dsi_11423

TTTCGTGGTTTTAACTCGGTATATGACACTGTTTTGATCTTATATTTTTTCGGTTTCAATTTGATGGGCGAATATATCATATAGTTGCAATAGGAGCAGTCGAAAAATTATTTGCTGCAAGGGTATATGAGCATGCCGAAGCAAGCATCCTTTCTTGTTAAATATGAGATCAAGAAATTAAGGGAATTCTTATTTATTAGTTGTTGGAGCTGCCCCAATTCCAAGACATCATCAAAATAAAAACTATTGG ************************************************.(((((((((((((((((........(((((((.((.........((((.((((......))))))))..)).)))))))((.(((....))).)).......)))))))))).)))))))(((((.((....)).))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo
...................TATATGACACTGTTTTGATCTTATA..............................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................TCTTGTTAAATATGAGATCAAGA...........................................................................	23	0	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................TGAGATCAAGAAATTAAGGGAATTCTT...........................................................	27	0	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................TGAGCATGCGGAACCAAGCACC.....................................................................................................	22	3	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................TTCTAAGACATTATCAAAATGA..........	22	3	4	0.25	1	0	0	0	0	1	0
.....................................................................................................................................TGCCGAAGCAACTATCC....................................................................................................	17	2	12	0.08	1	0	0	0	1	0	0
.................................................................................TAGTTGAAATAGGAGC.........................................................................................................................................................	16	1	15	0.07	1	0	0	0	1	0	0
.....................TTTGACACTGTTTTGA.....................................................................................................................................................................................................................	16	1	18	0.06	1	0	0	0	1	0	0
....................................................................................................................................................................TAAGATCAAGAAATTAAAGA..................................................................	20	3	20	0.05	1	0	0	0	1	0	0
....................................................................................................................GCAAGGGTAAGTGAGCAGG...................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

AAAGCACCAAAATTGAGCCATATACTGTGACAAAACTAGAATATAAAAAAGCCAAAGTTAAACTACCCGCTTATATAGTATATCAACGTTATCCTCGTCAGCTTTTTAATAAACGACGTTCCCATATACTCGTACGGCTTCGTTCGTAGGAAAGAACAATTTATACTCTAGTTCTTTAATTCCCTTAAGAATAAATAATCAACAACCTCGACGGGGTTAAGGTTCTGTAGTAGTTTTATTTTTGATAACC ************************************************.(((((((((((((((((........(((((((.((.........((((.((((......))))))))..)).)))))))((.(((....))).)).......)))))))))).)))))))(((((.((....)).))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M023 head
.....................................................................................................................................ACGGCTTCGTTCGTAGGAAAGAACAAT..........................................................................................	27	0	1	2.00	2	2	0	0	0
.....................................................................................................................................ACGGCTTCGTTCGTAGGAAAGAACAATT.........................................................................................	28	0	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................................CGGGGTTAAGGTTCT........................	15	0	1	1.00	1	0	1	0	0
...................................................................................................................................................AGGAAAGAACAATTTATACTCTAGTT.............................................................................	26	0	1	1.00	1	1	0	0	0
.............TGAGCCATATACTGTGACAAAACTAGAAT................................................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................AGGTTCTGTAGTAGTTTTATTTTTGAT....	27	0	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................TCGACGAGGTTAAGGTTTT........................	19	2	8	0.13	1	0	0	0	1
.................................................................................................................................................TTAGGAAAGAACAAT..........................................................................................	15	1	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:20921095-20921344 +	dsi_11423	TTTCGT-GGTTT-TA-AC------------------------TCGGTATAT-------------------GACAC---TGTTTTGAT--CTTATATTTTTTCG------------GTTTCAAT-TT------GAT-GGGCGAATATATCATATAGTTG----------CAATAGGAGC---AGTCGAA----AAAT-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGCTGCAAGGGTATATGAGCA--------TGCCGAAGCAAGCA--TCCTTTCTTGTTAAAT----------A---TGAGA-------------TCAAGAAATTAAGGGAATT-------------------------------------------CTTATTTATTAGTTGTTGGA------GCTGCCC-------CAAT---TCCAAGACATCA--TCAAAATA---AAAACTAT--------TGG
droSec2	scaffold_28:161113-161363 +		TTTCGT-GGTTT-TA-AC------------------------TCGGTATAT-------------------GACAC---TGTTTTGAT--CTTATATTTTTTCG------------GTCTCAAT-TT------GAT-GGGCGAATATATCATATAGTTG----------CAATAGGAGC---GGTCGAA----AAA--T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGCTGCAAGGGTATATGAGCA--------TGCCGAAGCAAGCATCTCCTTTCTTGTTAAAT----------A---TGAGA-------------TCAAGAAATTAAGAGAATT-------------------------------------------CTTATTTATTAGTTGTTGGA------GCTGCCC-------CAAT---TCCAAGACATCA--TCAAAATA---AAAACTAT--------TGG
dm3	chr2L:21643569-21643813 +		TTTCGT-GCTTC-TA-AC------------------------TCGGTATAT-------------------GACAC---TATTTTGAT--CTTATATTTTTTCG------------ATTTCAAT-TT------GAT-GGGCGACTATATCATATAGTTG----------CAGTAGGAAC---AGTCGAA----AAAT-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCTGCAAGGGTATATGAGCA--------TGCCGAAGCATA-------TTTCTTGTTAAAT----------A---TGATA-------------TCAAGAAATTAATAGAATT-------------------------------------------CTCATGTATTAGTTGTTGGA------GCTGCCA-------CAAT---TCCAAGACATCA--TCAAAATA---AAAACTAT--------TGG
droEre2	scaffold_4770:1064024-1064256 +		TTTCGT-TGTTTTCGATCA---TAAAGTGTTTTTAC------TCGGTATAC------------A------GACATCAGT-------------------TTTCGTTCTCGCTCGCACTTCC---------------------AC---------------------------------------------------------------------------------------------------------------------TAGATAAAGTA-------A----CGGGTATCTGATAGTCGGGGATCTCGACTATAGCATTCTCTCTTCTT------GTTTTAATA---------------------------TA---GTTTTACTGCAAGGGTATAAAAGCTTCGGCA--TGCCGAAGCTAGTT--TCCTTTCTAGTTTGAA--------------------------------TCAAAACTTTGATGGTA----------------------------------------------------------------------------------------------------------------------AATTTGT--------CTA
droYak3	2R:1412400-1412647 -		CTTCGC-TGTTTTCGATC-------------------------------------------------------------------------------------------------------------------ATTAAACGACTACATCGTTTAGCTG----------CCATAG---------TCAGA----AAAT-TAATTG---AATATTTCAAAACAAAATAATA--------------------------------------------------------GTTTTGTTTTTTT-------------TTTCTGA-TCATAAATTGTTATTTTT---------CACCAAGATAAAAAAAT-----ATTTT------TATATTTGCAAGGGGATATAGGATTCGGCT--TGCCGAATCTAGCT--TCCCTTCTTGTATATATTTTTTAAACA---GTTGA-------------TAACGA---TAATGAAGTG-------------------------------------------CTTATG-------------T------G-------------------------------------------------------------CTA
droEug1	scf7180000405561:3098-3176 -		TAATGT-GC-----------------------------------------------------------------------------------------------------------------------------------GAAAATTTCTTTTATAAA----------ATATATAAGC---TGCACAA----AAGA-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGACGAAAAGGTATATGAGCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGC--------TAA
droBia1	scf7180000302432:39224-39480 -		TTTTGT-AGCATATAACC-------------------------TTCTA---AGCTTG------G--AAATAACC----TTTTTTAATTACTTATGAATTT-CG------------TATTACATTTT--TCAAAATCGGACGACTATATCATATAGCTG----------CCATAGGAAC---AAGCGGA----AAAT-TAGTGGCAAAATAATATAAAA-AAAATTATAT-----------CTTTGGTGTTTTTTAAC----------------------------------------------------------------------------------------------------------------------------------------ATATAACCTCCTGCG--CTTGGAAA--------------------------------------------------------------------------T-------------------------------------------CATATTTTTTAATTGGTATA------GAATTTC-------GAAT---TC--AATTTTGA--TCAAAATC-GGACAACTAT--------ATA
droTak1	scf7180000415069:19476-19724 +		GTAATT-T-----TA-ACTTTGTAGGAAGTAGGCGTTTT-----------------GATTTTTG------------------------------------------------------ACAAC-TT------AAA-AACAAAATTATCCCTGGAACCGCACTGAGTGAGCATTAAA---------CTA----TAGG-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----TTTGC------TTTATCTGCAAGGGTATATAAGCTTCGGCT--GGCCGAAGCTAGCT--TCCTTTCTTGTTAACT----------T---TCTTA-------------TACACA----------------------------------------------GCATTGAGTTCC-AGTTATTAGTT-TACAA------GCTACACCTAGTCAAAGT---T----AAAAAAG--TAGAAATA---AATGCAAA--------AGC
droEle1	scf7180000491047:562568-562792 -		AATTAA-GCTGC-AA-A-------------------------TCGTCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----------CTTCAATGTTTTTAAACATATACGCAAGTAA-------ATCATAATTTTAATGTT--------------------------------------------------TTCAAAAATATTTAATT-----CTTGC------GATAGCTGCAAGGGTATATGAACTTCGGCT--TGCCGAAGTTTGCT--TTCTTTCTTGTTTTC-----------------------------------AATAAATTCCGCGAAT--------------------------------------------TGAATTTTTTACATTTAAGTGCTGCAATTAAAT-------AAAA---AACGGAAAATTA--TAAAAATA----------------------
droRho1	scf7180000768931:896-1129 -		TTTGGT-GTTTT-TAAAGT---TAGGAAGTTGGGATTTTTTATT----------------------------------------------------------A------------GTATTA------------------AGAATGCATCATATAAATA----------ATTTTAGAG-----------------------------------------------------------------------------------------------------------------------------AATATAATTTACAG-----------------------------------------------------------A--ATATTCTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTTGCTT-TCCTTTCTTGTTTTTT---------------------------------CTTGAAAATATCGCGCTT-------------------------------------------GGGATTTATTGATCATTAAA------ACGGCAGCTGGTTTCAAT---TCAAAGTCAACA--GTACAATA---TAAATT-------------
droFic1	scf7180000453254:16031-16364 -		CATCGT-TGGTTTTTATT-------------------------AGATA---AGCATGATTTTTGGAATATAAAG----TTTTCTAACGACTCTTGAAT-TACG------------AATTAAAT-TTGATCAAAATCGGACAACTATATCATATAGCTC----------CCATATGATCTATAGTCGAA----AA-T---ATGGAAAATGAATAGAAAA-ATCGTCTTAG-----------CTTCGATGTTGTTTAGCCTTTATG-----------------------------------------------------------------T------------------------ATTTTATTCGACATATTT------GATGACTGCAAGGGTATATAAGCTTCGGCT--TGCCGAAGCTAGCT--TCCTTTCTTGTTAATA----------------------------------AATAAATTAAATTAAA-------------------------------------------------TTTTCACTTCCAAGT------GCTGCCA-------AAAA---T---AGACAAAA--AACAAAAA---AAAACTCT--------T--
droKik1	scf7180000302698:316577-316816 +		CTGTCAAACTGT-AA-AC------------------------ATAATA-----------------------------------------------------------------------------------------GG-----------------------------------------------------------------------------------------------------------------------TATAGGTAAAATGTTATCAA-ACTCTGTTTAGTGTCTGT-------------TTTCGGCATTATAATTTATG------ATATAAATA---------------------------TGAAAACCAATCTGCAAGGGTATACAAACTTCGGCG--TGCCGAAGTTAGCT--TCCTTTCTTGTTAAAT----------A---TTAAA-------------ATAATAGAAAAAAAAAGAT-------------------------------------------TT-AAATATA------TAAA------GTTATG-----TT-TAAATATTAAAAAATACCATTTAAAAATG---AAAACTA-----------T
droAna3	scaffold_13499:999704-999928 +		TTTGGT-GCTTT-TTAAGT---TAGAAAGATGGGAC------TTGGTCTA-GATTTG------G--ACAAAA------T-----AAT--CT---GATTTGCC-----------AAATT-------TCATAAGGATCAGCCGACTATATCCTATAGCTG----------CCATATAACT---GAACGGA----AATG-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAACTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTAGCTT-TCCTTTCTTGTTTAAG--------------------------------TCTAGTACT-------------------------------------------GCA---------------------------------------A------------------------------AAAATC-AGT----TGTTTCCTAGTTGT
droBip1	scf7180000394943:7919-8181 +		TTTCGT-GTTTT-TGAAGA---TAGAAAGCTGGAAC------TTGGTACA--------------------GATTA---TATTTTGAT--CC---ATCCTACC-----------AAATT-------TCATAAGGATCGGCCAACTATATCCGATGTTTG----------CGATATATAT-----CCGG----------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGCTGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTAGCTT-TCCTTTCTTGTTTAAT----------A---TAATT-------------ATTTTTATTTGAAACAATTTTATTTAAAAGTGTTATAATTTTATTTTTCACTGCATCG---------------------------------------------------------ACAT-------GAAAA---AAAATTCT--------TGT
dp5	4_group1:4050235-4050296 +		TTTTTA-T-----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTTATTGGA------ACTGCCA-------CAGT---TCCAGGATATCA--TCAAAATC---AAGACGAT--------TGG
droPer2	scaffold_5:1219483-1219544 -		TTTTTG-T-----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTTATTGGA------ACTGCCA-------CAGT---TCCAGGATATCA--TCAAAATC---AAGACGAT--------TGG
droWil2	scf2_1100000004784:418-667 +		GCCGTT-CTTTC-GG-A-------------------------------AAC-------------------ATTAG---CCTTTTTAG--CTTAAACTTTTT----------------TCCACT-TT------GAT-AGC-----------------------------------------------------------------------------------------------------------------------TATAGGTAAGGAA-------A----GAGTTA-----------------------------------------------------------------------------------CCAA--AAATGTTGCAAGGGTATACAAACTTTGACG-CGGTCGAAGTTAGCCCCGGCCCTCTGGTTTTGT----------AATTTAATAAGTCTTTCAGGAATCAACCAATTTTGCCCATT-------------------------------------------CTTTTTTTGTAAATGTTCGT------TGTGGCC-------CAAA---GAAAAGTTTTTT--CCAAAAGAAAGTTAATTTT--------CAG
droVir3	scaffold_12100:402709-402943 -		TTTTGT-TTATC-AA-AC------------------------ACGGCATTC------------AGTAG-TTTTAC---TATGCTCCT--CATATATATGCAAG------------ATC-------CTATTAAGATCGGACCACTAAATCATATAGCTG----------CCATAGGAAC---AATCGGTAGAAAA-TTA---AGTTTTTGTATGACA---AACATTTTGTTTATCAAGATATCTTGACCAAATTCGGTATTTATT-----------------------------------------------------------------A------------------------GTTTTACTATACTCCTCA------TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---TGCAAGATCCTA--TTAAGATC----GGACTAC--------TAT
droMoj3	scaffold_6500:11503291-11503353 +		TTTTTC-CTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCTATTGGA------ACTGCCA-------CAGT---TTCAGGACATCA--TTAAGATA---AAGACAAT--------TGG
droGri2	scaffold_15252:1667185-1667249 -		ACTCTA-AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTAGCTGCTGGA------ATTGCCA-------CAAT---TCCAGGACATAA--TTAAAATC---AAGACCAT--------TGG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TTTCGT-GGTTT-TA-AC------------------------TCGGTATAT-------------------GACAC---TGTTTTGAT--CTTATATTTTTTCG------------GTTTCAAT-TT------GAT-GGGCGAATATATCATATAGTTG----------CAATAGGAGC---AGTCGAA----AAAT-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGCTGCAAGGGTATATGAGCA--------TGCCGAAGCAAGCA--TCCTTTCTTGTTAAAT----------A---TGAGA-------------TCAAGAAATTAAGGGAATT-------------------------------------------CTTATTTATTAGTTGTTGGA------GCTGCCC-------CAAT---TCCAAGACATCA--TCAAAATA---AAAACTAT--------TGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................TATAT-------------------GACAC---TGTTTTGAT--CTTATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGTTAAAT----------A---TGAGA-------------TCAAGA...................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGA-------------TCAAGAAATTAAGGGAATT-------------------------------------------CTT........................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

TTTCGT-GGTTT-TA-AC------------------------TCGGTATAT-------------------GACAC---TGTTTTGAT--CTTATATTTTTTCG------------GTCTCAAT-TT------GAT-GGGCGAATATATCATATAGTTG----------CAATAGGAGC---GGTCGAA----AAA--T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGCTGCAAGGGTATATGAGCA--------TGCCGAAGCAAGCATCTCCTTTCTTGTTAAAT----------A---TGAGA-------------TCAAGAAATTAAGAGAATT-------------------------------------------CTTATTTATTAGTTGTTGGA------GCTGCCC-------CAAT---TCCAAGACATCA--TCAAAATA---AAAACTAT--------TGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

TTTCGT-GCTTC-TA-AC------------------------TCGGTATAT-------------------GACAC---TATTTTGAT--CTTATATTTTTTCG------------ATTTCAAT-TT------GAT-GGGCGACTATATCATATAGTTG----------CAGTAGGAAC---AGTCGAA----AAAT-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCTGCAAGGGTATATGAGCA--------TGCCGAAGCATA-------TTTCTTGTTAAAT----------A---TGATA-------------TCAAGAAATTAATAGAATT-------------------------------------------CTCATGTATTAGTTGTTGGA------GCTGCCA-------CAAT---TCCAAGACATCA--TCAAAATA---AAAACTAT--------TGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................T-------------------GACAC---TATTTTGAT--CTTATATTTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TAGGAAC---AGTCGAA----AAAT-..............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ATAT-------------------GACAC---TATTTTGAT--C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAATAGAATT-------------------------------------------CTCATGTATTAGT..............................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TTC-TA-AC------------------------TCGGTATAT-------------------GACAC---TAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGGA------GCTGCCA-------CAAT---TCCA........................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................GGCGACTATATCATATAGTTG----------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGGA------GCTGCCA-------CAAT---TCCAAGAC....................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------------------------------------CTCATGTATTAGTTGTTGGA------GCT..............................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TTTCG------------ATTTCAAT-TT------GAT-GGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ATAT-------------------GACAC---TATTTTGCA--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTTCGT-TGTTTTCGATCA---TAAAGTGTTTTTAC------TCGGTATAC------------A------GACATCAGT-------------------TTTCGTTCTCGCTCGCACTTCC---------------------AC---------------------------------------------------------------------------------------------------------------------TAGATAAAGTA-------A----CGGGTATCTGATAGTCGGGGATCTCGACTATAGCATTCTCTCTTCTT------GTTTTAATA---------------------------TA---GTTTTACTGCAAGGGTATAAAAGCTTCGGCA--TGCCGAAGCTAGTT--TCCTTTCTAGTTTGAA--------------------------------TCAAAACTTTGATGGTA----------------------------------------------------------------------------------------------------------------------AATTTGT--------CTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................................................................................................................................................................................................................................................A---------------------------TA---GTTTTACTGCAAGGGTATA.......................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
...............................TTTAC------TCGGTATAC------------A------GACATCAGT-------------------T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0

droYak3

CTTCGC-TGTTTTCGATC-------------------------------------------------------------------------------------------------------------------ATTAAACGACTACATCGTTTAGCTG----------CCATAG---------TCAGA----AAAT-TAATTG---AATATTTCAAAACAAAATAATA--------------------------------------------------------GTTTTGTTTTTTT-------------TTTCTGA-TCATAAATTGTTATTTTT---------CACCAAGATAAAAAAAT-----ATTTT------TATATTTGCAAGGGGATATAGGATTCGGCT--TGCCGAATCTAGCT--TCCCTTCTTGTATATATTTTTTAAACA---GTTGA-------------TAACGA---TAATGAAGTG-------------------------------------------CTTATG-------------T------G-------------------------------------------------------------CTA

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

TAATGT-GC-----------------------------------------------------------------------------------------------------------------------------------GAAAATTTCTTTTATAAA----------ATATATAAGC---TGCACAA----AAGA-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGACGAAAAGGTATATGAGCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGC--------TAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTTTGT-AGCATATAACC-------------------------TTCTA---AGCTTG------G--AAATAACC----TTTTTTAATTACTTATGAATTT-CG------------TATTACATTTT--TCAAAATCGGACGACTATATCATATAGCTG----------CCATAGGAAC---AAGCGGA----AAAT-TAGTGGCAAAATAATATAAAA-AAAATTATAT-----------CTTTGGTGTTTTTTAAC----------------------------------------------------------------------------------------------------------------------------------------ATATAACCTCCTGCG--CTTGGAAA--------------------------------------------------------------------------T-------------------------------------------CATATTTTTTAATTGGTATA------GAATTTC-------GAAT---TC--AATTTTGA--TCAAAATC-GGACAACTAT--------ATA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GTAATT-T-----TA-ACTTTGTAGGAAGTAGGCGTTTT-----------------GATTTTTG------------------------------------------------------ACAAC-TT------AAA-AACAAAATTATCCCTGGAACCGCACTGAGTGAGCATTAAA---------CTA----TAGG-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----TTTGC------TTTATCTGCAAGGGTATATAAGCTTCGGCT--GGCCGAAGCTAGCT--TCCTTTCTTGTTAACT----------T---TCTTA-------------TACACA----------------------------------------------GCATTGAGTTCC-AGTTATTAGTT-TACAA------GCTACACCTAGTCAAAGT---T----AAAAAAG--TAGAAATA---AATGCAAA--------AGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AATTAA-GCTGC-AA-A-------------------------TCGTCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----------CTTCAATGTTTTTAAACATATACGCAAGTAA-------ATCATAATTTTAATGTT--------------------------------------------------TTCAAAAATATTTAATT-----CTTGC------GATAGCTGCAAGGGTATATGAACTTCGGCT--TGCCGAAGTTTGCT--TTCTTTCTTGTTTTC-----------------------------------AATAAATTCCGCGAAT--------------------------------------------TGAATTTTTTACATTTAAGTGCTGCAATTAAAT-------AAAA---AACGGAAAATTA--TAAAAATA----------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTGGT-GTTTT-TAAAGT---TAGGAAGTTGGGATTTTTTATT----------------------------------------------------------A------------GTATTA------------------AGAATGCATCATATAAATA----------ATTTTAGAG-----------------------------------------------------------------------------------------------------------------------------AATATAATTTACAG-----------------------------------------------------------A--ATATTCTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTTGCTT-TCCTTTCTTGTTTTTT---------------------------------CTTGAAAATATCGCGCTT-------------------------------------------GGGATTTATTGATCATTAAA------ACGGCAGCTGGTTTCAAT---TCAAAGTCAACA--GTACAATA---TAAATT-------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CATCGT-TGGTTTTTATT-------------------------AGATA---AGCATGATTTTTGGAATATAAAG----TTTTCTAACGACTCTTGAAT-TACG------------AATTAAAT-TTGATCAAAATCGGACAACTATATCATATAGCTC----------CCATATGATCTATAGTCGAA----AA-T---ATGGAAAATGAATAGAAAA-ATCGTCTTAG-----------CTTCGATGTTGTTTAGCCTTTATG-----------------------------------------------------------------T------------------------ATTTTATTCGACATATTT------GATGACTGCAAGGGTATATAAGCTTCGGCT--TGCCGAAGCTAGCT--TCCTTTCTTGTTAATA----------------------------------AATAAATTAAATTAAA-------------------------------------------------TTTTCACTTCCAAGT------GCTGCCA-------AAAA---T---AGACAAAA--AACAAAAA---AAAACTCT--------T--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTGTCAAACTGT-AA-AC------------------------ATAATA-----------------------------------------------------------------------------------------GG-----------------------------------------------------------------------------------------------------------------------TATAGGTAAAATGTTATCAA-ACTCTGTTTAGTGTCTGT-------------TTTCGGCATTATAATTTATG------ATATAAATA---------------------------TGAAAACCAATCTGCAAGGGTATACAAACTTCGGCG--TGCCGAAGTTAGCT--TCCTTTCTTGTTAAAT----------A---TTAAA-------------ATAATAGAAAAAAAAAGAT-------------------------------------------TT-AAATATA------TAAA------GTTATG-----TT-TAAATATTAAAAAATACCATTTAAAAATG---AAAACTA-----------T	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTTGGT-GCTTT-TTAAGT---TAGAAAGATGGGAC------TTGGTCTA-GATTTG------G--ACAAAA------T-----AAT--CT---GATTTGCC-----------AAATT-------TCATAAGGATCAGCCGACTATATCCTATAGCTG----------CCATATAACT---GAACGGA----AATG-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAACTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTAGCTT-TCCTTTCTTGTTTAAG--------------------------------TCTAGTACT-------------------------------------------GCA---------------------------------------A------------------------------AAAATC-AGT----TGTTTCCTAGTTGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTAGCTT-TCCTTTCTTGTTTAAG--------------------------------T........................................................................................................................................................	27	20	0.10	2	1	1	0	0	0	0
................................................................................................................................TAAGGATCAGCCGACTATATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTT-TCCTTTCTTGTTTAAG--------------------------------T........................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0
................................................................................................................................................ATATCCTATAGCTG----------CCATATAACT---GAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................ATATCAACTTCGGCTCCGCC......................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.....................................................TTTG------G--ACAAAA------T-----AAT--CT---GATTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTTAGCTT-TCCTTTCTTGTTTAAG--------------------------------T........................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................TCATAAGGATCAGCCGACTATAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.......................AGAAAGATGGGAC------TTGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTCCGCCCGAAGTTAGC............................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1

droBip1

TTTCGT-GTTTT-TGAAGA---TAGAAAGCTGGAAC------TTGGTACA--------------------GATTA---TATTTTGAT--CC---ATCCTACC-----------AAATT-------TCATAAGGATCGGCCAACTATATCCGATGTTTG----------CGATATATAT-----CCGG----------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGCTGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTAGCTT-TCCTTTCTTGTTTAAT----------A---TAATT-------------ATTTTTATTTGAAACAATTTTATTTAAAAGTGTTATAATTTTATTTTTCACTGCATCG---------------------------------------------------------ACAT-------GAAAA---AAAATTCT--------TGT	Size	Hit Count	Total Norm	Total
No Reads

dp5

TTTTTA-T-----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTTATTGGA------ACTGCCA-------CAGT---TCCAGGATATCA--TCAAAATC---AAGACGAT--------TGG

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

TTTTTG-T-----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTTATTGGA------ACTGCCA-------CAGT---TCCAGGATATCA--TCAAAATC---AAGACGAT--------TGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

GCCGTT-CTTTC-GG-A-------------------------------AAC-------------------ATTAG---CCTTTTTAG--CTTAAACTTTTT----------------TCCACT-TT------GAT-AGC-----------------------------------------------------------------------------------------------------------------------TATAGGTAAGGAA-------A----GAGTTA-----------------------------------------------------------------------------------CCAA--AAATGTTGCAAGGGTATACAAACTTTGACG-CGGTCGAAGTTAGCCCCGGCCCTCTGGTTTTGT----------AATTTAATAAGTCTTTCAGGAATCAACCAATTTTGCCCATT-------------------------------------------CTTTTTTTGTAAATGTTCGT------TGTGGCC-------CAAA---GAAAAGTTTTTT--CCAAAAGAAAGTTAATTTT--------CAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGTTAGCCCCGGCCCTCTGGTTT............................................................................................................................................................................................	27	20	1.80	36	0	36	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................CG-CGGTCGAAGTTAGCCCCGG.......................................................................................................................................................................................................	21	20	0.30	6	0	6	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAATCAACCAATTTTGCCC.........................................................................................................................................	23	20	0.10	2	0	1	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................GGTATACAAACTTTGACG-CGGTCGAA..................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGGAATCAACCAATTTTGCCCATT-------------------------------------------...........................................................................................	27	20	0.10	2	0	0	0	2	0
............................................................................................................................TT------GAT-AGC-----------------------------------------------------------------------------------------------------------------------TATAGGTAAGGAA-------A----GAGT....................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAATCAACCAATTTTGCCCA........................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGGAATCAACCAATTTTGCCCA........................................................................................................................................	25	20	0.05	1	0	0	0	1	0
....................................................................................................T----------------TCCACT-TT------GAT-AGC-----------------------------------------------------------------------------------------------------------------------TATAGGTAAG.......................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.......CTTTC-GG-A-------------------------------AAC-------------------ATTAG---CCTTTTTAG--CT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................AGGAA-------A----GAGTTA-----------------------------------------------------------------------------------CCAA--AAATGTTGCA...............................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGGAATCAACCAATTTTGCCCAT.......................................................................................................................................	26	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................TAAGGAA-------A----GAGTTA-----------------------------------------------------------------------------------CCAA--AAATGTTGC................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0

droVir3

TTTTGT-TTATC-AA-AC------------------------ACGGCATTC------------AGTAG-TTTTAC---TATGCTCCT--CATATATATGCAAG------------ATC-------CTATTAAGATCGGACCACTAAATCATATAGCTG----------CCATAGGAAC---AATCGGTAGAAAA-TTA---AGTTTTTGTATGACA---AACATTTTGTTTATCAAGATATCTTGACCAAATTCGGTATTTATT-----------------------------------------------------------------A------------------------GTTTTACTATACTCCTCA------TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---TGCAAGATCCTA--TTAAGATC----GGACTAC--------TAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................TG----------CCATAGGAAC---AATCGGTAGAAAA-T...............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	11	1.82	20	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	14	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TG----------CCATAGGAAC---AATCGGTAGAAAA-TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	11	1.45	16	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TG----------CCATAGGAAC---AATCGGTAGAAAA-................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	11	1.18	13	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................G----------CCATAGGAAC---AATCGGTAGAAAA-T...............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	11	0.45	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TG----------CCATAGGAAC---AATCGGTAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.29	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TG----------CCATAGGAAC---AATCGGTAGAAAA-TTA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................TAGCTG----------CCATAGGAAC---AATCGGTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TG----------CCATAGGAAC---AATCGGTAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	17	0.12	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TG----------CCATAGGAAC---AATCGGTAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	18	0.11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TCCTCA------TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---TGCAAGATCCTA--T.............................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................G----------CCATAGGAAC---AATCGGTAGAAAA-TTA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................	27	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................G----------CCATAGGAAC---AATCGGTAGAAAA-TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....T-TTATC-AA-AC------------------------ACGGCATTC------------AGTAG-TTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TTACTATACTCCTCA------TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---TGCAAGA.....................................	28	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........C-AA-AC------------------------ACGGCATTC------------AGTAG-TTTTAC---TA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTGTATGACA---AACATTTTGTTTAT..........................................................................................................................................................................................................................................................................................................................................................................................................	24	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TC------------AGTAG-TTTTAC---TATGCTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGATC----GGACTAC--------TAT	18	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TAAGATCGGACCACTAAATCATATAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TG----------CCATAGGAAC---AATCGGTAGAAAA-C...............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTTGT-TTATC-AA-AC------------------------ACGGCATTC------------AGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....T-TTATC-AA-AC------------------------ACGGCATTC------------AGTAG-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TCAAGATATCTTGACCAAATTCG....................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................G------------ATC-------CTATTAAGATCGGACCACTAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................ATCGGTAGAAAA-TTA---AGTTTTTGTA................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TTATC-AA-AC------------------------ACGGCATTC------------AGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TAAGATCGGACCACTAAATCATATAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TCCT--CATATATATGCAAG------------ATC-------CT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATCCTA--TTAAGATC----GGACTAC--------T..	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---TGCAAGATCCTA--TTAAGATC----G.................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................ATATATGCAAG------------ATC-------CTATTAAGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TCCTCA------TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---TGCAAGATCC..................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TTGT-TTATC-AA-AC------------------------ACGGCATTC------------AGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TAAGATCGGACCACTAAATCATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TTC------------AGTAG-TTTTAC---TATGCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TCA------TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---TGCAAGATCCTA--..............................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TTTGTATGACA---AACATTTTGTTTATCC........................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTTTTC-CTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCTATTGGA------ACTGCCA-------CAGT---TTCAGGACATCA--TTAAGATA---AAGACAAT--------TGG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

ACTCTA-AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTAGCTGCTGGA------ATTGCCA-------CAAT---TCCAGGACATAA--TTAAAATC---AAGACCAT--------TGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_11423

2l:20921145-20921294 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-27.6	-27.6	-27.6