ID:

dsi_11469

 Coordinate:

2r:19944163-19944312 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.4 -22.4 -22.3 -22.3

Flybase annnotation

exon [2r_19943497_19944162_-]; CDS [2r_19943497_19944162_-]; intron [2r_19944163_19945608_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGTGCAGTGCGGTGCGGTGCCAGTGACGTGAACTTGGGAGCTCGCTTGCATGATTGCGAGCGGCAGGCGGCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGTGCGCTAATTTATGCACGCACGCTCGGCGACGGGCGAAAGCGAATGCAACTGACCGAGAATCGTGTATTGTGAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACC
***************************************************************************************************.....((.(((....((.((...........(((((((.((((((....))))))...)))..))))....)).))..))).))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 O002
Head
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
........................................................................................................................................................................................ATTGTGACTCTTGAAGATGCC............................................. 21 3 1 5.00 5 5 0 0 0 0 0 0 0
..................................................................................................................................................................TGCAACTGACCGAGAATCGTG................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0
...................................................................................................TGAGTCAAGGTGGCTTCCGTGCGC............................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................AACTTGGGAGCTCGCTTGCA....................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0
......................................................................................................................................................GGCGAAAGCGAATGCAACTG................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0
......................AGTGACGTGGACTTGGGAGCT............................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................AATCTTGCAGATGGCAGCCCG....................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................CGGCCAGGTCGTTGGCCTTGGC................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................CCTGAACTTGGGAGC................................................................................................................................................................................................................ 15 1 7 0.86 6 6 0 0 0 0 0 0 0
..........................................TCGATTGGATGATTGCGACC............................................................................................................................................................................................ 20 3 8 0.13 1 0 0 0 1 0 0 0 0
....................................GGGAGATCGCTTGCA....................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 1 0
...................GCCGGTGACGAGAACTT...................................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 0 1
.............................................................................................................................ATTTATGGAGGCACGCT............................................................................................................ 17 2 15 0.07 1 0 0 0 0 1 0 0 0
.............................................................CGGCCGGCGGCCAGGTCGCC......................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 1 0
.....................................GGAGATCGCTTGCAT...................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTCACGTCACGCCACGCCACGGTCACTGCACTTGAACCCTCGAGCGAACGTACTAACGCTCGCCGTCCGCCGGTCCAGCAACCGGAACCGCCGTCCGTAACTCAGTTCCACCGAAGGCACGCGATTAAATACGTGCGTGCGAGCCGCTGCCCGCTTTCGCTTACGTTGACTGGCTCTTAGCACATAACACTTAGAACGTCTACCGTCGGGCTACGACGCCGTGCCGCTGTGGCCGCTGACCCACCCGTGG
*******************************************************************.....((.(((....((.((...........(((((((.((((((....))))))...)))..))))....)).))..))).))*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
GTCACGTCACGCCACGCCA....................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CTACCGTCGGGCTACGACGCCG............................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATGTCGGGCTACGACGCCGTGCC......................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................TTCCACCGAAGGCACGCGATTAAAT........................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................CACTGCACTTGAACCCTC................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TTACGTTGACTGGCTCTTAGCACAT................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................CCGAAGGCACGCGATTAAATA....................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................CATAGCACTTAGAAAGCCTACC.............................................. 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0
..................................................................GCGGCGATCCAGCAACCG...................................................................................................................................................................... 18 3 20 0.15 3 0 0 1 0 0 0 0 2 0
...............................................................................................................................................................................................................................CCGCTGTGGTCGCTGA........... 16 1 7 0.14 1 0 1 0 0 0 0 0 0 0
..................................................................CCGACGGTCGAGCTACCGGAA................................................................................................................................................................... 21 3 7 0.14 1 0 1 0 0 0 0 0 0 0
.....................GTCCCTGCACTTGATCCCG.................................................................................................................................................................................................................. 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................AGCTGCTGCCCGCTTGCGG.......................................................................................... 19 3 17 0.12 2 0 0 0 0 0 0 2 0 0
..........................................................................................................................................GCGAACCGCTGCCCCCT............................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 0 0 1
...................................................................CGCCAGGCCAGCAACCG...................................................................................................................................................................... 17 2 12 0.08 1 0 1 0 0 0 0 0 0 0
.................................................................TTCGCCAGGCCAGCAACCG...................................................................................................................................................................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................GTCCGAGTCGCTGCCCG................................................................................................. 17 2 16 0.06 1 0 1 0 0 0 0 0 0 0
................................................................GCGAGCCGGTCCAGCAACCG...................................................................................................................................................................... 20 3 19 0.05 1 0 1 0 0 0 0 0 0 0
........................TCTGGACTTGAACCCTGGA............................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0
.......................................TCGCGCGCACGTACTA................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:19944113-19944362 - dsi_11469 CAGTGCAG----TGCGGTG-CGGTGCCAGTGACGTGAACTTGGG-AGCT-CGC---------------------TTGCATGATT---------GCGAGCGGC-------------------------------AGGCG-GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------GCG-----------------------------CTAATTTATGCACGCACGCTC--------------GGCGACGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TGTA---------TTG--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACC
droSec2 scaffold_9:2714496-2714745 - CAGTGCAG----TGCGGTG-CGGTGCCAGTGACGTGAACTTGGG-AGCT-CGC---------------------TTGCATGATT---------GCGAGCGGC-------------------------------AGGCG-GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------GCG-----------------------------CTAATTTATGCACGCACGCTC--------------GGCGGCGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TGTA---------TTG--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACC
dm3 chr2R:19433465-19433714 - CAGTGCGG----TGCGGTG-CGGTGATAGTGACGTGAACTTGGG-AGCT-CGC---------------------TTGCATGATT---------GCGAGCGGC-------------------------------AGGCG-GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------GCG-----------------------------CTAATTTATGCACGCACGCTC--------------GGCGGCGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TGTA---------TTG--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACC
droEre2 scaffold_4845:20796953-20797195 - der_1204 G-----------AGCAGTG-CAGTGCCAGTGACGTGAACTTGGG-AGCT-CGC---------------------TTGCATGATT---------GAGAGCGGC-------------------------------AGGCA-GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------CCG-----------------------------CTAATTTATGCACGCACGCTC--------------GGCGGCGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TGAA---------TTG--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACC
droYak3 2R:19394191-19394437 - CAG--------------TGTCAGTGCCAGTGACGTGAACTTGGG-AGCT-CGC---------------------TTGCATGATT---------GCGAGCGGC-------------------------------AGGCA-GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------CCGC-----------------------GTCCGCTAATTTATGCACGCACGCTC--------------GCCGGCGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TGAA---------TTG--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACC
droEug1 scf7180000409474:221292-221521 + A----------------TG-CAGTGCAAGTGACGTGAACTTGGGGAGCT-CGC---------------------TTGCATGATT---------GCGAGCGGC-------------------------------A-----GCCAGGCCGTTGGCCTTGGCGACCGGCATTGAGTCAAGGTGGCTTCCGT------------------------------TCG-----------------------------CTAATTTATGCACGCACGCTC--------------GC---CGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA-----------------------------------------TTG------------------------------------------------------TG-----------ATC--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCATGGCGACACCGGCGACTGGGTGGGCACC
droBia1 scf7180000301754:3880547-3880805 - CCTTGCTGCTCGCTCGGCG-CAGTGCAGGTGACGTGAACTTGGGGAGCG-CGC---------------------TTGCATGATT---------GCGAGCGGC-------------------------------G-----GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------CCG-----------------------------CTAATTTATGCACGCACGCTC--------------GCCGGCGA-----------G-CG-AGAGCAAG-------------AGC--------------AA-CTGCAGCTGACTGACCGGGAA-----------------------------------------CTG------------------------------------------------------TG-----------CTC--T-GATTCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACC
droTak1 scf7180000415306:275853-276105 + G---------------CTG-CAGTGCATGTGACGTGAACTTGGGGAGCT-CGC---------------------CTGCATGATT---------GCGAGCG---------------------------------------GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------TGG-----------------------------CTAATTTATGCACGCACGCTC--------------CCCGGCGA-----------G-CG-AAAGC-------------------AT----------CGAATGTGCAGCTGACTGACCGAGAA----------------------------AACGTTGTTAATC--C------------------------------------------------------TAAA---------TTC--T-CAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACC
droEle1 scf7180000491201:1368544-1368785 + CCGAGCGG----TGCGGTG-CAGTGCAGGTGACGTGAACTTGGGGAGCT-CGC---------------------TTGCATGATT---------GCGAACGTC-------------------------------A-----GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------TCG-----------------------------TTAATTTATGCACGCACGCTC--------------GC---CGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------TTGACCGAGAA-----------------------------------------CTG------------------------------------------------------TG-----------ATC--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGGGATTGGGTGGGCACC
droRho1 scf7180000767155:21820-22046 - C--------------------AGTGCAGGTGACGTGAACTTGGGGAGCT-CGC---------------------TTGCATGATT---------GCGAGCGTC-------------------------------A-----GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------TCG-----------------------------TTAATTTATGCACGCACGCTC--------------GC---CGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA-----------------------------------------TTG------------------------------------------------------TG-----------CTC--T-GAATCTTGCAGATGGAAGCCCGATGCTGCGGCATGGCGACACCGGGGATTGGGTGGGCACC
droFic1 scf7180000453809:794785-795052 + G----------------TG-CAGTGCAAGTGACGTGAACTTGGGGAGCT-CGC---------------------TTGCATGATT---------GCGAGCGAC------------------------------GCGTCG-CCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------TCG-----------------------------CTAATTTATGCACGCACGCTTGCTCGCTCACTCGC-TCGCCGG-----------G-CG-AAAGCGAATCCGAATCCGAAATGC--------------AA-------CTGACTGACCGAGAA-----------------------------------------TCG------------------------------------------------------TG-----------TTC--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGATTGGGTGGGCACC
droKik1 scf7180000302470:2345685-2345951 + G---------------ATG-CAGTGGAAGTGACGTGAACTTGGGAAGCT-CGC-T------------CGCTTGCCTGCATGATT---------GCGAGCGGC----------------GT-------------CGTTG-GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------TCG-----------------------------TTAATTTATGCACGCACGCTC--------------TCCGCCGG-----------TGCGCCAAGTGAA-------------TGCATATTTTCCCCACGAA-----------CTAACTGAGAC-----------------------------------------TTC------------------------------------------------------TG-----------TTCTCTCTTTTTTTGCAGATGGCAGCCCGATGCTGAGGCATGGCGATACCGGCGATTGGGTGGGCACC
droAna3 scaffold_13266:8065018-8065346 - A---------------ATG-CAGTGGAAGTGACGTGAACTTGGGCAGCC-CGC---------------------TTACATGATTTTAGCGTTCGCGAGCGGC-------------------------------AGGCA-GTCGGGTCGTTGGCCTTGG-GGAAGGCATTGAGTCAAGGTGGCTTCCGTTCCGCTCCTCGCTACCCGCCGCCGATTCATTCG-----------------------------CTAATTTATGCACACGAGCAT--------------CC----CG-----------G-CG-AACGTGTC-------------TGC--------------AA-----------CTAACCAAGTGTTCTCCTTAGACTCGAATTAAAGTGCGAA----------TC--GTAATTAACATTCTTATTTAAATTCCATTACATTA----------------------------------------CTTTATTTCAGATGGCAGTCCAATGCTGCGTCATGGCGATACCGGTGATTGGGTGGGCACC
droBip1 scf7180000396759:755987-756348 + CG-----G----CCCGATG-CAGTGGAAGTGACGTGAACTTGGGCAGCC-CGC---------------------TTACATGATATT-GCGTTCACGAGCGTC-------------------------------A-----GTCGGGTCGTTGGCCTTGG-GGAAGGCATTGAGTCAAGGTGGCTTCCGATTTGCTCCTCGCC-----CCTCCGATTCACTCG-----------------------------CTAATTTATGCACACGAGCAT--------------CC----CG-----------G-CG-AACGTGTC-------------TGC--------------AA-----------CTAACCAAGTGTTCTCCTTAGAGTCAAATTAAAGTGGGAA----------TC--GCCATTAACATTGTAATTTAAATTCGCGTAGATTATTAAGCATACATGCATAATGTGCATTGATAGTCATT--T-AATTATTTCAGATGGCAGTCCAATGCTGCGTCATGGGGATACCGGCGATTGGGTGGGCACC
dp5 3:9569078-9569352 + G-----------TCCGCTG-CGTCGAGAACGCTGTGAACTTGGG-AGCT-G--CTGGCTGTGCTGGCTGATGGCTTGCATGATT---------CCGATT------C--CGTTTCGACTGCCGCCG--TCGCCG-----TGTCAGGTCGTTGGCATTGATGGTAGTCATTGAGTCAAGGTGGCTTCCGC---------CGCT-----CACACGATTTATTTA-----------------------------TCAATTTATACAT------TT--------------TATGGC-------------G-CG-A-----AA-------------TGC--------------AA-----------TT----GAGAA-----------------------------------------TTC------------------------------------------------------TGGA---------------CGTTTCTTGTAGATGGCAGCCCGATGCTGCGTCACGGCGACACCGGTGACTGGGTGGGCACC
droPer2 scaffold_4:4892534-4892808 + G-----------TCCGCTG-CGTCGAGAACGCTGTGAACTTGGG-AGCT-G--CTGGCTGTGCTGGCTGATGGCTTGCATGATT---------CCGATT------C--CGTTTCGACTGCCGCCG--TCGCCG-----TGTCAGGTCGTTGGCATTGATGGTAGTCATTGAGTCAAGGTGGCTTCCGC---------CGCT-----CACACGATTTATTTA-----------------------------TCAATTTATACAT------TT--------------TATGGC-------------G-CG-A-----AA-------------TGC--------------AA-----------TT----GAGAA-----------------------------------------TTC------------------------------------------------------TGGA---------------CGTTTCTTGTAGATGGCAGCCCGATGCTGCGTCACGGCGATACCGGTGACTGGGTGGGCACC
droWil2 scf2_1100000004954:2808033-2808157 - ---------------------------------GTGAACTTGAA-TGTT-TGC---------------------ATGCACA---------------------CGACGACGA--CGA-CTTTGTGAATTGAGAG-----TGTCGGGTCGTTGGCATTGGGTATAGTCATTCAGTCAAGGTGGCTTCCGC------------------------------CCGT----------------------------TTGACAAAAACACGCACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_10324:543787-544056 - dvi_747 ---------------------------AATGACGTGAACTTGGTGCACGGCGG---------------------CTGCCCATTT---------GCGAGCACGAATCGCCGT--CGT-CGTCGCAG--CCACTG-----CGTCAGGTCGTTGGCATTGAGCGTACTCGTTGAGTCAAGGTAGCTTCCGC---------CGC------------------TCA-----------------------------CACACTCACACACACACACAC----ACACACACGC-ACGCAGTGTATTTAGTTGG-------------------------CGC--------------AA-----------TT----AAGAA------------TTGAA----------------------T----------------------------------------------------------TAAA----TTG--TCGTTGCCTTTTTTGCAGATGGCAGCCCGATGTTGCGTCACGGGGACACCGGCGACTGGGTGGGCACC
droMoj3 scaffold_6496:2374927-2375060 - CG--------------TTG-CAATGGAAGTGACGTGAACTTGG--------------------------------TGCACGGCT---------GTCGGCTGT-----------CGG-CGTCGCAG--CCGCTG-----CGTCAGGTCGTTGGCATTGAGCGCCGCCGTTGAATCAAGGTAGCTTCCGC-------------------------------CG-----------------------------CTCACGCAAACACACACAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:8268299-8268578 - -----------------TG-CAATGGAAGTGACGTGAACTTGGT--GCA-TGG---------------------CTGCCCATTT---------GCGAGCACG-------------------------------AATCGCGTCAGGTCGTTGGCATTGAGTGTAGTCATTGAGTCAAGGTAGCTTCCGT---------CGCT-----CACACAACTTAGTCA-CAAAACACTCATACACATACAACATATGTTGATGTATTGATGTAT-CTC--------------AGT-GCAG-----------T-TT-TTGGCGAG-------------TGC--------------AT-----------TTAAG----AA------------TTGAA----------------------TATTG------------------------------------------------------TA-----------TTG--T-GCTCTTTGCAGATGGCAGCCCAATGCTGCGTCATGGCGATACTGGGGACTGGGTGGGCACC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAGTGCAG----TGCGGTG-CGGTGCCAGTGACGTGAACTTGGG-AGCT-CGC---------------------TTGCATGATT---------GCGAGCGGC-------------------------------AGGCG-GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------GCG-----------------------------CTAATTTATGCACGCACGCTC--------------GGCGACGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TGTA---------TTG--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TG...............................................................................2112.00220000000000000000
........................................................................................................................................................................TGAGTCAAGGTGGCTTCCGT------------------------------GCG-----------------------------C...........................................................................................................................................................................................................................................................................................................2411.00100000100000000000
....................................AACTTGGG-AGCT-CGC---------------------TTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
....................................................................................................................................................................................................................................................................................................G-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTG...........................................................................................................................................................................................2011.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCAGATGGCAGCCCG.......................................2111.00100000100000000000
........................................................................................................................................CG-GCCAGGTCGTTGGCCTTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
droSec2
CAGTGCAG----TGCGGTG-CGGTGCCAGTGACGTGAACTTGGG-AGCT-CGC---------------------TTGCATGATT---------GCGAGCGGC-------------------------------AGGCG-GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------GCG-----------------------------CTAATTTATGCACGCACGCTC--------------GGCGGCGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TGTA---------TTG--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................GACGTGAACTTGGG-AGCT-CGC---------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..................................................................................................................................................................AGGCATTGAGTCAAGGTGGCT...............................................................................................................................................................................................................................................................................................................................................................................2111.0010001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGGCACGGCGACACC..................2011.0011000
.....................................ACTTGGG-AGCT-CGC---------------------TTGCATGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
...................................GAACTTGGG-AGCT-CGC---------------------TTGCATGATT---------GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
dm3
CAGTGCGG----TGCGGTG-CGGTGATAGTGACGTGAACTTGGG-AGCT-CGC---------------------TTGCATGATT---------GCGAGCGGC-------------------------------AGGCG-GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------GCG-----------------------------CTAATTTATGCACGCACGCTC--------------GGCGGCGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TGTA---------TTG--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................A-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------T................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000
..........................TAGTGACGTGAACTTGGG-AGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...............................................................................TGATT---------GCGAGCGGC-------------------------------AGGCG-GC.........................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------TTG--T-GAATCTTGCAGATGGC.............................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACCGGCGACTGGGTGGG....2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------TC--G------------------------------------------------------TGTA---------TTG--T-GAATCTTGC....................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................CAGGCATTGAGTCAAGGTGGC................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000000000000000
..........................TAGTGACGTGAACTTGGG-AGCT-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................GATAGTGACGTGAACTTGGG-A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
..............................................................................................................................................AGGTCGTTGGCCTTGGCGGC....................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------------------------TGTA---------TTG--T-GAATCTTGCAGA.................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------T...........................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GGCATTGAGTCAAGGTGGC................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCGGCGACTGGGTGGGCA..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGCCCGATGCTGCGGCACG..........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TAGTGACGTGAACTTGGG-AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..............................GACGTGAACTTGGG-AGCT-CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG--T-GAATCTTGCAGATGG..............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GCACGCACGCTC--------------GGCGGCGG-----------......................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AGCGAA-------------TGC--------------AA-----------CTGACCGAGA....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CGGTG-CGGTGATAGTGACGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGACACCGGCGACTGGGTGGGCAC.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GAATCTTGCAGATGGCAGC..........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CAGTGCGG----TGCGGTG-CGGTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................................................................................................................................................................................................................................................................................................................................C--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TGTA---------....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................GG-AGCT-CGC---------------------TTGCATGATT---------GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................C---------------------TTGCATGATT---------GCGAGCGGC-------------------------------A................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AGAA---------------------------------------TC--G------------------------------------------------------TGTA---------TTG--T-GAATCTTGC....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGATGGCAGCCCGATG....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGCACGGCGACACCG.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GCAGGCATTGAGTCAAGGTGGCT...............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................AATTTATGCACGCACGCTC--------------GG.......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GCAGGCATTGAGTCAAGGTGG.................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AGAA---------------------------------------TC--G------------------------------------------------------TGTA---------TTG--T-GAATCTTG.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGATGGCAGCCCGA......................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................G-CGGTGATAGTGACGTGAACTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGCGACTGGGTGGGCAC.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................ATTGAGTCAAGGTGGCTTCCGT------------------------------G...........................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..........................................................................................................................................................................................................................................................................CGCTC--------------GGCGGCGG-----------G-CG-AAAGC............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TGGCCTTGGCGGCAGGCATTG............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................ACGTGAACTTGGG-AGCT-CGC---------------------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TAATTTATGCACGCACGCTC--------------G........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGACACCGGCGACTGGGT.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGATGCTGCGGCACGGCGACACC..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGTGACGTGAACTTGGG-AGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................TT---------GCGAGCGGC-------------------------------AGGCG-GCCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................................................................GC-------------------------------AGGCG-GCCAGGTCGTTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GG-AGCT-CGC---------------------TTGCATGATT---------GCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TC--G------------------------------------------------------TGTA---------TTG--T-GAATCTTGCA...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GAA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGACACCGGCGACTGGGTGG.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TGCACGCACGCTC--------------GGCGGCGG-----------T-A...................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................GGCAGGCATTGAGTCAAGGT...................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................GTCGTTGGCCTTGGCGGCAGGC................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AA---------------------------------------TC--G------------------------------------------------------TGTA---------TTG--T-GAATCTTG.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................................................................AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TG...............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................A-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TG...............................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CGAGAA---------------------------------------TC--G------------------------------------------------------TGTA---------TTG--T-GAA..........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AAGGTGGCTTCCGT------------------------------GCG-----------------------------CTAAA.......................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................CATGATT---------GCGAGCGGC-------------------------------AGGCG-...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................GAGTCAAGGTGGCTTCCGT------------------------------GCG-----------------------------CT..........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG--T-GAATCTTGCAGATGGCA............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CTTCCGT------------------------------GCG-----------------------------CTAATTTATGC.................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGGCGACACCGGCGACTG..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGCGG----TGCGGTG-CGGTGATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................................................................................................................................................................................................................................................................................................................................................................GACCGAGAA---------------------------------------TC--G------------------------------------------------------TGTA---------TTG--T-G............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA---------TTG--T-GAATCTTGCAGATT...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACCGGCGACTGGGTGGGCA..2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................GGCGGCAGGCATTGAGTCAA......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
CAGTGCGG----TGCGGTG-CGGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droEre2
G-----------AGCAGTG-CAGTGCCAGTGACGTGAACTTGGG-AGCT-CGC---------------------TTGCATGATT---------GAGAGCGGC-------------------------------AGGCA-GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------CCG-----------------------------CTAATTTATGCACGCACGCTC--------------GGCGGCGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TGAA---------TTG--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................CAGTGACGTGAACTTGGG-AGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGCACGGCGACACCG.................1911.0010000100
..................................................................................................................................................................................................................................................................................................................CG-AAAGCGAA-------------TGC--------------AA-----------CTGACC........................................................................................................................................................................................2111.0010000010
.....................................................................................................C-------------------------------AGGCA-GCCAGGTCGTTGGCCTTGGCG......................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
...............AGTG-CAGTGCCAGTGACGTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
..............CAGTG-CAGTGCCAGTGACGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
droYak3
CAG--------------TGTCAGTGCCAGTGACGTGAACTTGGG-AGCT-CGC---------------------TTGCATGATT---------GCGAGCGGC-------------------------------AGGCA-GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------CCGC-----------------------GTCCGCTAATTTATGCACGCACGCTC--------------GCCGGCGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TGAA---------TTG--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGCCCGATGCTGCGGCACGGC........................2511.00101000000000
..........................................................................................................................................................................................................................................................................................................................GAA-------------TGC--------------AA-----------CTGACCGAGAA---------------------------------------TC--G------------------------------------------------------TGA..............................................................................2511.00100000010000
....................................................................................................GC-------------------------------AGGCA-GCCAGGTCGTTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
....................................................................................................GC-------------------------------AGGCA-GCCAGGTCGTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................AA---------------------------------------TC--G------------------------------------------------------TGAA---------TTG--T-GAATCTTGCA...................................................2311.00110000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGATGCTGCGGCACGGCGACACCGGC...............2911.00100100000000
droEug1
A----------------TG-CAGTGCAAGTGACGTGAACTTGGGGAGCT-CGC---------------------TTGCATGATT---------GCGAGCGGC-------------------------------A-----GCCAGGCCGTTGGCCTTGGCGACCGGCATTGAGTCAAGGTGGCTTCCGT------------------------------TCG-----------------------------CTAATTTATGCACGCACGCTC--------------GC---CGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA-----------------------------------------TTG------------------------------------------------------TG-----------ATC--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCATGGCGACACCGGCGACTGGGTGGGCACCSizeHit CountTotal NormTotal
No Reads
droBia1
CCTTGCTGCTCGCTCGGCG-CAGTGCAGGTGACGTGAACTTGGGGAGCG-CGC---------------------TTGCATGATT---------GCGAGCGGC-------------------------------G-----GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------CCG-----------------------------CTAATTTATGCACGCACGCTC--------------GCCGGCGA-----------G-CG-AGAGCAAG-------------AGC--------------AA-CTGCAGCTGACTGACCGGGAA-----------------------------------------CTG------------------------------------------------------TG-----------CTC--T-GATTCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCSizeHit CountTotal NormTotal
No Reads
droTak1
G---------------CTG-CAGTGCATGTGACGTGAACTTGGGGAGCT-CGC---------------------CTGCATGATT---------GCGAGCG---------------------------------------GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------TGG-----------------------------CTAATTTATGCACGCACGCTC--------------CCCGGCGA-----------G-CG-AAAGC-------------------AT----------CGAATGTGCAGCTGACTGACCGAGAA----------------------------AACGTTGTTAATC--C------------------------------------------------------TAAA---------TTC--T-CAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCSizeHit CountTotal NormTotal
No Reads
droEle1
CCGAGCGG----TGCGGTG-CAGTGCAGGTGACGTGAACTTGGGGAGCT-CGC---------------------TTGCATGATT---------GCGAACGTC-------------------------------A-----GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------TCG-----------------------------TTAATTTATGCACGCACGCTC--------------GC---CGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------TTGACCGAGAA-----------------------------------------CTG------------------------------------------------------TG-----------ATC--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGGGATTGGGTGGGCACCSizeHit CountTotal NormTotal
No Reads
droRho1
C--------------------AGTGCAGGTGACGTGAACTTGGGGAGCT-CGC---------------------TTGCATGATT---------GCGAGCGTC-------------------------------A-----GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------TCG-----------------------------TTAATTTATGCACGCACGCTC--------------GC---CGG-----------G-CG-AAAGCGAA-------------TGC--------------AA-----------CTGACCGAGAA-----------------------------------------TTG------------------------------------------------------TG-----------CTC--T-GAATCTTGCAGATGGAAGCCCGATGCTGCGGCATGGCGACACCGGGGATTGGGTGGGCACCSizeHit CountTotal NormTotal
No Reads
droFic1
G----------------TG-CAGTGCAAGTGACGTGAACTTGGGGAGCT-CGC---------------------TTGCATGATT---------GCGAGCGAC------------------------------GCGTCG-CCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------TCG-----------------------------CTAATTTATGCACGCACGCTTGCTCGCTCACTCGC-TCGCCGG-----------G-CG-AAAGCGAATCCGAATCCGAAATGC--------------AA-------CTGACTGACCGAGAA-----------------------------------------TCG------------------------------------------------------TG-----------TTC--T-GAATCTTGCAGATGGCAGCCCGATGCTGCGGCACGGCGACACCGGCGATTGGGTGGGCACCSizeHit CountTotal NormTotal
No Reads
droKik1
G---------------ATG-CAGTGGAAGTGACGTGAACTTGGGAAGCT-CGC-T------------CGCTTGCCTGCATGATT---------GCGAGCGGC----------------GT-------------CGTTG-GCCAGGTCGTTGGCCTTGGCGGCAGGCATTGAGTCAAGGTGGCTTCCGT------------------------------TCG-----------------------------TTAATTTATGCACGCACGCTC--------------TCCGCCGG-----------TGCGCCAAGTGAA-------------TGCATATTTTCCCCACGAA-----------CTAACTGAGAC-----------------------------------------TTC------------------------------------------------------TG-----------TTCTCTCTTTTTTTGCAGATGGCAGCCCGATGCTGAGGCATGGCGATACCGGCGATTGGGTGGGCACCSizeHit CountTotal NormTotal
No Reads
droAna3
A---------------ATG-CAGTGGAAGTGACGTGAACTTGGGCAGCC-CGC---------------------TTACATGATTTTAGCGTTCGCGAGCGGC-------------------------------AGGCA-GTCGGGTCGTTGGCCTTGG-GGAAGGCATTGAGTCAAGGTGGCTTCCGTTCCGCTCCTCGCTACCCGCCGCCGATTCATTCG-----------------------------CTAATTTATGCACACGAGCAT--------------CC----CG-----------G-CG-AACGTGTC-------------TGC--------------AA-----------CTAACCAAGTGTTCTCCTTAGACTCGAATTAAAGTGCGAA----------TC--GTAATTAACATTCTTATTTAAATTCCATTACATTA----------------------------------------CTTTATTTCAGATGGCAGTCCAATGCTGCGTCATGGCGATACCGGTGATTGGGTGGGCACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................GTGACGTGAACTTGGGCAGCC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGGTGATTGGGTGGGCAC.2211.001100000
.............................................AGCC-CGC---------------------TTACATGATTTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............................................AGCC-CGC---------------------TTACATGATTTTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATGCTGCGTCATGGC........................2011.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATGGCGATACCGGTGATTGGGT.......2611.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGATACCGGTGATTG..........1911.001001000
droBip1
CG-----G----CCCGATG-CAGTGGAAGTGACGTGAACTTGGGCAGCC-CGC---------------------TTACATGATATT-GCGTTCACGAGCGTC-------------------------------A-----GTCGGGTCGTTGGCCTTGG-GGAAGGCATTGAGTCAAGGTGGCTTCCGATTTGCTCCTCGCC-----CCTCCGATTCACTCG-----------------------------CTAATTTATGCACACGAGCAT--------------CC----CG-----------G-CG-AACGTGTC-------------TGC--------------AA-----------CTAACCAAGTGTTCTCCTTAGAGTCAAATTAAAGTGGGAA----------TC--GCCATTAACATTGTAATTTAAATTCGCGTAGATTATTAAGCATACATGCATAATGTGCATTGATAGTCATT--T-AATTATTTCAGATGGCAGTCCAATGCTGCGTCATGGGGATACCGGCGATTGGGTGGGCACCSizeHit CountTotal NormTotal
No Reads
dp5
G-----------TCCGCTG-CGTCGAGAACGCTGTGAACTTGGG-AGCT-G--CTGGCTGTGCTGGCTGATGGCTTGCATGATT---------CCGATT------C--CGTTTCGACTGCCGCCG--TCGCCG-----TGTCAGGTCGTTGGCATTGATGGTAGTCATTGAGTCAAGGTGGCTTCCGC---------CGCT-----CACACGATTTATTTA-----------------------------TCAATTTATACAT------TT--------------TATGGC-------------G-CG-A-----AA-------------TGC--------------AA-----------TT----GAGAA-----------------------------------------TTC------------------------------------------------------TGGA---------------CGTTTCTTGTAGATGGCAGCCCGATGCTGCGTCACGGCGACACCGGTGACTGGGTGGGCACCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACCGGTGACTGGGT.......1811.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACACCGGTGACTGGGTGGGCA..2411.0010001000000
..................................TGAACTTGGG-AGCT-G--CTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
G-----------TCCGCTG-CGTCGAGAACGCTGTGAACTTGGG-AGCT-G--CTGGCTGTGCTGGCTGATGGCTTGCATGATT---------CCGATT------C--CGTTTCGACTGCCGCCG--TCGCCG-----TGTCAGGTCGTTGGCATTGATGGTAGTCATTGAGTCAAGGTGGCTTCCGC---------CGCT-----CACACGATTTATTTA-----------------------------TCAATTTATACAT------TT--------------TATGGC-------------G-CG-A-----AA-------------TGC--------------AA-----------TT----GAGAA-----------------------------------------TTC------------------------------------------------------TGGA---------------CGTTTCTTGTAGATGGCAGCCCGATGCTGCGTCACGGCGATACCGGTGACTGGGTGGGCACCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................GTCGAGAACGCTGTGAACTTGGG-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droWil2
---------------------------------GTGAACTTGAA-TGTT-TGC---------------------ATGCACA---------------------CGACGACGA--CGA-CTTTGTGAATTGAGAG-----TGTCGGGTCGTTGGCATTGGGTATAGTCATTCAGTCAAGGTGGCTTCCGC------------------------------CCGT----------------------------TTGACAAAAACACGCACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
---------------------------AATGACGTGAACTTGGTGCACGGCGG---------------------CTGCCCATTT---------GCGAGCACGAATCGCCGT--CGT-CGTCGCAG--CCACTG-----CGTCAGGTCGTTGGCATTGAGCGTACTCGTTGAGTCAAGGTAGCTTCCGC---------CGC------------------TCA-----------------------------CACACTCACACACACACACAC----ACACACACGC-ACGCAGTGTATTTAGTTGG-------------------------CGC--------------AA-----------TT----AAGAA------------TTGAA----------------------T----------------------------------------------------------TAAA----TTG--TCGTTGCCTTTTTTGCAGATGGCAGCCCGATGTTGCGTCACGGGGACACCGGCGACTGGGTGGGCACCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCCCGATGTTGCGT..............................1811.001000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA----TTG--TCGTTGCCTTTTTT......................................................2011.001000000001000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCACGGGGACACCGGC...............2011.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ACAC----ACACACACGC-ACGCAGT.................................................................................................................................................................................................................................................................2150.201000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................CACACACACACAC----ACACACA............................................................................................................................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
droMoj3
CG--------------TTG-CAATGGAAGTGACGTGAACTTGG--------------------------------TGCACGGCT---------GTCGGCTGT-----------CGG-CGTCGCAG--CCGCTG-----CGTCAGGTCGTTGGCATTGAGCGCCGCCGTTGAATCAAGGTAGCTTCCGC-------------------------------CG-----------------------------CTCACGCAAACACACACAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................G--CCGCTG-----CGTCAGGTCGTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droGri2
-----------------TG-CAATGGAAGTGACGTGAACTTGGT--GCA-TGG---------------------CTGCCCATTT---------GCGAGCACG-------------------------------AATCGCGTCAGGTCGTTGGCATTGAGTGTAGTCATTGAGTCAAGGTAGCTTCCGT---------CGCT-----CACACAACTTAGTCA-CAAAACACTCATACACATACAACATATGTTGATGTATTGATGTAT-CTC--------------AGT-GCAG-----------T-TT-TTGGCGAG-------------TGC--------------AT-----------TTAAG----AA------------TTGAA----------------------TATTG------------------------------------------------------TA-----------TTG--T-GCTCTTTGCAGATGGCAGCCCAATGCTGCGTCATGGCGATACTGGGGACTGGGTGGGCACCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:17 PM