ID:

dsi_11448

Coordinate:

3r:4207804-4207953 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

0.0	0.0	0.2

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

AAAACTAAAAAATTGACTTAGTTATTTTTATTTTTCCGACTTCTAGAAAGGTATTGTGAAATAATTATTTATTTGTCTTAAGCTGTTACTATTGATGTTCTGAACTCTACAATATAAATGAAATAAATAAATTTATATTAAATAACTGGACTGAATTTTATTAGATAATAATTGATTTTGATAACAATTCAAATTTAAACACGATATAATTTGTTGTTACGTATCGATTCCGACTATCGATTGCAAGCAG *******************************************************************................(((.(((((..(((...)))....))))))))...********************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	M023 head	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis
.......................................................................TCTGTCTTGAGCTGTTACTCTTG............................................................................................................................................................	23	3	1	15.00	15	2	10	3	0	0	0	0
.....................................................................TGTCTGTCTTGAGCTGTTACT................................................................................................................................................................	21	3	1	7.00	7	7	0	0	0	0	0	0
.........................................................................TGTCTTGAGCTGTTACTCTTG............................................................................................................................................................	21	2	1	6.00	6	4	2	0	0	0	0	0
....................................................................TTGTCTGTCTTGAGCTGTTACT................................................................................................................................................................	22	3	1	4.00	4	1	3	0	0	0	0	0
.......................................................................TCTGTCTTGAGCTGTTACTCT..............................................................................................................................................................	21	3	2	2.50	5	3	2	0	0	0	0	0
...................................................................................................CTGAACTCTACAATATAAATG..................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0
.....................................................................TATTTGTCTTAAGCTGTTACTATTGA...........................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0
.........................................................................TGTCTTGAGCTGTTACTCTTGTTGTT.......................................................................................................................................................	26	3	1	1.00	1	1	0	0	0	0	0	0
........................................................................CTGTCTTGAGCTGTTACTCTTG............................................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0	0
...CCTAAAAAATTGACGTAGTAATTTT..............................................................................................................................................................................................................................	25	3	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................TGAACTCTACAATATAAATGAAATAAA...........................................................................................................................	27	0	1	1.00	1	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................TCCGACGATCGATTGGAAGC..	20	2	2	0.50	1	0	0	0	1	0	0	0
..........................................................................GTCTTGAGCTGTTACT................................................................................................................................................................	16	1	2	0.50	1	1	0	0	0	0	0	0
........................................TTCTAGAGGGGAATTGTGAAA.............................................................................................................................................................................................	21	3	2	0.50	1	0	0	0	0	1	0	0
.......................................................................TCTGTCTTGAGCTGTTACTCTT.............................................................................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0	0
.........................................................................TGTCTTGAGCTGTTACTCT..............................................................................................................................................................	19	2	2	0.50	1	0	1	0	0	0	0	0
......................................ATTTCTAGAGGGGTATTGTGA...............................................................................................................................................................................................	21	3	3	0.33	1	0	0	0	0	1	0	0
............................................................................CTTGAGCTGTTACTCTTG............................................................................................................................................................	18	2	3	0.33	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GACTATCGGTTTCAAGC..	17	2	11	0.27	3	0	0	0	0	3	0	0
.....................................................................TGTCTGTCTTGAGCTGTTAC.................................................................................................................................................................	20	3	5	0.20	1	1	0	0	0	0	0	0
.....TAAAAAATTGACGTAGATACT................................................................................................................................................................................................................................	21	3	7	0.14	1	0	0	1	0	0	0	0
.......................................................................TCTGTCTTGAGCTGTTACTC...............................................................................................................................................................	20	3	8	0.13	1	0	1	0	0	0	0	0
.....TAAAAAATTGACGTAGATA..................................................................................................................................................................................................................................	19	2	9	0.11	1	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................CGTTTCGATTCCGACTCTGG...........	20	3	9	0.11	1	0	0	1	0	0	0	0
...........................................................................TCTTGAGCTGTTACT................................................................................................................................................................	15	1	10	0.10	1	1	0	0	0	0	0	0
........................................................................CTGTCTTGAGCTGTTACTCT..............................................................................................................................................................	20	3	11	0.09	1	1	0	0	0	0	0	0
...................................................................................................................................................................GATAATAGTTGATTTTGTT....................................................................	19	2	13	0.08	1	0	0	0	0	1	0	0
.......................................................................TTTGTCCTAAGCTGTTAAC................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................ATTTGTTGTTGCGTA...........................	15	1	20	0.05	1	0	0	0	0	1	0	0

Anti-sense strand reads

TTTTGATTTTTTAACTGAATCAATAAAAATAAAAAGGCTGAAGATCTTTCCATAACACTTTATTAATAAATAAACAGAATTCGACAATGATAACTACAAGACTTGAGATGTTATATTTACTTTATTTATTTAAATATAATTTATTGACCTGACTTAAAATAATCTATTATTAACTAAAACTATTGTTAAGTTTAAATTTGTGCTATATTAAACAACAATGCATAGCTAAGGCTGATAGCTAACGTTCGTC ********************************************************************************************************************************................(((.(((((..(((...)))....))))))))...*******************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR902008 ovaries	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR902009 testis	M024 male body	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.......................................................................................................................................................................................................................CAATGCATAGCTAAGGCTG................	19	0	1	2.00	2	2	0	0	0	0	0	0	0
.........................AAAATAAAAAGGCTGAAG...............................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
..........................AAATAAAAAGGCCTAGGATCTT..........................................................................................................................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0	0	0
.....ATTTTTTAACTGAATCTAA..................................................................................................................................................................................................................................	19	2	14	0.21	3	0	0	2	0	0	0	1	0
.............................................................................................CTAGCAGACTTGAGATCTT..........................................................................................................................................	19	3	9	0.11	1	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................AGTTAAGACTGTTAGCTAACG......	21	3	9	0.11	1	0	0	0	1	0	0	0	0
..................................AGGCTGAACAACTTACCAT.....................................................................................................................................................................................................	19	3	14	0.07	1	0	0	0	0	0	1	0	0
...............................................................................................ACAAGAATTGAGATGT...........................................................................................................................................	16	1	17	0.06	1	0	0	0	0	0	0	0	1

Generated: 04/23/2015 at 10:56 PM