ID:dsi_11416 |
Coordinate:2r:5378076-5378225 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -42.1 | -41.7 | -41.6 |
 |
 |
 |
exon [2r_5377869_5378075_+]; CDS [2r_5377869_5378075_+]; Antisense to three_prime_UTR [2r_5378080_5378153_-]; Antisense to CDS [2r_5378154_5378379_-]; Antisense to exon [2r_5378080_5378379_-]; intron [2r_5378076_5378947_+]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GATCTTGCCGTTTAACCAAGTTGTCAAGACAGGACAAGACAGTAAATTTGGTACGTTTTGAAAGGGTCTTAAAAGATGATTTATTTCAATGTCAATCACACGATAAATTTGCTAAAATGCATCGTGTTTCACACCGAAAAGGGTGTGGGCTCGACGTGTTCACCATCGGCGTTATCCTCAGGCGCCCGAGCCGTTGCCATCGATGTGGATGCAACCGGCTTCTGCACATCATTATCATCCACAACATTGC **************************************************..((((..(((((.((((.........))))..))))))))).....(((((((..((((....))))..)))))))..((((((......))))))(((..((((.((((......((((((.......)))))).)))))))))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M053 female body |
M024 male body |
SRR902009 testis |
M023 head |
SRR553485 Chicharo_3 day-old ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
M025 embryo |
O002 Head |
GSM343915 embryo |
SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................TCAAGACAGGACAAGACAGTAAATT.......................................................................................................................................................................................................... | 25 | 0 | 1 | 3.00 | 3 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........GTTTAACCAAGTTGTCAAGAC............................................................................................................................................................................................................................ | 21 | 0 | 1 | 2.00 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................TCGATGTGGACGAAAGCGGCT.............................. | 21 | 3 | 1 | 2.00 | 2 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............CCAAGTTGTCAAGACAGGAC....................................................................................................................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| GATCTTGCCGTTTAA........................................................................................................................................................................................................................................... | 15 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............AACCAAGTTGTCAAGACAGGACA...................................................................................................................................................................................................................... | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................GATGTGGATGCAACCGGC............................... | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................GTTGTCAAGACAGGACAAGACA................................................................................................................................................................................................................. | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................AAGTTGTCAAGACAGGACA...................................................................................................................................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................TCAAGACAGGACAAGACAGTA.............................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............AACCAAGTTGTCAAGACAGGAC....................................................................................................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................AAGACAGGACAAGACAGT............................................................................................................................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................ACAGGACAAGACAGTAAATTTGGC...................................................................................................................................................................................................... | 24 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................AGGAAGGACAAGACAGTAAATTTGGTAC.................................................................................................................................................................................................... | 28 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................GACAAGACAGTAAATTTG........................................................................................................................................................................................................ | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...................................................................................................................................CACCGAAAAGGGTGTGGGCT................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............AACAAAGTTGTAAAGACAGGACA...................................................................................................................................................................................................................... | 23 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............TAACCAAGTTGTCAAGACAGGACA...................................................................................................................................................................................................................... | 24 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................AAATGGTGTGGGCTCGACGTGTTC......................................................................................... | 24 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................TCAAGACAGGACAAGACAGTAAATTTG........................................................................................................................................................................................................ | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...CTTGCCGTTTAACCAAGTTGT.................................................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........CGTTTAACCAAGTTGTCAAGA............................................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................TCAAGACAGGACAAGACAGTAAATTA......................................................................................................................................................................................................... | 26 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................TCAAGACAGGACAAGACAGTAAATTT......................................................................................................................................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........CGTTTAACCAAGTTGTCAAGACAGGACA...................................................................................................................................................................................................................... | 28 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................AAGACAGGACAAGACAGTAAAT........................................................................................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................CAAGACAGGACAAGACAGTAAATTT......................................................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................CACCGAAAAGGGTGTGGGCTCGA................................................................................................ | 23 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................CGAAAATGGTGTGGGCTCGA................................................................................................ | 20 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................AAGTTGTCAAGACAGGACAAG.................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .........GTTTAACCAAGTTGTCAAGA............................................................................................................................................................................................................................. | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........GTTTAACCAAGTTGTCAAGACAGGACA...................................................................................................................................................................................................................... | 27 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................GTCAAGACAGGACAAGACA................................................................................................................................................................................................................. | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................GTATCCTAAGGCGCTCGAG............................................................ | 19 | 3 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................ATTTACTCCGAAAAGGGTGT........................................................................................................ | 20 | 3 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...........................................................................................................................................................................................GAGGCGTTGCCATCGA............................................... | 16 | 1 | 8 | 0.13 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .......................................................................................................................................................................................................TCGATGTGGACGAAAGCGGC............................... | 20 | 3 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................GATGATTTATTTCACTGGC............................................................................................................................................................. | 19 | 2 | 10 | 0.10 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................TAAAAGCTGATTTAACTCAAT................................................................................................................................................................ | 21 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....TTGACGTTTACCCAAGATG................................................................................................................................................................................................................................... | 19 | 3 | 16 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................GCCATTGCTGTGGAAGCAAC................................... | 20 | 3 | 16 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .............AACCAAGTCGTCAAGTCC........................................................................................................................................................................................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ------------------------------------------------------#################################################################################################################################################################################################### CTAGAACGGCAAATTGGTTCAACAGTTCTGTCCTGTTCTGTCATTTAAACCATGCAAAACTTTCCCAGAATTTTCTACTAAATAAAGTTACAGTTAGTGTGCTATTTAAACGATTTTACGTAGCACAAAGTGTGGCTTTTCCCACACCCGAGCTGCACAAGTGGTAGCCGCAATAGGAGTCCGCGGGCTCGGCAACGGTAGCTACACCTACGTTGGCCGAAGACGTGTAGTAATAGTAGGTGTTGTAACG **************************************************..((((..(((((.((((.........))))..))))))))).....(((((((..((((....))))..)))))))..((((((......))))))(((..((((.((((......((((((.......)))))).)))))))))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
SRR902008 ovaries |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................CCCGAGCTGCACAAGTGGTA.................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................AGTTACAGTTAGTGTCTTAAT................................................................................................................................................ | 21 | 3 | 7 | 0.14 | 1 | 0 | 1 | 0 |
| .............................................................................................TTAGTGGGCTATTCAAACCAT........................................................................................................................................ | 21 | 3 | 9 | 0.11 | 1 | 0 | 0 | 1 |
| .....................CCCGTTCTGTGCTGTTCTGT................................................................................................................................................................................................................. | 20 | 3 | 11 | 0.09 | 1 | 1 | 0 | 0 |
| .......................................................................................TTACATTTTGTTTGCTATTTAA............................................................................................................................................. | 22 | 3 | 17 | 0.06 | 1 | 1 | 0 | 0 |
| ...........................................................................................................................................................CCCAAGTCGTATCCGCAA............................................................................. | 18 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 |
Generated: 04/23/2015 at 01:36 PM