------------------------AGAA------------GAAAACAAAA-AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004963:3766631-3766804 + AGCGAA--------------------AG-CG----AA----------AG--------------------CGAGATAG------TGACAGAGCTTCAA-AA-------------------------------------G---------CTACAAATA--ATTTGGTAAATTCT-GTTT---------------------------------------------------------------------TAAAACAATTATTGTAGAACAA--TAAATTCCAA---TT-CAA-TAGAAA-----A-AAAAACAC----------AA--------------------------------------------------------------------------AAA----A---------------------AC--------------------------------------------------T-------------GAAAATTCA--A-AATTAAACTCA-GGTATGCAAATA-AAT------------------------------TGTATAGC-------TAC-------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:6999434-6999843 + AACAGGAAGCAAGAGGCAACAA------------------------------------------CAAG--------------------------------------TTGCAACTGAAGAACAAGCAA-CCCCATAAA-ACAAACAAGTAGCAAAGA---AACTGTAAATATTAAATATACATATATAT----GTAATAATAAA------------------------------AATAAAATAATACT-AATTAATTTATGCCT---AA-TTAAAATTTAATAAATTCGA-TGCAACAG---------CCAC------A-AA-A-------------------------------------------------GCAAGAGCAAAAGCAAAAGCAAAGCAAAAAATA----CAGTAAAAAA--CAAAAACAAAGAAACAAAAAAAAAAAACGAAAAGAAAAGAAATGAAAAGAAAAACAAG-------------CAAAAATC--AA-GAACCATTTCATGAGACGCGTACAAAGCT-----------------------------TGTGCATGTG-CG--TGCGTACTTTCCTTTAATTTTAGCCA-----TCAGTCT-TAAGTGTGT----TTTTTTTTTTT--------------------------T-TATTGTCAGCGTCAA-TAAATA---TA
droMoj3 scaffold_6473:12473651-12474004 + AAAAAA--------------------AG-CA----AA----------AA--------------------C-------------------------------------------------------------------G---------TAGCAAAGA---AACTGTAAATATTAAATATACATATATATAATTGTAATAATACA------------------------------AATA--ATAAGAAT-AATTAATTTATGCCT---AA-TTACAATTTAATAAATTCGA-TGAAAGAG---------CCAC------A-AA-A------------------------------------------------------------------AGCAAAGCAAAAAATA----CAGCAAAAAG--CGTAAA---------------------------------------------------G-------------CGAAAATC--GA-GAACCATTTCAAGAGATGCGTACT-AATTATATAAATTATATTATACATACATACATATGTACATGTA-CGTGAGCGTACTTTCCTTTAATTTTAGCCAA-----CAGTCT-TAAGTGTGAACTT-TTTTTTTCTTATACATATATACACACACACACACAGG-CACATATATAATATA-TATGTA---TA
droGri2 scaffold_14853:5566328-5566763 - AACCAGAAGCAAGAAGCAACAACAGGCA--GAAGG--------------CAGAA---------------GGCGGCAG------CAACAGTTGCAGG----TTGTTGTTGCAGCTGCTGAGCAAGCAAAACCCATAAA-A----CAAGTAGCAAAGA---AATTGTAAATATTATATATACATATATGT------AAAA-AACAAAAACAAAACAAAAAAAAAAAACAAAAAAAAAAA--AAAAAAAT-AATTAATTTATGCCT---AA-TTAAAGTTTAATGAATCCAA-AGAAAGAG---------CCGC------A-AA-AAATTAACAGAGAAGCAAAGCAAAGCAAAGCAAAAATACAGCAAGCAAAAGCAAAAGCAGAAGCA-----------------A-AA--------------GCAAAA--------------------------------------------------G-------------C-AAAATC--GA-GAACCATTTCAAGAGATGCGTACAAAATC-----------------------------TGTGTATGTA-CG--TGCGTACTTTCCTTTAATTTTAGCCA-----TCAGTTT-TAAGAGTG----TTTTTTTTTCTTT-------------------------G-AAT-TATT--------CAATTA---TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AACAAG--------------------AG-TA----AA----------AA--------------------AGCAGCGG------CAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--GCATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAGTTTAA---AT-TAA-TGAAGA-------AAACCAGC----------AA--------------------------------------------------------------------------AAA----A---------------------AC--------------------------------------------------ATAA------------GAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTACAATT-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-TAATGA---TASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................A-TGAAGA-------AAACCAGC----------AA--------------------------------------------------------------------------AAA----A---------------------AC--------------------------------------------------ATAA------------GA........................................................................................................................................................................................................2913.00300000003000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG-------TACGTACTTTCCTTTAATTTTAGCC.............................................................................................2812.00200000020000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATT-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-...........3012.00200000011000000000
................................................................................................................................................................................................................................................................TATGCCT---AA-TTAAAGTTTAA---AT-TAA-TGA...................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000002000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCCAA----TCAGTTTGTAAGATTAC......................................................................2611.00100000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA------------GAAACCAGAA-GAACCATTTCA-GA.................................................................................................................................................................................2611.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------.....................................................................................................................................2811.00100000001000000000
...AAG--------------------AG-TA----AA----------AA--------------------AGCAGCGG------CAACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
.............................................................................................................................................................................TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................AAA----A---------------------AC--------------------------------------------------ATAA------------GAAACCAGAA-GAACCA.........................................................................................................................................................................................2611.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTTAATTTTAGCCAA----TCAGTT.................................................................................2511.00100000000010000000
..........................................................................................TCCCTAA-AA-------------------------------------A---------TAGCAAAGA--GCATTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2721.00200000000110000000
...................................................................................................................................................................................................................................................................................TTTAA---AT-TAA-TGAAGA-------AAACCAGC----------AA--------------------------------------------------------------------------AAA----....................................................................................................................................................................................................................................................................................................2911.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-GAACCATTTCA-GATTTGTATGCA-AA....................................................................................................................................................................2811.00100000001000000000
..............................A----AA----------AA--------------------AGCAGCGG------CAACAACTCCCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
..................................................................................................................................................................................................................................................................................................TGAAGA-------AAACCAGC----------AA--------------------------------------------------------------------------AAA----A---------------------AC--------------------------------------------------ATAA------------GA........................................................................................................................................................................................................2811.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------AC--------------------------------------------------ATAA------------GAAACCAGAA-GAACCAT........................................................................................................................................................................................2411.00100000000000010000
....................................................................................................................................................................................................................................................................................TTAA---AT-TAA-TGAAGA-------AAACCAGC----------AA--------------------------------------------------------------------------AAA----....................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGAA-GAACCATTTCA-GATTTGTA...........................................................................................................................................................................2611.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA------------GAAACCAGAA-GAACCATTT......................................................................................................................................................................................2211.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATT-TTTTTTT-----------------------------G-CATCTCTATAAA...............2711.00100000001000000000
.............................TA----AA----------AA--------------------AGCAGCGG------CAACAACTCCCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-...........2511.00100000000100000000
...AAG--------------------AG-TA----AA----------AA--------------------AGCAGCGG------CAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
droSec2
AACAAG--------------------AG-TA----AA----------AA--------------------AGCAGCGG------CAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--GCATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAGTTTAA---AT-TAA-TGAAGA-------AAACCAGC----------AA--------------------------------------------------------------------------AAA----A---------------------AC--------------------------------------------------ATAA------------GAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTACAATT-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-TAATGA---TASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
AACAAG--------------------AG-TA----AT----------AA--------------------AGCAGCGG------CAAGAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--GCATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAGTTTAA---AT-TAA-TGAAGA-------AAACCAGC----------AA--------------------------------------------------------------------------AAA----A---------------------AC--------------------------------------------------ATAA------------AAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTAAATTT-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-TAATGA---TASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
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Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
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S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
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Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
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Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
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Head		SRR001348
Head		SRR001349
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Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
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Embryo		SRR014270
Embryo		SRR014271
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Ovary		SRR014274
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Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
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Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAA-GAACCATTTCA-GATT...............................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................T-TAA-TGAAGA-------AAACCAGC----------AA--------------------------------------------------------------------------AAA----A---------------------A.............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATG-------TACGTACTTTCCTTTAATT...................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................ATGCCT---AA-TTAAAGTTTAA---A............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................CCCTAA-AA-------------------------------------A---------TAGCAAAGA--GCATTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCAGCGG------CAAGAACTCCCTAA-AA-------------------------------------A---------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................AA--------------------AGCAGCGG------CAAGAACTCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACCAGAA-GAACCATTT......................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
............................................................................................................................................................................................................................................................................................T-TAA-TGAAGA-------AAACCAGC----------AA--------------------------------------------------------------------------AAA----A---------------------AA--------------------------------------------------CA........................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAA-GAACCATTTCA-GATTTGTATGC........................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-GAACCATTTCA-GATTTGT............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................A---------TAGCAAAGA--GCATTGTAAATATT-TATA---------------------------------------------------------------------A-................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------ATAA------------AAAACCAGAA-GAACCATTTCA-GA.................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAA-GAACCATTTCA-GA.................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AC--------------------------------------------------ATAA------------AAAACCAGAA-GAACCATTTCA-GA.................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGAA-GAACCATTTCA-GATTTGTA...........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AAAACCAGAA-GAACCATTTCA-GATT...............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTT-TTTTTTT-----------------------------G-CATCTCTAT..................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAGATTAAATTT-TTTTTTT-----------------------------.............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATGCA-AATT-----------------------------TGTATATG-------......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGAA-GAACCATTTCA-GAT................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TCAGTTTGTAAGATTAAAT....................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTAGCCAA----TCAGTTTGTAAGA..........................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GAACCATTTCA-GATTTGTATGCA-......................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AA-TGAAGA-------AAACCAGC----------AA--------------------------------------------------------------------------AAA----A---------------------AC--------------------------------------------------..........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AG-TA----AT----------AA--------------------AGCAGCGG------CAAGAACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTCCTTTAATTTTAGCCAA----TCAGTT.................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CAAGAACTCCCTAA-AA-------------------------------------A---------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCCAA----TCAGTTTGTAAGATTAAA.....................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AACAAG--------------------AA-A-----AA----------AA--------------------AGCAGCGG------CAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--GAACTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAGTTAAA---AT-TAA-TGAAAA-------AAACCCGT----------AA--------------------------------------------------------------------------AAA----AAAAA-----------------------------------------------------------------------------------CAAAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTATAAGATTAC--TT-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-TAATGA---TASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................TAA-AA-------------------------------------A---------TAGCAAAGA--GAACTGTAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..............................................................................................TAA-AA-------------------------------------A---------TAGCAAAGA--GAACTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
............................................................................G------CAACAACTCCCTAA-AA-------------------------------------A---------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...........................................................................................CCCTAA-AA-------------------------------------A---------TAGCAAAGA--GAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...............................................AA--------------------AGCAGCGG------CAACAACTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
...................................................................................................A-------------------------------------A---------TAGCAAAGA--GAACTGTAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
............................................................................................................................................................................................................................................................AATTTATGCCT---AA-TTAAAGTTAAA---AT-..........................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGAA-GAACCATTTCA-GATT...............................................................................................................................................................................2311.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCAGAA-GAACCATTTCA-GAT................................................................................................................................................................................2311.0010000100
droYak3
AACAAG--------------------AA-TA-----T----------AA--------------------AGCAGCGG------CAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--GAACTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAGTTAAA---AT-TAA-TGAAGA-------AAACCCGT----------AA--------------------------------------------------------------------------AAA----A---------------------AC--------------------------------------------------A-------------TAAAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTAC-TTT-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-TAATGA---TGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................A---------TAGCAAAGA--GAACTGTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTAATTTTAGCCAA----TCAGTTTGTAA............................................................................2811.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG-------TACGTACTTTCCTTT.......................................................................................................1811.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------TAAAAACCAGAA-GAACCATTTCA-...................................................................................................................................................................................2411.00100000010000
........................................................................................................................................................................TATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---..............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.....G--------------------AA-TA-----T----------AA--------------------AGCAGCGG------CAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEug1
AACAAG--------------------AA-GA----AG----------TA--------------------AGCAGCGG------CAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--AACTTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAAT----------TAA-AGAAGA-------AAATCCGTAAACACAA--AA--------------------------------------------------------------------------AAG----A-AAA---------CAAAACAAAC--------------------------------------------------A-------------TCAAAACCAGAAATAACCATTTCA-GTTTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTACTTTT-TTTTTTT-----------------------------GTCATCTCTTTAAATAACTAACGATAATASizeHit CountTotal NormTotal
No Reads
droBia1
AAAAAA--------------------GA-TA----AA----------AACAAA----------------AGCAGCGG------AAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--AAACTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAATTAAA---AT-TAA----AGA-------AAATCCGT----------AA--------------------------------------------------------------------------AAA----A--AA---------CGAAACAAAC--------------------------------------------------G-------------CAAAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGAAC----TT-TTTTTTT-----------------------------G-CATCTCCATAAAGAA-TAACGA---TASizeHit CountTotal NormTotal
No Reads
droTak1
AACAAG--------------------AA-GA-AA-AA----------AA--------------------AGCAGCGG------CAACAACTCCCTAA-AA-------------------------------------A---------TAGCAAAGA--AAACTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAATTAAA---AT-TAA----AGA-------AAATCCGT----------AA--------------------------------------------------------------------------AAA----A--AA---------CAAAACAAAC--------------------------------------------------A-------------TAAAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCAAA----TCAGTTTGTAAGATTAC---T-TTTTTTT-----------------------------G-CATCTCTATAAAGAA-TAATGA---TASizeHit CountTotal NormTotal
No Reads
droEle1
AACAAG--------------------TT--AAAGAAA----------AA--------------------AGCAGCAGCAACAACAACAACCCCCTAAAAA-------------------------------------A---------TAGCAAAGA--AAATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCAT---AA-TTTAAATAAAA---AATTAA-TGAGGA-------AAATCCGT----------AA--------------------------------------------------------------------------AAGAAAAAAAAACGA----AACAAAAGAAAC--------------------------------------------------A-------------TAAAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGAAT----TT-TTTTTTT-----------------------------GTCATCTCTATAAAGAA-TTACGA---TASizeHit CountTotal NormTotal
No Reads
droRho1
AACAAG--------------------TC-GA-AG-AA----------AA--------------------AGCAGCAG------CAACAACTCCCTAA-AA-------------------------------------A-----AAAATAGCAAAGA--AAACTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAATAAAA---AT-TAA-TAAGGA-------AAATCCGT----------AA--------------------------------------------------------------------------AAA----AAAAACAA----TACAAAACAAAC--------------------------------------------------A-------------TAAAAACCAGAA-GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTA----TTTTTTTTT-------------------------------CATCTCTATAAAGAA-TAATGA---TASizeHit CountTotal NormTotal
No Reads
droFic1
AACAAA--------------------AGGT---------------------------------------AGAAGCAG------CAAAAACTCCCTAA-AA-------------------------------------A---------TAGTAAAGA--AAATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAATTAAA---AT-TAA-AGAGAA-------A----CGC------AA--AA--------------------------------------------------------------------------AAA----A-AAA--------------CAAAA--------------------------------------------------A-------------C-AAAACCA----GAACCATTTCA-GATTTGTATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATTCA--TT-TTTTTTT-----------------------------G-CATCTTTATAAAGGA-TAACGA---TASizeHit CountTotal NormTotal
No Reads
droKik1
AAAAAA--------------------AA-CA----AA----------AA--------------------CAAAACAA------AAACAACTCCCTAACAA-------------------------------------G---------TAGCAAAGA--AAATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AAAATACAATTAAA---AT-TAA-ACAAGA-------AAA----------------------------------------------------------------------------------------------------------------CAAAACCAAG--------------------------------------------------ATAAAAATGCAAAAGAAGAACCAGAA-AAACCATTTCA-GATTTATATGCA-AATT-----------------------------TGTATATG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGTTT----TTTTTTTTTTCTTT-------------------------T---T-TGTGTGTTTTA-TAGTGA---GASizeHit CountTotal NormTotal
No Reads
droAna3
GCGGCA--------------------AG-AA-AG-GA----------AA--------------------AGGGACGA------AAAAAAGGCCCTAACAA-------------------------------------A---------TAGCAAAAA--AAATTGTACATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAACTAAA---AT-TAA-TGATGA-------AAATCTAA----------AA--------------------------------------------------------------------------AAA----A-AAACGA-------------------------------------------------------------------TAAGA------AGCAAAGAGCAGAA-AAACTGTTTCA-GATTTGTA--------------------------------------------TG-------TACGTACTTTCCTTTAATTTTAGCAAA----TCAGTTTGTAAGAAT----TTTTTTTTTTATTT-------------------------TTTTTTTTTATAC---------------TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................A-AAACGA-------------------------------------------------------------------TAAGA------AGCAAAGA......................................................................................................................................................................................................2011.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TTTTTTTTTTATTT-------------------------TTTTTTTT.....................23200.051010000
droBip1
GGAAAA--------------------AG-GA----AA----------AA--------------------A-----TA------CAAAAAATCCCTAACAA-------------------------------------A---------TAGCAAAAAA-AAGTTGTACATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAACTAAA---AT-TAA-TGATGA-------AAATCTAC----------AA--------------------------------------------------------------------------AAA----A--AACGA-------------------------------------------------------------------TAAGA------AGTAAAAAGCAGAA--AACTGTTTCC-GATTTGTA--------------------------------------------TG-------TACGTACTTTCCTTTAATTTTAGCCAA----TCAGTTTGTAAGATT----TTTTTTTTTT-------------------------------AATTTTTTT----------TTA---TASizeHit CountTotal NormTotal
No Reads
dp5
ACGAAG--------------------AA-GA----AGTTCTACAGAGAA--------------------GG----------------------------------------------------------------------------TGGCAGAGA--AGA------------------------------------------------------------------------------------------------------------------------------------AAGAGCAAGAGAAGCAGA----------A--------------------------------------------------------------------------TGAGAAAGAGAGA----AGAAGC--TGCAAAG--------------------------------------------------G-------------CAAAAACCAGAA-ATACCATTTCA-GAA-------CC-GATT-----------------------------TGTATATGTAATG--TACGTACTTTCCTTTAATTTTAGCCAATCAATCAGTTTGTAAGTC-----TT-TTTTTTT-----------------------------G-TTGCCCCAAATGCGA-TAACGA---CASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................GAGCAAGAGAAGCAGA----------A--------------------------------------------------------------------------TGAGAA......................................................................................................................................................................................................................................................................................................2311.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------CC-GATT-----------------------------TGTATATGTAATG--TACGT.................................................................................................................2611.0010000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACCAGAA-ATACCATTTCA-GAA-------C........................................................................................................................................................................2511.0010001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AGA----AGAAGC--TGCAAAG--------------------------------------------------G-------------CA..........................................................................................................................................................................................................1911.0010000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGCCAATCAATCAGTTTGTAAGTC-----....................................................................2811.0010010000000
droPer2
AAAG----------------------CC--GAAAA--------------CAGAAGATGCTGCAACAAGAAGCAA-AA------CAAAAACTCCCTAA-AA-------------------------------------AACA---AAGTATCAAAAAATGAATTGTAAATATT-TATA---------------------------------------------------------------------T-AAATAATTTATGCCT---AA-TTAAAATTAAA---AC-TAAACGAGGA-------AAAGCTGA----------AA--------------------------------------------------------------------------A-A----A---------------------GC--------------------------------------------------AGAA------------GAAAACAAAA-AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................A--------------CAGAAGATGCTGCAACAAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
droWil2
AGCGAA--------------------AG-CG----AA----------AG--------------------CGAGATAG------TGACAGAGCTTCAA-AA-------------------------------------G---------CTACAAATA--ATTTGGTAAATTCT-GTTT---------------------------------------------------------------------TAAAACAATTATTGTAGAACAA--TAAATTCCAA---TT-CAA-TAGAAA-----A-AAAAACAC----------AA--------------------------------------------------------------------------AAA----A---------------------AC--------------------------------------------------T-------------GAAAATTCA--A-AATTAAACTCA-GGTATGCAAATA-AAT------------------------------TGTATAGC-------TAC-------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................AG--------------------CGAGATAG------TGACAGAGCTTCAA-AA-------------------------------------G---------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
......................................................................................................................................................................................................................................................TAAAACAATTATTGTAGAACAA--T.........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
droVir3
AACAGGAAGCAAGAGGCAACAA------------------------------------------CAAG--------------------------------------TTGCAACTGAAGAACAAGCAA-CCCCATAAA-ACAAACAAGTAGCAAAGA---AACTGTAAATATTAAATATACATATATAT----GTAATAATAAA------------------------------AATAAAATAATACT-AATTAATTTATGCCT---AA-TTAAAATTTAATAAATTCGA-TGCAACAG---------CCAC------A-AA-A-------------------------------------------------GCAAGAGCAAAAGCAAAAGCAAAGCAAAAAATA----CAGTAAAAAA--CAAAAACAAAGAAACAAAAAAAAAAAACGAAAAGAAAAGAAATGAAAAGAAAAACAAG-------------CAAAAATC--AA-GAACCATTTCATGAGACGCGTACAAAGCT-----------------------------TGTGCATGTG-CG--TGCGTACTTTCCTTTAATTTTAGCCA-----TCAGTCT-TAAGTGTGT----TTTTTTTTTTT--------------------------T-TATTGTCAGCGTCAA-TAAATA---TASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCT-----------------------------TGTGCATGTG-CG--TGC...................................................................................................................2112.002000000000000000000000000000000000000001100000000000000000000000
.....................................................................................................................................TAAA-ACAAACAAGTAGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCT-----------------------------TGTGCATGTG-CG--TGCGTACT..............................................................................................................2411.001000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AA-GAACCATTTCATGAGACGC............................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACGAAAAGAAAAGAAAT........................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................CAAGCAA-CCCCATAAA-ACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000010000000000000000000000000000000000000
.....................A------------------------------------------CAAG--------------------------------------TTGCAACTGAAGAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACGCGTACAAAGCT-----------------------------T....................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTTTAGCCA-----TCAGTCT-TAAGT..........................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-----------------------------TGTGCATGTG-CG--TGCGTA................................................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT-----------------------------TGTGCATGTG-CG--TGCGTACT..............................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CAAAAGCAAAAGCAAAGCAAAAAATA----C..............................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCT-----------------------------TGTGCATGTG-CG--TGCGTAC...............................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATTTTAGCCA-----TCAGTCT-TAAGTGT........................................................................2811.001000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................ACTGAAGAACAAGCAA-CCCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAGAACAAGCAA-CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.001000000000000000000000000000000000000000000000000000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGAAAAACAAG-------------CAAA........................................................................................................................................................................................................1920.501000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAAACAAG-------------CAAAA.......................................................................................................................................................................................................1860.171000000000000000000000010000000000000000000000000000000000000000
droMoj3
AAAAAA--------------------AG-CA----AA----------AA--------------------C-------------------------------------------------------------------G---------TAGCAAAGA---AACTGTAAATATTAAATATACATATATATAATTGTAATAATACA------------------------------AATA--ATAAGAAT-AATTAATTTATGCCT---AA-TTACAATTTAATAAATTCGA-TGAAAGAG---------CCAC------A-AA-A------------------------------------------------------------------AGCAAAGCAAAAAATA----CAGCAAAAAG--CGTAAA---------------------------------------------------G-------------CGAAAATC--GA-GAACCATTTCAAGAGATGCGTACT-AATTATATAAATTATATTATACATACATACATATGTACATGTA-CGTGAGCGTACTTTCCTTTAATTTTAGCCAA-----CAGTCT-TAAGTGTGAACTT-TTTTTTTCTTATACATATATACACACACACACACAGG-CACATATATAATATA-TATGTA---TASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................AATAAATTCGA-TGAAAGAG---------CC...................................................................................................................................................................................................................................................................................................................................................................................................2112.002100001
..................................................................................................................................................................................................................................................................................................................................................................................................................ATA----CAGCAAAAAG--CGTAAA---------------------------------------------------G-------------CGAA........................................................................................................................................................................................................2411.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACATGTA-CGTGAGCGTAC...............................................................................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACATGTA-CGTGAGCGTA................................................................................................................2111.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTACATGTA-CGTGAGCGT.................................................................................................................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCCAA-----CAGTCT-TAAGTGTGAACTT-.................................................................2711.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAA-----CAGTCT-TAAGTGTG.......................................................................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------------------------------------G-------------CGAAAATC--GA-GAACCATT.......................................................................................................................................................................................2111.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................AATA----CAGCAAAAAG--CGTAAA---------------------------------------------------G-------------CGA.........................................................................................................................................................................................................2411.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGCGTACT-AATTATATA.............................................................................................................................................................2211.001000001
...................................................................................................................................................................................................................................................................................TTTAATAAATTCGA-TGAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-CGTGAGCGTACTTTCCTTTAAT....................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACACACACACACACAGG-C..........................2211.001100000
..............................A----AA----------AA--------------------C-------------------------------------------------------------------G---------TAGCAAAGA---AACTGTAAATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
....................................A----------AA--------------------C-------------------------------------------------------------------G---------TAGCAAAGA---AACTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACATGTA-CGTGAGCGTACT..............................................................................................................2211.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATATACACACACACAC.................................21180.061100000
droGri2
AACCAGAAGCAAGAAGCAACAACAGGCA--GAAGG--------------CAGAA---------------GGCGGCAG------CAACAGTTGCAGG----TTGTTGTTGCAGCTGCTGAGCAAGCAAAACCCATAAA-A----CAAGTAGCAAAGA---AATTGTAAATATTATATATACATATATGT------AAAA-AACAAAAACAAAACAAAAAAAAAAAACAAAAAAAAAAA--AAAAAAAT-AATTAATTTATGCCT---AA-TTAAAGTTTAATGAATCCAA-AGAAAGAG---------CCGC------A-AA-AAATTAACAGAGAAGCAAAGCAAAGCAAAGCAAAAATACAGCAAGCAAAAGCAAAAGCAGAAGCA-----------------A-AA--------------GCAAAA--------------------------------------------------G-------------C-AAAATC--GA-GAACCATTTCAAGAGATGCGTACAAAATC-----------------------------TGTGTATGTA-CG--TGCGTACTTTCCTTTAATTTTAGCCA-----TCAGTTT-TAAGAGTG----TTTTTTTTTCTTT-------------------------G-AAT-TATT--------CAATTA---TTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGCGTACAAAATC-----------------------------TGTG.................................................................................................................................2211.00110
...............................................................................................................................................................................................................................................................................................................................AA-AAATTAACAGAGAAGCAAAGCA................................................................................................................................................................................................................................................................................................................................................................2411.00101

Generated: 05/19/2015 at 05:47 AM