ID:

dsi_11496

 Coordinate:

3l:18460824-18460973 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.3 -21.0 -20.9 -20.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
PROTOP_BDNAP-

Sense Strand Reads

GGTTGTGCTGAAAGAGAAACGGCGTCATCAATTCATCAGATATACCAAAAGTATCTATACCATATAGATCCAACCAAAGACACTAGAACAACAAGTTGCGTAACGCCATACTTTTTTTTGGCACATGATTTTTTCGGCGTGGCTCTAGAGTGGCACCAGGCTCTCTTGAATTTTTGTTAAAGAGCGAGAGAGCGGAGAACTAATTGAATTATTTTGGGTGGGAAGAGAAGTGCGCCAACTTTTTTGTTTT
*************************************************************************************..........((......(((........(((((((((...(((((....(((.(((..(((...)))..))).))).....)))))..))))))))))))...))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 O001
Testis
 SRR902009
testis
 M053
female body
 M024
male body		 GSM343915
embryo
 M025
embryo
 M023
head
..........................................................................................................................................................................TTTTCGTTAAAGAGCGAGAGAGCGGA...................................................... 26 1 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TCGTTAAAGAGCGAGAGAGCGGA...................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GAACAACAAGTTGCGTAACGCCATACT.......................................................................................................................................... 27 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTTTTTGGCACATGATTTTTTCGGCGT.............................................................................................................. 27 0 3 2.33 7 1 2 1 1 1 0 0 0 1 0 0 0 0
.........................................................................................AACAAGTTGCGTAACGCCA.............................................................................................................................................. 19 0 2 2.00 4 0 0 2 0 0 0 2 0 0 0 0 0 0
.................................................................................................................................................................................................................TATTTTGGCTGGGAAGAGAAGTGCGCC.............. 27 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTGGCTGGGAAGAGAAGTGCGCCAACT.......... 27 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
.........................................................................................AACAAGTTGCGTAACGCCATACTT......................................................................................................................................... 24 0 1 2.00 2 0 0 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TTTTTTTTGGCACACGATTTTTTCGGC................................................................................................................ 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTCGTTAAAGAGCGAGAGAGCGGAGA.................................................... 26 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GAACAACAAGTTGCGTAACGCCATA............................................................................................................................................ 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
..........AAAGAGAAACGGCGTCATCA............................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AAGAGCGAGAGAGCGGAGAACTAA............................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................TCTTGAATTTTTGTTAAAGAGCGAGAGA........................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................AACGGCGTCATCAATTCATCAGATA................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTGAATTATTTTGGGTGGGAAGAGA...................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTTCGGCGTGGCTCTAGACTCGAA............................................................................................... 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................GGCGTGGCTCTAGAGTGGCACCA............................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................TTTCGTTAAAGAGCGAGAGAGCGGA...................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AACTAATTGAATTATTTTGGGTGGGA........................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTGCGGAACTCCAGACTTTTTTTT................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TCTCTTGAATTTTCGTTAAAGAGCGA............................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGTTAAAGAGCGAGAGAGCGGAG..................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TGGCTCTAGAGTGGCACCAGGCTCTC..................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................ACTAATTGAATTATTTTGGGTGGGAAGA........................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGAATTATTTTGGCTGGGAAGAGAAG.................... 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTGTTAAAGAGCGAGAGAGCGGA...................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTTTGGGTGGAAAGAGAAGAGCGT............... 24 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................AAGTTGCGTAACGCCATA............................................................................................................................................ 18 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GGAGAACAAATTGAATTATTTTGGGTG.............................. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TTTTGGCACATGATTTTTTCGGCGT.............................................................................................................. 25 0 3 1.00 3 0 1 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................TTTGGCACATGATTTTTTCGGCGTGG............................................................................................................ 26 0 3 1.00 3 1 0 0 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTCGTTAAAGAGCGAGAGAGCGGA...................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTATTTTGGGTGGGAAGAGAA..................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................GAACAACAAGTTGCGTAACGCCA.............................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GGAGAACTAATTGAATTATTTTGGGTG.............................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GAACAACAAGTTGCGTAACGCCATAC........................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TTTGGCACATGATTTTTTCGGCGT.............................................................................................................. 24 0 4 0.75 3 0 1 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................TGGCACATGATTTTTTCGGCGTGG............................................................................................................ 24 0 3 0.67 2 0 0 0 1 1 0 0 0 0 0 0 0 0
....................................................................................................................TTTGGCACATGATTTTTTCGGCGTG............................................................................................................. 25 0 3 0.67 2 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TTTTTGGCACATGATTTTTTCGGC................................................................................................................ 24 0 3 0.67 2 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................TTTTTTGGCACATGATTTTTTCGGC................................................................................................................ 25 0 3 0.67 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................TTGGCACATGATTTTTTCGGCGTGG............................................................................................................ 25 0 3 0.67 2 0 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................AACAAGTTGCGTAACGCTAT............................................................................................................................................. 20 1 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGGGTGGAAAGAGAAGAGCGC............... 21 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................AACAAGTTGCGTAACGCCATAC........................................................................................................................................... 22 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTGGCCGTGGCTCTAGAGTGGCT............................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTTTTTCGCCGTGGCTCTAGAGTGGA................................................................................................ 26 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................ACAAGTTGCGTAACGCCA.............................................................................................................................................. 18 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................AAGTTGCGTAACGCCA.............................................................................................................................................. 16 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTCGGGGTGGCTCTAGAGTGGTTC.............................................................................................. 24 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGTTAGAGAGCGAGAGAGCGAAGA.................................................... 25 2 15 0.40 6 0 2 0 4 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTGTTAGAGAGCGAGAGAGCGAA...................................................... 26 2 18 0.39 7 0 4 0 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTGGCACATGATTTTTTCGGCGTGGCTC......................................................................................................... 28 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTGGCACATGATTTTTTCGGCGTGGC........................................................................................................... 26 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CATGATTTTTTCGGCGTGGCTCTAGAG.................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGATTTTTTCGGCGTGGCTCTAG...................................................................................................... 23 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGATTTTTTCGGCGTGGCTCTAGAA.................................................................................................... 25 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGGCACATGATTTTTTCGGCGTGGC........................................................................................................... 25 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TTTTTGGCACATGATTTTTTCGGCG............................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TTTTGGCACATGATTTTTTCGGCG............................................................................................................... 24 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................TGGCACATGATTTTTTCGGCGTGGCT.......................................................................................................... 26 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................AACAAGTTGCGTAACGCCACACGTT........................................................................................................................................ 25 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTGGCACATGATTTTTTCGGCGTGGCT.......................................................................................................... 27 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................TTTTTTGGTACATGATTTTTTCGGCGT.............................................................................................................. 27 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TTTGGCACATGATTTTTTCGGCGTGGCT.......................................................................................................... 28 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CATGATTTTTTCGGCGTGGCTCTAGA..................................................................................................... 26 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................CATGATTTTTTCGGCGTGGCT.......................................................................................................... 21 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTTGTTAGAGAGCGAGAGAGCGAAGA.................................................... 26 2 15 0.27 4 0 1 0 3 0 0 0 0 0 0 0 0 0
........................................................................................................................GCACATGATTTTTTCGGCGT.............................................................................................................. 20 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GCACATGATTTTTTCGGC................................................................................................................ 18 0 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................TTGGCACATGATTTTTTCGG................................................................................................................. 20 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................TTTGGCACATGATTTTTTCGGC................................................................................................................ 22 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CATGATTTTTTCGGCGTGGCTT......................................................................................................... 22 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................TGGCACATGATTTTTTCGGCGT.............................................................................................................. 22 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TTTTTCGGCGTGGCTCTAGAG.................................................................................................... 21 0 20 0.20 4 0 2 0 0 0 0 0 0 0 0 0 1 1
.............................................................................................................................................................................TCGTTAAAGAGCGAGA............................................................. 16 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TTCAACCAAAGACACTAGAAC................................................................................................................................................................. 21 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................TGTTAGAGAGCGAGAGAGCGAAGA.................................................... 24 2 15 0.13 2 0 0 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGATTTTTTCGGCGTGGCTCCTT...................................................................................................... 23 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................TTTTCGGCGTGGCTCTAGAG.................................................................................................... 20 0 20 0.10 2 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................TTTTTTCGGCGTGGCTC......................................................................................................... 17 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGTTTAAGAGCGAGAGAGCGGAGAA................................................... 25 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................CAACCAAAGACACTAGAA.................................................................................................................................................................. 18 0 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGTTAGAGAGCGAGAGAGCGGAGA.................................................... 24 1 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGTTAGAGAGCGAGAAAGCGGAGA.................................................... 25 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTCAAGAGCGAGAGAGCGGAGATCTA................................................ 26 2 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGTTAGAGAGCGAGAGAGCGGAG..................................................... 24 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTTGTTAGAGAGCGAGAGAGCGGA...................................................... 24 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGTTAGAGAGCGAGAGAGCGG....................................................... 22 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTATTAGAGAGCGAGAGAGCGGA...................................................... 25 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGTTAGAGAGCGAGAGAGCGAA...................................................... 23 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTGTTAGAGAGCGAGAAAGCGG....................................................... 25 2 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTGTTAGGGAGCGAGAGAGCGGA...................................................... 26 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTGTTAGACAGCGAGAGAGCGG....................................................... 25 2 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GAGAGAAAGAGCGGAGAATTA................................................ 21 3 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................AATTTTTTTTAGAGAGCGAGAGAGCGCA...................................................... 28 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTTTTAGAGAGCGAGAGAGCGGA...................................................... 26 2 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTGTTAGACAGCGAGAGAGCGAA...................................................... 26 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTGTTAGAGAGCGAGAGAGCGA....................................................... 25 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................CATTTTTTCGGCGTGGCTCTAGG..................................................................................................... 23 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................GATTTTTTCGGCGTGGCTAT........................................................................................................ 20 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................TTTTTTCGGCGTGGCTCTAGA..................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................TTTTTGTTAGAGAGCGAGAGATCGAA...................................................... 26 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GATTTTTTCGGCGTGGC........................................................................................................... 17 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TTTTCGGCGTGGCTCTAGA..................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TTTTTCGGCGTGGCCCTAGAG.................................................................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................TTCGGCGTGGCTCTA....................................................................................................... 15 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................AACAAGCTGCGTAACGCCA.............................................................................................................................................. 19 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTCGGCGTGGCTCTAGAG.................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................TTTTTGGGCGTGGCTC......................................................................................................... 16 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTTTTTCGGCGTGGCTCTAGAGGG.................................................................................................. 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................TTTGTTAGAGAGCGAGAGATCGAA...................................................... 24 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGTTAGAGAGCGAGAGAGCG........................................................ 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATTTTTTCGGCGTGGC........................................................................................................... 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTGTTAGAGAGCGAGAGAGC......................................................... 23 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATTTTTTCGGCGTGGCTA......................................................................................................... 18 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTGTTAGAGATCGAGAGAG.......................................................... 22 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................CTTTTCGGCGTGGCTCTAGAG.................................................................................................... 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GGCGTGGCTCTAGAG.................................................................................................... 15 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TTTTTTTCGGCGTGGCTCTAG...................................................................................................... 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................TTTTTTCGGCGTGGCTCTAGAG.................................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCAACACGACTTTCTCTTTGCCGCAGTAGTTAAGTAGTCTATATGGTTTTCATAGATATGGTATATCTAGGTTGGTTTCTGTGATCTTGTTGTTCAACGCATTGCGGTATGAAAAAAAACCGTGTACTAAAAAAGCCGCACCGAGATCTCACCGTGGTCCGAGAGAACTTAAAAACAATTTCTCGCTCTCTCGCCTCTTGATTAACTTAATAAAACCCACCCTTCTCTTCACGCGGTTGAAAAAACAAAA
***********************************************************..........((......(((........(((((((((...(((((....(((.(((..(((...)))..))).))).....)))))..))))))))))))...))************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR902008
ovaries
 SRR902009
testis
.....................CGCAGTAGTTAAGTAGTCTATATGGTT.......................................................................................................................................................................................................... 27 0 1 3.00 3 1 1 1 0 0 0 0 0
...............CTTTGCCGCAGTAGTTAAGTAGTCT.................................................................................................................................................................................................................. 25 0 1 2.00 2 0 2 0 0 0 0 0 0
................................................TTCATAGATATGGTATATCTAGGTTGGT.............................................................................................................................................................................. 28 0 1 2.00 2 0 2 0 0 0 0 0 0
................................................................................................ACGCATTGCGGTATGAAAAAAAACCGTGT............................................................................................................................. 29 0 1 2.00 2 1 0 0 1 0 0 0 0
.................................................................................................................................AAAAAGCCGCACCGAGAT....................................................................................................... 18 0 20 1.30 26 0 0 0 0 0 26 0 0
...........................................................................................................................................................GGTCCGAGAGAACTTAAAAACAAT....................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................GTAGTTAAGAAGGCTATATGGTTTT........................................................................................................................................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................AGTTAAGTAGTCTATATGGTTTT........................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................AGATATGGTATATCTAGGTTGGTTT............................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................AGAGAACTTAAAAGCAATTTCT................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0
................TTTGCCGCAGTAGTTAAGTAGTCTAT................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................AGAGAACTTAAAAACAATTTCT................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................CGCAGTAGTTAAGAAGGCTATATGGT........................................................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................CTAGGTTGGTTTCTGTGATCTTGT................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................TTCATAGATATGGTATATCTAGGTTGGTTT............................................................................................................................................................................ 30 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................TGGTTTCTGTGATCTTGTTGTTCAAC........................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................CTAGGTTGGTTTCTGTGATCTTGTTGT............................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................GGTCCGAGAGAACTTAAAAGCAATT...................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
...............CTTTGCCGCAGTAGTTAAGTAGTCTAT................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................CGGGGTCCGAGAGAACTTAAAAGCAAT....................................................................... 27 2 1 1.00 1 0 0 0 0 0 0 1 0
........................................................................TGGTTTCTGTGATCTTGTTGTTC........................................................................................................................................................... 23 0 2 1.00 2 2 0 0 0 0 0 0 0
.............CTCTTTGCCGCAGTAGTTAAGTAGTCT.................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.................TTGCCGCAGTAGTTAAGTAGTCTAT................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................GGTTGGTTTCTGTGATCTTGTTGTT............................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0
.....................CGCAGTAGTTAAGTAGTCTATATGGT........................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................AAAACCCACCCTTCTCTTCACGCGGT............. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................TGTTTCTGTGATCTTGTTGTTCAAC........................................................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................CAAGCTCTCACCGAGGTCCGAGA...................................................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0
....................................................................AGGTTGGTTTCTGTGATCTTGTTGT............................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
......................GCAGTAGTTAAGTAGTCTATATGGTTG......................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0
....................................................AAGATATGGTATATCTAGGTTGGTTT............................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................GTTTTCATAGATATGGTATTTCT...................................................................................................................................................................................... 23 1 2 1.00 2 0 0 0 2 0 0 0 0
....................CCGCAGTAGTTAAGTAGTCTATATGGT........................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
...........TTCTCTTTGCCGCAGTAGTTAAGTAGTCT.................................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................TAAGAAGGCTATATGGTTTTCATAGAT................................................................................................................................................................................................. 27 2 2 0.50 1 1 0 0 0 0 0 0 0
...............................AAGAAGGCTATATGGTTTTCATAGAT................................................................................................................................................................................................. 26 2 2 0.50 1 1 0 0 0 0 0 0 0
...........................................TGGTTTTCATAGATATGGTATAT........................................................................................................................................................................................ 23 0 2 0.50 1 0 1 0 0 0 0 0 0
.....................................................AAATATGGTATATCTA..................................................................................................................................................................................... 16 1 16 0.38 6 2 0 1 0 3 0 0 0
.............................................................................................................................ACTAAAAAAGCCGCACCGAGATCT..................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................TGGTTTCTGTGATCTTGTT............................................................................................................................................................... 19 0 4 0.25 1 0 0 0 0 1 0 0 0
......................................................................CTTGGTTTCTGTGATCTTGTTGTTC........................................................................................................................................................... 25 1 17 0.06 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................TTGGTCCGAGAGAACTCAAAAACAAGTT..................................................................... 28 3 17 0.06 1 0 1 0 0 0 0 0 0
........................................................................TGGTTTCTGCGATCT................................................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0
..............................................................................................................................................AAGATCTCACCATGGT............................................................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................AAAAAAGCCGCACCGAGATCT..................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1
.................................................................................................................................AAAAAGCCGCACCGAGATCT..................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0
......................................................GATATGGTACCTCTAG.................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:18460774-18461023 - dsi_11496 GGTTGTGCTGAAAGAGAAACGGCGTCATCAATTCATCAGATATAC-C-A-------------------AAAGTATCTATACCATATAGATCCAACCAAA-GACACTAG------AACAACAAGTTGCGTAACGC-CATACTTTTTTTTGGCACATGATTTTTTCGGCGTGGCTCTA--GA-GTGGCACCAGGCTCTCTTGAATTTTTGTTAAAGAGCGAGAGAGCGG--------AGAACTAATTGAATTATTTTGGGTGGGAAGAGAAGTGCGCCAACT--TTTTTGTTTT
droSec2 scaffold_19:806130-806382 - GGTTGTGCTGAAAGAGAAACGGCGTCATCAATACATCAGATATAG-C-A-------------------AAAGTATCTATACCATATAGATCCAACCAAA-GACACTAG------AACAACAAGTTGCGTAACGC-CATACTTTTTTTTGGCACATGATTTTTTCGGCGTGGCTCTACTAGGGTGGCACCAGGCTCTCTTGAATTTTTGTTAAAGAGCGAAAGAGCGG--------AGAACAAATTGAATTATTTTGGGTGGGAAGAGAAGTGCGCAAACT--TATTTGTTTT
dm3 chrU:6413701-6413895 - GA---------------CACAGGCTCATCAATCAATCAAACAATC-A-ATAG-------GGAAAATTTAGAAAAAAAAG--AAGAAA-ATCTAACCAAA-GACCCTAG------AATAACAAGATGCGTAACGC-CATACGATTTTTTGGCACACGATTTTTTCGCCGTGGCTCTA--GAGGTGGCTCCAGGCTCTCTCGAATTTTTGTTAGAGAGCGAGAGAGCGG--------AGAGC----------------------------------------------------
droEre2 scaffold_4688:52698-52876 + CGCTGTGCTTGGAAAGTTTA-AT-----ACATT-------------CAGAAGTTTGGTT--------CAGAG----TATATA---A-GGCTATACTAAA-GACACTAA------AATAATAAGATGTGTAAAGC-CATACGATTTTTTTGCACATGATTTTTTCGTGCTGGCTCTA--AAGTTGGCTCCAGGCTCTCTCGAATTTTTGTTTAAAAGCCAGAGAG--------------------------------------------------------------------
droYak3 v2_chrUn_4989:307417-307581 - TT--------------------------------ATCACAGACCC-C-G-------------------AAAATATTTG-----AATGGGCTTAACCAAA-GACATTAG------AATAACAAGATGCGTAACGC-CATACGATTTTTTTGCACACGATTTTTTCGTGGTGGCTTTT--CAAGTGGCTCCAGGCTCTCTCGAAATTTTGTTCAAAAGCCAGTGAGCGG--------AGAGC---------------------------------------T------------
droEug1 scf7180000409471:653043-653123 + GTGTGTGCTACCAAAGAAAC--------CGATTCTTTAGATATAT-C-T-------------------AGAC----TATATAGTATAGAT-CCATCATG-GCTACCGA------AACAACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301231:39579-39720 + TC--------------------------------AGCAAATCAAG-C-A-------------------AAGCTA-CTACACCA---------TACCGAA-GACATTAG------AATATGAAGATAAATAACGC-CATACGATTTTTTTGCACACGATTTTTTGGTGTTGGCTCTA--GAGCTGGCTCCAGGTTCTCT--------TGCTCAAAAGCCAGAGA---------------------------------------------------------------------
droTak1 scf7180000414193:9993-10164 + TC-----------------------------------------------------------------------------------------TAAGCAAA-GACATTAG------AATATGAAGATGGATAACGT-CATACGATTTTTTTGCACACAAAATTTTGGTGCTGGCTCTA--GAGCTGGCTCCAGGCTCTCTT--------GCCCAAAAGCCAGCGAG-AGAGCGCCCTAGAGCCAACCGATCTCTTTTACGCATACAGCGACATCCGACGACT------------
droEle1 scf7180000490993:1750084-1750174 - GGGTGTGCTAAAAAAGAAACAGCGCGACCAATTCTTCAGATATCC-C-A-------------------AGACTATATAT--AAAATAGAT-CAACCATG-GCGACTGA------AACTACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000770903:19490-19623 + TGTCTTAC-------------------------------------------------------------------------------GGTTGCAGCAAAGACCAATACA-----AACTCTAAGATGCGTAACGC-CATACGATTTTTTTCCACACGAATTTTTTGTGCTGGCTTTT--CAACTGGCTTTTCGCTCTCT---------GACCAAAGGCCAGCGAG-AG--------AGCG-----------------------------------------------------
droFic1 scf7180000453824:195729-195816 - GCGTGTGCTAAAAAGGAAACAGCGTGACCAATTCTTCAGATATCC-C-A--------------------GTA--TATAT--ATTAAAGAT-CAACCATG-GCTACCGA------AACCACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000301605:712-900 - AGATATAATGCGGAAGAAATGG-------------TCGAATATATCC-T-------------------AAAATAGGTGCCCAAAATGGGTAGAGCCAAA-GACAATAG------AGTTATAAGATAGGTAACGC-CATACGATTTTTTTGCACACGATTTTTTCGTGCTGGCTTTT--GAACTGGCTCCAGGCTCTCTTAAA-TGTTGTTCAAAAGCCAGCGAAGAG--------AGCGC---------------------------------------T------------
dp5 XL_group3a:1956137-1956277 - ACACAT------------------------------------------------------------------------------------TTGGTCAAA-GACAATACAAATAC-ATAGTAAGATGAGTAGCGC-CATACAAATTTTTTGTACTTGATTTTTTCTGCCTGGCTTCA--GAGCTGGCTCCAGGCTTTCTTAAAATTTTGTTCAA-AGCCAAAGCG-AG--------AGCGC----------------------------------------------------
droPer2 scaffold_53:268931-269084 + AGGTA--------------------------------------------------------------------------------------GAAGCAAA-AACAATATAAATACAATAGGAAGATGAGTAACGCCCACACATTTCAATGATACATGACTTTAGCGGCGTGGCTTTT-AAAAGTGGCTCCAGGCTCTCTTCAAATTTTGTTGAAGAGCGGC--AGCGG--------ACGAC---------------------------------------TCAGATTTGAA-T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGTTGTGCTGAAAGAGAAACGGCGTCATCAATTCATCAGATATAC-C-A-------------------AAAGTATCTATACCATATAGATCCAACCAAA-GACACTAG------AACAACAAGTTGCGTAACGC-CATACTTTTTTTTGGCACATGATTTTTTCGGCGTGGCTCTA--GA-GTGGCACCAGGCTCTCTTGAATTTTTGTTAAAGAGCGAGAGAGCGG--------AGAACTAATTGAATTATTTTGGGTGGGAAGAGAAGTGCGCCAACT--TTTTTGTTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................G------AACAACAAGTTGCGTAACGC-CATACT.......................................................................................................................................................2713.00300000001020000000
..............................................................................................................................................TTTTTTGGCACATGATTTTTTCGGCGT...........................................................................................................................2732.33700010011121000000
.....................................................................................................................AACAAGTTGCGTAACGC-CA...........................................................................................................................................................1922.00400002000002000000
.....................................................................................................................AACAAGTTGCGTAACGC-CATACTT......................................................................................................................................................2412.00200001000001000000
...........................................................................................................G------AACAACAAGTTGCGTAACGC-CATA.........................................................................................................................................................2512.00200000001010000000
..........AAAGAGAAACGGCGTCATCA......................................................................................................................................................................................................................................................................2011.00100000000010000000
...................................................................................................................................................................................................................AAGAGCGAGAGAGCGG--------AGAACTAA.................................................2411.00100000000000010000
...................................................................................................................................................................................................TCTTGAATTTTTGTTAAAGAGCGAGAGA.....................................................................2811.00100000000100000000
.................AACGGCGTCATCAATTCATCAGATA..........................................................................................................................................................................................................................................................2511.00100000000100000000
...................................................................................................................................................................................................................................................TTGAATTATTTTGGGTGGGAAGAGA........................2511.00100000001000000000
....................................................................................................................................................................GGCGTGGCTCTA--GA-GTGGCACCA......................................................................................................2311.00101000000000000000
.............................................................................................................................................................................................................................................AACTAATTGAATTATTTTGGGTGGGA.............................2611.00100000001000000000
.............................................................................................................................................................................................................TTGTTAAAGAGCGAGAGAGCGG--------AG.......................................................2411.00100000000001000000
........................................................................................................................................................................TGGCTCTA--GA-GTGGCACCAGGCTCTC...............................................................................................2611.00100000000100000000
..............................................................................................................................................................................................................................................ACTAATTGAATTATTTTGGGTGGGAAGA..........................2811.00100000001000000000
...........................................................................................................................................................................................................TTTTGTTAAAGAGCGAGAGAGCGG--------A........................................................2511.00100000010000000000
........................................................................................................................AAGTTGCGTAACGC-CATA.........................................................................................................................................................1821.00200000000002000000
................................................................................................................................................TTTTGGCACATGATTTTTTCGGCGT...........................................................................................................................2531.00300010000011000000
.................................................................................................................................................TTTGGCACATGATTTTTTCGGCGTGG.........................................................................................................................2631.00300000011100000000
........................................................................................................................................................................................................................................................TTATTTTGGGTGGGAAGAGAA.......................2111.00100000000000100000
...........................................................................................................G------AACAACAAGTTGCGTAACGC-CA...........................................................................................................................................................2311.00100000000001000000
.................................................................................................................................................................................................................................GG--------AGAACTAATTGAATTATTTTGGGTG................................2711.00100000001000000000
...........................................................................................................G------AACAACAAGTTGCGTAACGC-CATAC........................................................................................................................................................2611.00100000000010000000
.................................................................................................................................................TTTGGCACATGATTTTTTCGGCGT...........................................................................................................................2440.75300000000210000000
...................................................................................................................................................TGGCACATGATTTTTTCGGCGTGG.........................................................................................................................2430.67200000010100000000
.................................................................................................................................................TTTGGCACATGATTTTTTCGGCGTG..........................................................................................................................2530.67200000011000000000
...............................................................................................................................................TTTTTGGCACATGATTTTTTCGGC.............................................................................................................................2430.67200000011000000000
..............................................................................................................................................TTTTTTGGCACATGATTTTTTCGGC.............................................................................................................................2530.67200000020000000000
..................................................................................................................................................TTGGCACATGATTTTTTCGGCGTGG.........................................................................................................................2530.67200000010010000000
.....................................................................................................................AACAAGTTGCGTAACGC-CATAC........................................................................................................................................................2220.50100000000001000000
......................................................................................................................ACAAGTTGCGTAACGC-CA...........................................................................................................................................................1820.50100000000001000000
........................................................................................................................AAGTTGCGTAACGC-CA...........................................................................................................................................................1620.50100000000001000000
..................................................................................................................................................TTGGCACATGATTTTTTCGGCGTGGCTC......................................................................................................................2830.33100000001000000000
..................................................................................................................................................TTGGCACATGATTTTTTCGGCGTGGC........................................................................................................................2630.33100000000010000000
........................................................................................................................................................CATGATTTTTTCGGCGTGGCTCTA--GA-G..............................................................................................................2730.33100000001000000000
..........................................................................................................................................................TGATTTTTTCGGCGTGGCTCTA--G.................................................................................................................2330.33100000000100000000
..........................................................................................................................................................TGATTTTTTCGGCGTGGCTCTA--GA-A..............................................................................................................2530.33100000001000000000
...................................................................................................................................................TGGCACATGATTTTTTCGGCGTGGC........................................................................................................................2530.33100000010000000000
...............................................................................................................................................TTTTTGGCACATGATTTTTTCGGCG............................................................................................................................2530.33100000000010000000
................................................................................................................................................TTTTGGCACATGATTTTTTCGGCG............................................................................................................................2430.33100010000000000000
...................................................................................................................................................TGGCACATGATTTTTTCGGCGTGGCT.......................................................................................................................2630.33100010000000000000
..................................................................................................................................................TTGGCACATGATTTTTTCGGCGTGGCT.......................................................................................................................2730.33100000000100000000
.................................................................................................................................................TTTGGCACATGATTTTTTCGGCGTGGCT.......................................................................................................................2830.33100000001000000000
........................................................................................................................................................CATGATTTTTTCGGCGTGGCTCTA--GA-...............................................................................................................2630.33100000010000000000
........................................................................................................................................................CATGATTTTTTCGGCGTGGCT.......................................................................................................................2130.33100000000010000000
.....................................................................................................................................................GCACATGATTTTTTCGGCGT...........................................................................................................................2040.25100000000001000000
.....................................................................................................................................................GCACATGATTTTTTCGGC.............................................................................................................................1840.25101000000000000000
..................................................................................................................................................TTGGCACATGATTTTTTCGG..............................................................................................................................2040.25100000010000000000
.................................................................................................................................................TTTGGCACATGATTTTTTCGGC.............................................................................................................................2240.25100000001000000000
........................................................................................................................................................CATGATTTTTTCGGCGTGGCTT......................................................................................................................2240.25110000000000000000
...................................................................................................................................................TGGCACATGATTTTTTCGGCGT...........................................................................................................................2240.25100000000001000000
..............................................................................................................................................................TTTTTCGGCGTGGCTCTA--GA-G..............................................................................................................21200.20410100000020000000
..........................................................................................................................................................TGATTTTTTCGGCGTGGCTCCT--T.................................................................................................................2390.11100000000100000000
...............................................................................................................................................................TTTTCGGCGTGGCTCTA--GA-G..............................................................................................................20200.10200000001100000000
.............................................................................................................................................................TTTTTTCGGCGTGGCTC......................................................................................................................17200.10200000020000000000
...........................................................................................CAACCAAA-GACACTAG------AA................................................................................................................................................................................18140.07100000000001000000
.............................................................................................................................................................TTTTTTCGGCGTGGCTCTA--GA-...............................................................................................................21200.05110000000000000000
...........................................................................................................................................................GATTTTTTCGGCGTGGC........................................................................................................................17200.05100000000001000000
...............................................................................................................................................................TTTTCGGCGTGGCTCTA--GA-...............................................................................................................19200.05100000000001000000
.................................................................................................................................................................TTCGGCGTGGCTCTA--..................................................................................................................15200.05100000001000000000
.................................................................................................................................................................TTCGGCGTGGCTCTA--GA-G..............................................................................................................18200.05110000000000000000
............................................................................................................................................................ATTTTTTCGGCGTGGC........................................................................................................................16200.05100000000001000000
............................................................................................................................................................ATTTTTTCGGCGTGGCTA......................................................................................................................18200.05100000000001000000
....................................................................................................................................................................GGCGTGGCTCTA--GA-G..............................................................................................................15200.05100000000001000000
.............................................................................................................................................................TTTTTTCGGCGTGGCTCTA--GA-G..............................................................................................................22200.05100000000100000000
droSec2
GGTTGTGCTGAAAGAGAAACGGCGTCATCAATACATCAGATATAG-C-A-------------------AAAGTATCTATACCATATAGATCCAACCAAA-GACACTAG------AACAACAAGTTGCGTAACGC-CATACTTTTTTTTGGCACATGATTTTTTCGGCGTGGCTCTACTAGGGTGGCACCAGGCTCTCTTGAATTTTTGTTAAAGAGCGAAAGAGCGG--------AGAACAAATTGAATTATTTTGGGTGGGAAGAGAAGTGCGCAAACT--TATTTGTTTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................TTTTGGGTGGGAAGAGAAGT.....................2011.0010100
.......................................................................................................................................................................................................................................................ATTATTTTGGGTGGGAAGAGAAGT.....................2411.0010100
..TTGTGCTGAAAGAGAAACGGC.............................................................................................................................................................................................................................................................................2121.0020020
.............................................................................................................................................................................................................................................................TTGGGTGGGAAGAGAAGTGCGC.................2211.0010100
........................................................................................................CTAG------AACAACAAGTTGCGTAAC................................................................................................................................................................2211.0010001
....GTGCTGAAAGAGAAACGGCGT...........................................................................................................................................................................................................................................................................2121.0020200
...................................................................................................................................................TGGCACATGATTTTTTCGGCGTGGC........................................................................................................................2520.5010010
..................................................................................................................................................TTGGCACATGATTTTTTCGGCGTGG.........................................................................................................................2520.5011000
...TGTGCTGAAAGAGAAACGG..............................................................................................................................................................................................................................................................................1920.5010010
..............................................................................................................................................TTTTTTGGCACATGATTTTTTCGGCG............................................................................................................................2630.3311000
................................................................................................................................................TTTTGGCACATGATTTTTTCGGCGT...........................................................................................................................2530.3311000
..................................................................................................................................................TTGGCACATGATTTTTTCGGTCA...........................................................................................................................2360.1711000
dm3
GA---------------CACAGGCTCATCAATCAATCAAACAATC-A-ATAG-------GGAAAATTTAGAAAAAAAAG--AAGAAA-ATCTAACCAAA-GACCCTAG------AATAACAAGATGCGTAACGC-CATACGATTTTTTGGCACACGATTTTTTCGCCGTGGCTCTA--GAGGTGGCTCCAGGCTCTCTCGAATTTTTGTTAGAGAGCGAGAGAGCGG--------AGAGC----------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................TAACAAGATGCGTAACGC-CATACGAT.....................................................................................................................................................2620117.0523410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000000000000000000000000000000000000232300000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TAACAAGATGCGTAACGC-CATACGATT....................................................................................................................................................272094.651893002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005960000000000000000000000000000000000000000000000000000000000000000012950000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TAACAAGATGCGTAACGC-CATACG.......................................................................................................................................................242049.109820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000056100309000000000000000000000000000000000000000000000001120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TTTTTTCGCCGTGGCTCTA--GAGGTGGC..........................................................................................................272039.20784000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000077900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
....................................................................................................................TAACAAGATGCGTAACGC-CATACGA......................................................................................................................................................252020.9041800000000000000000000000000000000000000000005000000000000000000000000000000000000000330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018000000000000000000000000000000000000000000000362000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TTGTTAGAGAGCGAGAGAG....................................................................192019.05381000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000038100000000000000000000000000
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........................................................................................................................................................................TGGCTCTA--GAGGTGGCTCC.......................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................ACCCTAG------AATAACAAGATGCGT...................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGGCTCTA--GAGGTGGCTCCAGG....................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000
...................................................................................................................................................................CGCCGTGGCTCTA--GAGGTGGC..........................................................................................................21200.1020000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................GCACACGATTTTTTCGCCGTGG.........................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
............................................................................................................................................................................................................TTTGTTAGAGAGCGAGAGAGCGG--------AT.......................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TTTGGCACACGATTTTTTCGC..............................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................GAATTTTTGTTAGAGAGCGAGAGAGC...................................................................26200.1020000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TTTGGCACACGATTTTTTCGCCG............................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................GCCGTGGCTCTA--GAGGTGGCT.........................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
....................................................................................................................................................................GCCGTGGCTCTA--GAGGTGGC..........................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TTTTTCGCCGTGGCTCTA--GAGGTGGCT.........................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................GAGAGCGAGAGAGCGG--------AGA......................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
..............................................................................................................................................................................................GGCTCTCTCGAATTTTTGTTA.................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...................................................................................................................................................................CGCCGTGGCTCTA--GAGGTGGCTCC.......................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000
.................................................................................................................................................................................................................TAGAGAGCGAGAGAGCGG--------AGAG.....................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AGGCTCTCTCGAATTTTTGTT..................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TAACAAGATGCGTAACGC-CATACGG......................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000
..........................................................................................................................................ACGATTTTTTGGCACACGAT......................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................GCTCTCTCGAATTTTTGTTAG................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCCAGGCTCTCTCGAATTTTTGTTA.................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................TCTA--GAGGTGGCTCCAGGCTCT................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................CTCTA--GAGGTGGCTCCAT.....................................................................................................18200.1020000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GAGAGCGAGAGAGCGG--------AGAGC----------------------------------------------------21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................GATTTTTTCGCCGTGGCTCTA--GAGG..............................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................................................................TTTTCGCCGTGGCTCTA--GAG...............................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TTTTGTTAGAGAGCGAGAGAGCGG--------AA.......................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TTTTTGGCACACGATTTTTTCGC..............................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
..............................................................................................................................................................................................................TGTTAGAGAGCGAGAGAGCGG--------AG.......................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................................................................................................TACGATTTTTTGGCACACGATTTTTTC................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................ATTTTTTGGCACACGATTTTTTCGCCGT...........................................................................................................................28200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................AAA-GACCCTAG------AATAACAAGATGCG....................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................GAATTTTTGTTAGAGAGCGAGAGA.....................................................................24200.1020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TTCGCCGTGGCTCTA--GAGGTGGCTCCA......................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TTCGCCGTGGCTCTA--GAGGTGGT..........................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TCGAATTTTTGTTAGAGA.............................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CGCCGTGGCTCTA--GAGGT.............................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
..............................................................................................................................................................................................................TGTTAGAGAGCGAGAGAGCGG--------AA.......................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TTTTGTTAGAGAGCGAGAGAGCGG--------AGA......................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ATGCGTAACGC-CATACGAT.....................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................ATTTTTGTTAGAGAGCGAGAGAG....................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............................................................................................................................................TTTTTTGGCACACGATTTTTTCGC..............................................................................................................................24200.1020000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TA--GAGGTGGCTCCAGGCTCTC...............................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TTTTCGCCGTGGCTCTA--GAGGT.............................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................TTTTGGCACACGATTTTTTCGCCGTG..........................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................CTCCAGGCTCTCTCGAATTTTTGTTA.................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................AGAGAGCGAGAGAGCGG--------AGA......................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................GATTTTTTCGCCGTGGCTC......................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGCTGTGCTTGGAAAGTTTA-AT-----ACATT-------------CAGAAGTTTGGTT--------CAGAG----TATATA---A-GGCTATACTAAA-GACACTAA------AATAATAAGATGTGTAAAGC-CATACGATTTTTTTGCACATGATTTTTTCGTGCTGGCTCTA--AAGTTGGCTCCAGGCTCTCTCGAATTTTTGTTTAAAAGCCAGAGAG--------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................GCTCCAGGCTCTCTCGAATTTTTGTT..................................................................................26200.1530000003
droYak3
TT--------------------------------ATCACAGACCC-C-G-------------------AAAATATTTG-----AATGGGCTTAACCAAA-GACATTAG------AATAACAAGATGCGTAACGC-CATACGATTTTTTTGCACACGATTTTTTCGTGGTGGCTTTT--CAAGTGGCTCCAGGCTCTCTCGAAATTTTGTTCAAAAGCCAGTGAGCGG--------AGAGC---------------------------------------T------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................GGCTTTT--CAAGTGGCTCCAGGCTCT................................................................................................25200.551105000000006
....................................................................................................................TAACAAGATGCGTAACGC-CATACGA......................................................................................................................................................25200.5010010000000000
..............................................................................................................................................................................TT--CAAGTGGCTCCAGGCTCTCTCGA...........................................................................................25200.35707000000000
....................................................................................................................TAACAAGATGCGTAACGC-CATACGATT....................................................................................................................................................27200.35707000000000
..............................................................................................................................................................................TT--CAAGTGGCTCCAGGCTCTCTCGAAA.........................................................................................27200.25505000000000
.........................................................................................................................................TACGATTTTTTTGCACACGATTTTTT.................................................................................................................................26200.25505000000000
..............................................................................................................................................................................TT--CAAGTGGCTCCAGGCTCTCTC.............................................................................................23200.20404000000000
.........................................................................................................................................TACGATTTTTTTGCACACGATTTTT..................................................................................................................................25200.20404000000000
...........................................................................................................................................CGATTTTTTTGCACACGATTTTTTCG...............................................................................................................................26200.15303000000000
.........................................................................................................................................................................GGCTTTT--CAAGTGGCTCCAGGCTC.................................................................................................24200.10202000000000
..........................................................................................................................................................................................TCCAGGCTCTCTCGAAATTTTGTTCA................................................................................26200.10202000000000
............................................................................................................................................................................................................TTTGTTCAAAAGCCAGTGAGCGG--------AGA......................................................26200.10202000000000
.........................................................................................................................................TACGATTTTTTTGCACACGATTTTTC.................................................................................................................................26200.10200200000000
...............................................................................................................................................................................T--CAAGTGGCTCCAGGCTCTCTCGAAA.........................................................................................26200.10202000000000
.........................................................................................................TAG------AATAACAAGATGCGTAACGC-T............................................................................................................................................................24200.10202000000000
.................................................................................................................................................................TTCGTGGTGGCTTTT--CAAGTGGCTC........................................................................................................25200.05100100000000
............................................................................................................................................................................................................TTTGTTCAAAAGCCAGTGAGCGG--------.........................................................23200.05101000000000
..............................................................................................................................................................................TT--CAAGTGGCTCCAGGCTCTCT..............................................................................................22200.05101000000000
...................................................................................................................ATAACAAGATGCGTAACGC-CATACGAT.....................................................................................................................................................27200.05101000000000
...........................................................................................................................................................................................................TTTTGTTCAAAAGCCAGTGAGCGG--------.........................................................24200.05100000010000
..............................................................................................................................................................................TT--CAAGTGGCTCCAGGCTCTCTCGAA..........................................................................................26200.05101000000000
...........................................................................................................G------AATAACAAGATGCGTAACGC-CA...........................................................................................................................................................23200.05100000010000
...........................................................................................................................................................................................................TTTTGTTCAAAAGCCAGTGAGCGG--------AG.......................................................26200.05101000000000
.........................................................................................................TAG------AATAACAAGATGCGTAACGC-.............................................................................................................................................................23200.05100100000000
.................................................................................................................................................................TTCGTGGTGGCTTTT--CAAGTGGCTCC.......................................................................................................26200.05101000000000
..............................................................................................................................................................................................................TGTTCAAAAGCCAGTGAGCGG--------AGAG.....................................................25200.05101000000000
................................................................................................................................................................................................................TTCAAAAGCCAGTGAGCGG--------AGAGC---------------------------------------.............24200.05100100000000
.........................................................................................................................................TACGATTTTTTTGCACACGATTTC...................................................................................................................................24200.05100100000000
........................................................................................................................................................................................GCTCCAGGCTCTCTCGAAATTTTGTTC.................................................................................27200.05101000000000
...............................................................................................................................................................................T--CAAGTGGCTCCAGGCTCTCTCGA...........................................................................................24200.05101000000000
..............................................................................................................................................TTTTTTTGCACACGATTTTTTC................................................................................................................................22200.05101000000000
........................................................................................................................................................CACGATTTTTTCGTGGTGGCTTTT--C.................................................................................................................25200.05100100000000
............................................................................................................................................GATTTTTTTGCACACGATTTTTTC................................................................................................................................24200.05101000000000
........................................................................................................................................................................TGGCTTTT--CAAGTGGCTCCAGGCTCT................................................................................................26200.05101000000000
...............................................................................................................................................................................T--CAAGTGGCTCCAGGCTCTCTCGAA..........................................................................................25200.05101000000000
droEug1
GTGTGTGCTACCAAAGAAAC--------CGATTCTTTAGATATAT-C-T-------------------AGAC----TATATAGTATAGAT-CCATCATG-GCTACCGA------AACAACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TC--------------------------------AGCAAATCAAG-C-A-------------------AAGCTA-CTACACCA---------TACCGAA-GACATTAG------AATATGAAGATAAATAACGC-CATACGATTTTTTTGCACACGATTTTTTGGTGTTGGCTCTA--GAGCTGGCTCCAGGTTCTCT--------TGCTCAAAAGCCAGAGA---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TC-----------------------------------------------------------------------------------------TAAGCAAA-GACATTAG------AATATGAAGATGGATAACGT-CATACGATTTTTTTGCACACAAAATTTTGGTGCTGGCTCTA--GAGCTGGCTCCAGGCTCTCTT--------GCCCAAAAGCCAGCGAG-AGAGCGCCCTAGAGCCAACCGATCTCTTTTACGCATACAGCGACATCCGACGACT------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGGTGTGCTAAAAAAGAAACAGCGCGACCAATTCTTCAGATATCC-C-A-------------------AGACTATATAT--AAAATAGAT-CAACCATG-GCGACTGA------AACTACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGTCTTAC-------------------------------------------------------------------------------GGTTGCAGCAAAGACCAATACA-----AACTCTAAGATGCGTAACGC-CATACGATTTTTTTCCACACGAATTTTTTGTGCTGGCTTTT--CAACTGGCTTTTCGCTCTCT---------GACCAAAGGCCAGCGAG-AG--------AGCG-----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCGTGTGCTAAAAAGGAAACAGCGTGACCAATTCTTCAGATATCC-C-A--------------------GTA--TATAT--ATTAAAGAT-CAACCATG-GCTACCGA------AACCACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGATATAATGCGGAAGAAATGG-------------TCGAATATATCC-T-------------------AAAATAGGTGCCCAAAATGGGTAGAGCCAAA-GACAATAG------AGTTATAAGATAGGTAACGC-CATACGATTTTTTTGCACACGATTTTTTCGTGCTGGCTTTT--GAACTGGCTCCAGGCTCTCTTAAA-TGTTGTTCAAAAGCCAGCGAAGAG--------AGCGC---------------------------------------T------------SizeHit CountTotal NormTotal
No Reads
dp5
ACACAT------------------------------------------------------------------------------------TTGGTCAAA-GACAATACAAATAC-ATAGTAAGATGAGTAGCGC-CATACAAATTTTTTGTACTTGATTTTTTCTGCCTGGCTTCA--GAGCTGGCTCCAGGCTTTCTTAAAATTTTGTTCAA-AGCCAAAGCG-AG--------AGCGC----------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AGGTA--------------------------------------------------------------------------------------GAAGCAAA-AACAATATAAATACAATAGGAAGATGAGTAACGCCCACACATTTCAATGATACATGACTTTAGCGGCGTGGCTTTT-AAAAGTGGCTCCAGGCTCTCTTCAAATTTTGTTGAAGAGCGGC--AGCGG--------ACGAC---------------------------------------TCAGATTTGAA-TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 04:02 PM