ID:

dsi_11408

 Coordinate:

2l:9465539-9465688 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.6 -24.4 -24.4 -24.1

Flybase annnotation

CDS [2l_9465260_9465538_+]; exon [2l_9464869_9465538_+]; intron [2l_9465539_9469164_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCAACAGCAGCAGCAGCAGCAGCAGCAGCAATCGAACAACAATAACGAGGTAAGTGGCCGAAAGAAAAGAAAGCTTGTAAGCGATTGTGACGTCAATGAGGATTGGGGCAACGCATCCACATCCGCGTAGAAAGCCAACTTGCAGAGAAAGTGACCAAAAAAATATAAGTAAGACAGTCGAAAAAAGCATACGGGGTGCTGGTAAACTCCGACTCCGGGTCGTGAATGACGTCTGTTTGTTGTGGACAC
**************************************************((......(((............((((.....(((((((....((..(((((.((((....((((..........))))......))))))).))..)).........................)))))))....))))...)))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
...................................................TAAGTAGCCGGAGGAAAAGAAA................................................................................................................................................................................. 22 3 3 1.00 3 3 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCGTGAATGACGTCTGTTTGT......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................AGCTTGTAAGCGATTGTGACGTC........................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................ATGAGTCAGACTGTCGAAAAA................................................................ 21 3 2 0.50 1 0 0 0 1 0 0 0 0
......................GCAGCAGCAATCGAACA................................................................................................................................................................................................................... 17 0 2 0.50 1 0 0 0 1 0 0 0 0
........................................CAATAACGAGGTAAG................................................................................................................................................................................................... 15 0 2 0.50 1 0 0 0 0 1 0 0 0
................................................................................................................................................................................................CGGGGAGCTGGTAAAC.......................................... 16 1 5 0.20 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................ATATAAGTAACACAGTGG..................................................................... 18 2 5 0.20 1 0 0 0 0 0 1 0 0
........................................................GGCCGAACGAAAAGA................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 0 0 1 0 0
...........CAGCAGCAGCAGCAGCAGCAACCGA...................................................................................................................................................................................................................... 25 1 19 0.05 1 0 0 0 0 0 0 0 1
.............................................................AAAGAGAAGAAAGGCTGTAA......................................................................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 1 0
AGCAACAGCAGCAGC........................................................................................................................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 1 0 0 0
............................................................GAAAGAAAAGGAAGCT.............................................................................................................................................................................. 16 1 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................TGGGGATTGGGGTAACG........................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

TCGTTGTCGTCGTCGTCGTCGTCGTCGTCGTTAGCTTGTTGTTATTGCTCCATTCACCGGCTTTCTTTTCTTTCGAACATTCGCTAACACTGCAGTTACTCCTAACCCCGTTGCGTAGGTGTAGGCGCATCTTTCGGTTGAACGTCTCTTTCACTGGTTTTTTTATATTCATTCTGTCAGCTTTTTTCGTATGCCCCACGACCATTTGAGGCTGAGGCCCAGCACTTACTGCAGACAAACAACACCTGTG
**************************************************((......(((............((((.....(((((((....((..(((((.((((....((((..........))))......))))))).))..)).........................)))))))....))))...)))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
..........................................................................................................................AGGCGCATCTTTCGGTTGAACGTCT....................................................................................................... 25 0 1 1.00 1 1 0 0 0
......................................................................................................................................CGGTTGAACGTCTCTTTCACTGGTT........................................................................................... 25 0 1 1.00 1 0 1 0 0
....................................................................................................................................................................ATATTCATTCTGTCAGCTT................................................................... 19 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................TTGAGGCTGCGGCCCA............................. 16 1 1 1.00 1 0 1 0 0
.................GTCGTCGTCGTCGTTAGCTTGT................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
......................CGTCGTCGTTAGCTTGTTGTTA.............................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0
........................................................................................................................GTAGGCGCATCTTTCGGTTGAACGTCT....................................................................................................... 27 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................TTTTTATATTCATTCTGTCAGCTT................................................................... 24 0 1 1.00 1 0 1 0 0
...............TCATCATCGTCGCCGTTAGCTT..................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0
.......................................................ACCAGTTATCTTTTCTTTCGA.............................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 1
........................................................................................................................................................AGTGGTTCTTTTATATTC................................................................................ 18 2 13 0.08 1 0 1 0 0
..............................................................................................................................................TGTCTCTTTCAGTGGTTTCT........................................................................................ 20 3 16 0.06 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:9465489-9465738 + dsi_11408 AGCAACAGCAGC--------AGCAGCAG---C---------------AGCAGCAG---------------------CAATCGA---------------------ACAACAATAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--ATTGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAA------------------------------T-----ATAAG----------------------TAAGACAG--T--CGAAAAAAGCATACGGGGTGCT----------------------------GGTAAACTCCGAC------T----------------------------------------------CCGGGTCG------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTGG-------ACAC
droSec2 scaffold_3:5230421-5230664 + AGCAACAGCAGC--------AGC------------------------AGCAGCAG---------------------CAATCGA---------------------ACAACAATAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--ATTGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGAATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAA------------------------------T-----ACAAG----------------------TAAGACAG--T--CGAAAAAAGCATACGGGGTGCT----------------------------GGTAAACTCCGAC------T----------------------------------------------CCGGGTCG------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTGG-------AAAC
dm3 chr2L:9783014-9783267 + AGCAACAGCAGC--------AACAGCAG---C---------------AGCAGCAG---------------------CAATCGA---------------------ACAACAATAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--ATTGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAA------------------------------T-----ATAAG----------------------TAAGACAG--T--CGAAAAAAGCATACGGGGTGCT----------------------------GGTAAACTCCGAC------T----------------------------------------------CCGGATCG------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTGGAC---GGACAC
droEre2 scaffold_4929:10395043-10395279 + AGCAACAGCAGC--------AG---------------------------CAGCAG---------------------CAATCGA---------------------ACAACAATAACGAGGTAAGTAGCC-GAAAGAAAAGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--ATTGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAAA---A---AAAAATAA---------A----T-----ACAAG----------------------TAAGACAG--------------------------T----------------------------GGTAAACTCCGAC------T----------------------------------------------CCGGGTCG------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTGGACTGTGGACAC
droYak3 2L:12471362-12471631 + dya_301 AGCAACAGCAGC--------AGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAG---------------------CAATCGA---------------------ACAACAATAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--ATTGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-ATGCAGAGAAAG---TGACCAAAAAAAA---A------A---A--CC---AAA----T-----ATAAG----------------------TAAGACAT--T--CGAA-------------GTGCT----------------------------GGTAAACTTCGAC------T----------------------------------------------TCGGGTGG------------------------------------------------TGA-ATGACGTCTG-------------TG-----T---CTGTTTGTTGTGG-------ACAC
droEug1 scf7180000409554:5144817-5145107 - AGCAGCAGCAAC--------AGCAGCAG---C---------------AGCAGCAG---------------------CAATCAA---------------------ACAATAACAACGAGGTAAGTGACC-GACAGAAAAGAAAGC-TTGTAAGAC---A----C--AAACAAA--------------CACAAC--AACCCAACCAACCAAC-------------------------CGATAAAGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAAA---A------A---A----------------------------C----AGACAAAAAGCATACAAAAAAGAGTTAC--------------------G------------------AAGT-GGTGT-TTAAACTCTGAC------TC---------------------------------------------CCGGGCCT------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTTC-------ATAT
droBia1 scf7180000302408:3366131-3366412 - AGCAGCAGCAGC--------AAC------------------------AGCAGCAG---------------------CAATCGA---------------------ACAATAACAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAGCG---C----C--AAGCAAA--------------C-------------------CCAC-------------------------CGGGGCGGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAAGGCAAGCAA--A---A--T-------------------------C----AGACGGAAAGCACACAAAACCGAGCCAT--------------------G-------------GAGTGGGGTTTGTGTGGTAAACTCCGAT------T----------------------------------------------CCGGGCCC------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTTG-------ATAC
droTak1 scf7180000415880:60485-60724 - AGCAACAGCAG-----------------------------------------CAG---------------------CAATCGA---------------------ACAATAACAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAGC---------------------------------------------------------------------------------------TGGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAAA---ACCGA--A---A--T-------------------------CCGACGACGAAAAAGCATACAAAACAGAGTTAC--------------------C--------------------------GA-GCAAACTCCAGT------T----------------------------------------------CCGGGCCT------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTGG-------ACCC
droEle1 scf7180000491186:2820211-2820490 + AGCAACAGCAGC--------AGCAGCAG---CAGCAACAACACCAGCAGCAACAGCAGCAGCAAAAGCAGCAGCAACAATCGA---------------------ACAATAACAACGAGGTAAGTGGCC-GAATGAAAAGAAAGC-TTGTAAGAC---A----C--AAGCAAA--------------C----------------------------------------------------AGAGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAACCAC-TGGCAGAGAAAG---TGACCAAAAAAAA---A---G-----------------------------------------------------------CAGAGTTAC--------------------G-------------TTGCGGAGT-CGTGT-GTAAACTCCG------------------------------------------------------------CCT------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTTGTG-------GAAT
droRho1 scf7180000778085:141046-141311 - AGCAACAGCAAC--------AGC------------------------AGCAGCAG---------------------CAATCGA---------------------ACAATAACAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAGAC---A----C--AAGCAAA--------------C----------------------------------------------------ATAGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAACCAC-TGACAGAGAAAG---TGACCAAAAAAAA---A---GGCG--------------CAGA-----------CAAC----AGACAA--------TAAGACAGAGTTAC--------------------G-------------TTGCGGAGT-CGTGT-GTAAGCTCCGAC------T----------------------------------------------CCGGATAT------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGATGTGG-------A--T
droFic1 scf7180000454144:187005-187277 + AGCAA--GCAG---------AAC------------------------AGCAGCAG---------------------CAATCGA---------------------ACAATAACAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAGAC---A----T--AAGCAAA--------------C-------------------C-A--------------------------C----GAGTGACGTCAATCGAGG----------ATTGG-G----------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAATA---A------A---A--C------------------CAAG--GC----AGACAAAAAGCTT-TA----ACAGTTAC--------------------G-------------CGGCGGGGT-CGTGT-GTAAACTCCGACTCCGACT----------------------------------------------CCGGGTCT------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGCTG-------AAAT
droKik1 scf7180000302472:2152774-2153048 + AGCAACAGCAGC--------AGC------------------------------AG---------------------CAGTCGA---------------------ACAATAACAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAGCC---G----C--AAGCAAA--------------C-------------------TGT---------------------G-----C--AGAGTGACGTCAAT-TGGT---GTGGAGGATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAAACAC-TTGCAGAGAAAG---TGGCCAAAAAAAGGCAG---AGAAATAATAACAATAAA----TAAAAGACAAGCGAC----AGACAA-------------------------------------AGGGCC--------------------------GG-ACAAACTCCGTTTCCGACTCCG-------------------------------------------CCGGGCCT------------------------------------------------TGG-ATGACGTCTG---------------------------TG------------------C
droAna3 scaffold_12943:1222775-1223025 + dan_917 AGCAACAGCAGC--------AGC------------------------AGCAACAA---------------------CCATCGA------TCGGTGGCAACAACAATAATAATAACGAGGTAAGTAACC-GACA-AAAAGAAAGCGTTGTAAGAG---G----C--AAACAAAA-AC---CGACAA------A-----------AACCAA--------------------------CG--AAAGTGACGTCAAT-GAGG----------ATTGGTG----------GGGCAACGAGTTCATATCCGCATAGAAAGC-------------------CAC---CGAAGCAGAGAAAG---TGACCAAAAAGA-----------------------------------------------------------------------------------------------GCT--------------------G--TGTGT-GTAAACTCTGTT------T----------------------------------------------CCAGGCCT------------------------------------------------TGA-ATGACGTCTG---------------------------TTTG-----------------
droBip1 scf7180000396728:1975154-1975411 - AGCAACAGCAGC--------AAC------------------------AGCAACAA---------------------CCATCGA------TCGGTGGCAACAACAATAATAATAACGAGGTAAGTAACC-GACA-AAAAGAAAGCGTTGTAAGAG---G----C--AAACAAAA-AC---CGACCAA-----AAAAATAA----AACCAA--------------------------CG--AAAGTGACGTCAAT-GAGG----------ATTGGTG----------GGGCAACGCGTTCATATCCGCATAGAAAGC-------------------CAC---CGAAGCAGAGAAAG---TGACCAAAAAGA-----------------------------------------------------------------------------------------------GC------------------------TGTGT-GTAAACTCTGTT------T----------------------------------------------CCAGGCCT------------------------------------------------TGATATGACGTCTG---------------------------TTTG-----------------
dp5 4_group3:388171-388470 - AGCAGCAGCAGC--------AGCAGCAG---C---------------AGCAGAAG---------------------CAATCGAAATCTGTTGGTCGCAACAACAATAACAACCATGAGGTGAGTGCCC-GA--CAAAAGAAAGC-TTGTAATATT-GG----TAC-CACAAAAGA----------------------CA----AACCAAC-------------------------CG--ACAGTGACGTCAAT-GGCGATGGTGGAGGATTG----TCT----------TGTCCGTCCACATCCGCGTAGAAAGC-------------------AAC---A-CTCCAGAGAAAG---TGGCCGAAAAAGA---G---AGAGATAC--AC---ATA----T-----ATAT---------------------------------------------------------------------------------------GTATACTC--------------------------------------ATGACCGAGGTATGGTT--ATGGGTCCA-----------------------------------------------GGA-ATGACGTCTG-------------CGGGGAGT------TTTGTTT--------------
droPer2 scaffold_1:1864021-1864311 - AGCAGCAGCAGC--------AG---------------------------CAGAAG---------------------CAATCGAAATCTGTTGGTCGCAACAACAATAACAACCATGAGGTGAGTGCCC-GA--CAAAAGAAAGC-TTGTAATATT-GG----TAC-CACAAAAGA----------------------CA----AACCAAC-------------------------CG--ACAGTGACGTCAAT-GGCGATGGTGGAGGATTG----TCT----------TGTCCGTCCACATCCGCGTAGAAAGC-------------------AAC---A-CTCCAGAGAAAG---TGGCCGAAAAAGA---G---AGAGATAC--AC---ATA----T-----ATAAG----------------------TA-----------------------------------------------------------------TACTC--------------------------------------ATGACCGAGGTATGGTT--ATGGGTCCA-----------------------------------------------GGA-ATGACGTCTG-------------CGGGGAGT------TTTGTTT--------------
droWil2 scf2_1100000004585:8424109-8424361 + GACAA---------------------------------------------------------------------------------------------------------------------------------GAAAGAAAGC-TTAAAA------------------------------------------------------------------------------------------TATGACGTCAAT-GGAGAGG-------GTTGATTGCTTCGCTTTGG--------TCAACATCCGCGTAGAAAGCCCCTCCCCTCATTTTGTTTCAT---TGCAACAGAGAAAG---TGACCAAAAAAATACGA-----AAAAGA--T--------------------------------------------TA----AT--------------------AA--------AT-G---------------------------CCCC-----------AAAAGATCTTACACAAAATTTGTTAT----------------ATA-TAGGTATATATACAATATATACACATAGGTATTCGACAAACAAAAAAATTAAATGCCA-ATGACGTCTG---------------------------TAGG-----------------
droVir3 scaffold_12963:1831521-1831836 - dvi_10066 AGCAGCAGCCC---AAAACCAGCAGCAG---CAGCAACAACAATAACAACAACAACGAC-----------------------------------------AACAACAGTAATGCTGAGGTAAGTAACC-GA----AAAGAAAGC-TAACAAGGGGGAGTGAGTAAAAACAAAA-ACAAA-------A------------------ACAGCAAAA-------------TATTAAGA-GAGGTTATGACGTCAAT-T------------------------------GGGCGACA-ATATACATCCGCGTAGAAAGC-------------------AAC--GT-AAGCAGAGAAAGTAGTGACCCAAAGACT---G---AGCA--------------C-----------------------------------CTACCCCTCCGCCAC--------------------CTAGCCCAATCTATCTGCGGGCA-CATGA-CTAAAC--------------------------------------------------CTTTTAATTCCAA--------------------------------------------------------ACAATGCCGGGCA-------------------------TTATCT-TA-------AGCA
droMoj3 scaffold_6500:28777729-28778038 - AGCACCAGCAGCCAAA----AG---------------------------C---------------------------AACCAGCAA-------CTGCAACAACAACACCAACACTGAGGTAAGTAACC-AA----AAAGAAAGC-TAGCAAGGG--AG----CA-AAACAAAA-ACAAA-------AACAAA--AATC--------GAGCAAAAAATTACTGTTGAGCACTAAGA-GAGCTTATGACGTCAAT-TGGG-----------CAG-------------GGGCAATACAC------GGATGTAGCAA-----------------------C--GC-AGGCAGAGAAAG---TGACCCAAAGACG---C---AGCAAAAC--T--------------------------------------------CA----CA--------------------AG--------CC-A---------------------------CCCC-----------AGCCCACCCTTCGCGC-ACATGTCACATGAATAAGCCCATTCATTCCGT--------------------------------------------------------ACAATATCTGGCA-------------------------TTATCTTAA-------GCAC
droGri2 scaffold_15126:6702616-6702928 + AGCAGCCGAAA------ACCAACAGCAG---CGACAGCAACACCAACAGCAACAACAAT------------------AA--TA---------------------ACAACAATACTGAGGTAAGTAACCTGGCCAAAAAGAAAGC-TTACAAGGGGAGG----CA-AAACAAAA--C----AAC-AA-----AAAAATAA----------------------------TAATAAGACG--GCTCTGACGTCAAT-TGAG----------AGC--------------CAATAGCGCAGACACATCCGTGTAGAAAGC-------------------AAA-CGC-GAGCAGAGAAAG---TGACCCAAAGACA---C--------------------------------------------------------------------------------CCTACAATTTC------------------------------------CTCCAGC------T-----CT----------------TCTCATGACTAAACCTTCACATCCAGT-CA---------------------------------------------------A-ATATTTTTAAACTTTATCTCTGGCAAAAAATCGTCTGT--------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCAACAGCAGC--------AGCAGCAG---C---------------AGCAGCAG---------------------CAATCGA---------------------ACAACAATAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--ATTGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAA------------------------------T-----ATAAG----------------------TAAGACAG--T--CGAAAAAAGCATACGGGGTGCT----------------------------GGTAAACTCCGAC------T----------------------------------------------CCGGGTCG------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTGG-------ACACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGT................2111.00110000000000000000
.............................................................................................................................................AGC-TTGTAAG-----------------------------------------------------------------------------------CG--ATTGTGACGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
................................................GCAGCAG---------------------CAATCGA---------------------ACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.50100000001000000000
............................................................................................................CAATAACGAGGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
AGCAACAGCAGC--------AGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
droSec2
AGCAACAGCAGC--------AGC------------------------AGCAGCAG---------------------CAATCGA---------------------ACAACAATAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--ATTGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGAATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAA------------------------------T-----ACAAG----------------------TAAGACAG--T--CGAAAAAAGCATACGGGGTGCT----------------------------GGTAAACTCCGAC------T----------------------------------------------CCGGGTCG------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTGG-------AAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................CAACAATAACGAGGTAAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.GCAACAGCAGC--------AGC------------------------AGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
dm3
AGCAACAGCAGC--------AACAGCAG---C---------------AGCAGCAG---------------------CAATCGA---------------------ACAACAATAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--ATTGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAA------------------------------T-----ATAAG----------------------TAAGACAG--T--CGAAAAAAGCATACGGGGTGCT----------------------------GGTAAACTCCGAC------T----------------------------------------------CCGGATCG------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTGGAC---GGACACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................C---------------AGCAGCAG---------------------CAATCGA---------------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCGAC------T----------------------------------------------CCGGATCG------------------------------------------------TGA-ATGACGT...................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AGCAG---C---------------AGCAGCAG---------------------CAATCGA---------------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TAAG-----------------------------------------------------------------------------------CG--ATTGTGACGTCAAT-G........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GCATCCACATCCGCGTAGAAA..............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................T-GAGG----------ATTG-------------GGGCAACGCATC..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................AGTGGCC-GAAAGAAAAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................AAGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--ATTGTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................CAAT-GAGG----------ATTG-------------GGGCAACGCAT...............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................AGCAGCAG---------------------CAATCGA---------------------ACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................G--ATTGTGACGTCAAT-GAGG----------ATTG-------------GGG.......................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................ATCGA---------------------ACAACAATAACGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................AAAAAAA------------------------------T-----ATAAG----------------------TAAGACAG--T--..........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
..................................................................................A---------------------ACAACAATAACGAGGTAAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTG---------------------------TTTGTTGTGGAC---GGACA.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGTGACGTCAAT-GAGG----------ATTG-------------G.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TGACGTCAAT-GAGG----------ATTG-------------GGGCAACGC.................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAG--T--CGAAAAAAGCATA.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................G---------------------CAATCGA---------------------ACAACAATAACGAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................CAGCAG---------------------CAATCGA---------------------ACAACAATAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................GAAAGAAAAGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---T.................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................AAGAAAAGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--AT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................CCACATCCGCGTAGAAAGC-------------------CA.......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-ATGACGTCTG---------------------------TTTGTTGTGGAC---GGACA.3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................CAATAACGAGGTAAGTGGCC-G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TCAAT-GAGG----------ATTG-------------GGGCAACGCATC..............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CATCCACATCCGCGTAGAAAG.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................CAAT-GAGG----------ATTG-------------GGGCAACGC.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................AGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--ATTGTGACGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................AAGTGGCC-GAAAGAAAAGAAAGC-T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTG..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------T----------------------------------------------CCGGATCG------------------------------------------------TGA-ATGACGT...................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AAGC-------------------CAA---C-TTGCAGAGAAAG---..................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..CAACAGCAGC--------AACAGCAG---C---------------AG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.55110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000070000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AAGC-------------------CAA---C-TTGCAGAGAAAA---A.................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........CAGC--------AACAGCAG---C---------------AGCAGCAG---------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000100000000000000000000000000000000000000000000000010000000000000000
....................AACAGCAG---C---------------AGCAGCAG---------------------CAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CAACAGCAGC--------AACAGCAG---C---------------AGCAGCAG---------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAGC--------AACAGCAG---C---------------AGCAGCAG---------------------CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000100000000000000000000000000
..CAACAGCAGC--------AACAGCAG---C---------------AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droEre2
AGCAACAGCAGC--------AG---------------------------CAGCAG---------------------CAATCGA---------------------ACAACAATAACGAGGTAAGTAGCC-GAAAGAAAAGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--ATTGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAAA---A---AAAAATAA---------A----T-----ACAAG----------------------TAAGACAG--------------------------T----------------------------GGTAAACTCCGAC------T----------------------------------------------CCGGGTCG------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTGGACTGTGGACACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTG---------------------------TTTGTTGTGGACTGTG.....2111.0010000010
...AACAGCAGC--------AG---------------------------CAGCAG---------------------CAATCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000010
AGCAACAGCAGC--------AG---------------------------CAGCAG---------------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
droYak3
AGCAACAGCAGC--------AGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAG---------------------CAATCGA---------------------ACAACAATAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAG-----------------------------------------------------------------------------------CG--ATTGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-ATGCAGAGAAAG---TGACCAAAAAAAA---A------A---A--CC---AAA----T-----ATAAG----------------------TAAGACAT--T--CGAA-------------GTGCT----------------------------GGTAAACTTCGAC------T----------------------------------------------TCGGGTGG------------------------------------------------TGA-ATGACGTCTG-------------TG-----T---CTGTTTGTTGTGG-------ACACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................AGCAG---------------------CAATCGA---------------------ACAACAATAACGAGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT----------------------------GGTAAACTTCGAC------T----------------------------------------------TCGGGTGG------------------------------------------------T.............................................................2611.00100000010000
.....................................................AG---------------------CAATCGA---------------------ACAACAATAACGAGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
........................................................................................................................AAGTGGCC-GAAAGAAAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACTTCGAC------T----------------------------------------------TCGGGT................................................................................................................1911.00100100000000
..CAACAGCAGC--------AGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10201010000000
AGCAACAGCAGC--------AGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10202000000000
.................................GCAGCAGCAGCAACAGCAGCAG---------------------CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
................................AGCAGCAGCAGCAACAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
...AACAGCAGC--------AGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
................................AGCAGCAGCAGCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010000000
......AGCAGC--------AGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010000000
AGCAACAGCAGC--------AGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
.GCAACAGCAGC--------AGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
droEug1
AGCAGCAGCAAC--------AGCAGCAG---C---------------AGCAGCAG---------------------CAATCAA---------------------ACAATAACAACGAGGTAAGTGACC-GACAGAAAAGAAAGC-TTGTAAGAC---A----C--AAACAAA--------------CACAAC--AACCCAACCAACCAAC-------------------------CGATAAAGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAAA---A------A---A----------------------------C----AGACAAAAAGCATACAAAAAAGAGTTAC--------------------G------------------AAGT-GGTGT-TTAAACTCTGAC------TC---------------------------------------------CCGGGCCT------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTTC-------ATATSizeHit CountTotal NormTotal
No Reads
droBia1
AGCAGCAGCAGC--------AAC------------------------AGCAGCAG---------------------CAATCGA---------------------ACAATAACAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAGCG---C----C--AAGCAAA--------------C-------------------CCAC-------------------------CGGGGCGGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAAGGCAAGCAA--A---A--T-------------------------C----AGACGGAAAGCACACAAAACCGAGCCAT--------------------G-------------GAGTGGGGTTTGTGTGGTAAACTCCGAT------T----------------------------------------------CCGGGCCC------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTTG-------ATACSizeHit CountTotal NormTotal
No Reads
droTak1
AGCAACAGCAG-----------------------------------------CAG---------------------CAATCGA---------------------ACAATAACAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAGC---------------------------------------------------------------------------------------TGGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAAAA---ACCGA--A---A--T-------------------------CCGACGACGAAAAAGCATACAAAACAGAGTTAC--------------------C--------------------------GA-GCAAACTCCAGT------T----------------------------------------------CCGGGCCT------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGTGG-------ACCCSizeHit CountTotal NormTotal
No Reads
droEle1
AGCAACAGCAGC--------AGCAGCAG---CAGCAACAACACCAGCAGCAACAGCAGCAGCAAAAGCAGCAGCAACAATCGA---------------------ACAATAACAACGAGGTAAGTGGCC-GAATGAAAAGAAAGC-TTGTAAGAC---A----C--AAGCAAA--------------C----------------------------------------------------AGAGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAACCAC-TGGCAGAGAAAG---TGACCAAAAAAAA---A---G-----------------------------------------------------------CAGAGTTAC--------------------G-------------TTGCGGAGT-CGTGT-GTAAACTCCG------------------------------------------------------------CCT------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTTGTG-------GAATSizeHit CountTotal NormTotal
No Reads
droRho1
AGCAACAGCAAC--------AGC------------------------AGCAGCAG---------------------CAATCGA---------------------ACAATAACAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAGAC---A----C--AAGCAAA--------------C----------------------------------------------------ATAGTGACGTCAAT-GAGG----------ATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAACCAC-TGACAGAGAAAG---TGACCAAAAAAAA---A---GGCG--------------CAGA-----------CAAC----AGACAA--------TAAGACAGAGTTAC--------------------G-------------TTGCGGAGT-CGTGT-GTAAGCTCCGAC------T----------------------------------------------CCGGATAT------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGATGTGG-------A--TSizeHit CountTotal NormTotal
No Reads
droFic1
AGCAA--GCAG---------AAC------------------------AGCAGCAG---------------------CAATCGA---------------------ACAATAACAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAGAC---A----T--AAGCAAA--------------C-------------------C-A--------------------------C----GAGTGACGTCAATCGAGG----------ATTGG-G----------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAA---C-TTGCAGAGAAAG---TGACCAAAAAATA---A------A---A--C------------------CAAG--GC----AGACAAAAAGCTT-TA----ACAGTTAC--------------------G-------------CGGCGGGGT-CGTGT-GTAAACTCCGACTCCGACT----------------------------------------------CCGGGTCT------------------------------------------------TGA-ATGACGTCTG---------------------------TTTGTTGCTG-------AAATSizeHit CountTotal NormTotal
No Reads
droKik1
AGCAACAGCAGC--------AGC------------------------------AG---------------------CAGTCGA---------------------ACAATAACAACGAGGTAAGTGGCC-GAAAGAAAAGAAAGC-TTGTAAGCC---G----C--AAGCAAA--------------C-------------------TGT---------------------G-----C--AGAGTGACGTCAAT-TGGT---GTGGAGGATTG-------------GGGCAACGCATCCACATCCGCGTAGAAAGC-------------------CAAACAC-TTGCAGAGAAAG---TGGCCAAAAAAAGGCAG---AGAAATAATAACAATAAA----TAAAAGACAAGCGAC----AGACAA-------------------------------------AGGGCC--------------------------GG-ACAAACTCCGTTTCCGACTCCG-------------------------------------------CCGGGCCT------------------------------------------------TGG-ATGACGTCTG---------------------------TG------------------CSizeHit CountTotal NormTotal
No Reads
droAna3
AGCAACAGCAGC--------AGC------------------------AGCAACAA---------------------CCATCGA------TCGGTGGCAACAACAATAATAATAACGAGGTAAGTAACC-GACA-AAAAGAAAGCGTTGTAAGAG---G----C--AAACAAAA-AC---CGACAA------A-----------AACCAA--------------------------CG--AAAGTGACGTCAAT-GAGG----------ATTGGTG----------GGGCAACGAGTTCATATCCGCATAGAAAGC-------------------CAC---CGAAGCAGAGAAAG---TGACCAAAAAGA-----------------------------------------------------------------------------------------------GCT--------------------G--TGTGT-GTAAACTCTGTT------T----------------------------------------------CCAGGCCT------------------------------------------------TGA-ATGACGTCTG---------------------------TTTG-----------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................ATCGA------TCGGTGGCAACAACAATAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
......................................................................................................................................................................AACAAAA-AC---CGACAA------A-----------AAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.051001000
.GCAACAGCAGC--------AGC------------------------AGCAACAA---------------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
droBip1
AGCAACAGCAGC--------AAC------------------------AGCAACAA---------------------CCATCGA------TCGGTGGCAACAACAATAATAATAACGAGGTAAGTAACC-GACA-AAAAGAAAGCGTTGTAAGAG---G----C--AAACAAAA-AC---CGACCAA-----AAAAATAA----AACCAA--------------------------CG--AAAGTGACGTCAAT-GAGG----------ATTGGTG----------GGGCAACGCGTTCATATCCGCATAGAAAGC-------------------CAC---CGAAGCAGAGAAAG---TGACCAAAAAGA-----------------------------------------------------------------------------------------------GC------------------------TGTGT-GTAAACTCTGTT------T----------------------------------------------CCAGGCCT------------------------------------------------TGATATGACGTCTG---------------------------TTTG-----------------SizeHit CountTotal NormTotal
No Reads
dp5
AGCAGCAGCAGC--------AGCAGCAG---C---------------AGCAGAAG---------------------CAATCGAAATCTGTTGGTCGCAACAACAATAACAACCATGAGGTGAGTGCCC-GA--CAAAAGAAAGC-TTGTAATATT-GG----TAC-CACAAAAGA----------------------CA----AACCAAC-------------------------CG--ACAGTGACGTCAAT-GGCGATGGTGGAGGATTG----TCT----------TGTCCGTCCACATCCGCGTAGAAAGC-------------------AAC---A-CTCCAGAGAAAG---TGGCCGAAAAAGA---G---AGAGATAC--AC---ATA----T-----ATAT---------------------------------------------------------------------------------------GTATACTC--------------------------------------ATGACCGAGGTATGGTT--ATGGGTCCA-----------------------------------------------GGA-ATGACGTCTG-------------CGGGGAGT------TTTGTTT--------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................AGAAG---------------------CAATCGAAATCTGTTGGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
...............................................................................................................................................................................................................................................................................................................................................AC---A-CTCCAGAGAAAG---TGGCCGAAAAA.......................................................................................................................................................................................................................................................................................................................2611.0010000001000
.......................AGCAG---C---------------AGCAGAAG---------------------CAATCGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.....................................................................................................................................................................................................................................................ACGTCAAT-GGCGATGGTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...........................................................................................................................................................................................................................................CG--ACAGTGACGTCAAT-GGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....GCAGCAGC--------AGCAGCAG---C---------------AGCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510010000000
.GCAGCAGCAGC--------AGCAGCAG---C---------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510010000000
droPer2
AGCAGCAGCAGC--------AG---------------------------CAGAAG---------------------CAATCGAAATCTGTTGGTCGCAACAACAATAACAACCATGAGGTGAGTGCCC-GA--CAAAAGAAAGC-TTGTAATATT-GG----TAC-CACAAAAGA----------------------CA----AACCAAC-------------------------CG--ACAGTGACGTCAAT-GGCGATGGTGGAGGATTG----TCT----------TGTCCGTCCACATCCGCGTAGAAAGC-------------------AAC---A-CTCCAGAGAAAG---TGGCCGAAAAAGA---G---AGAGATAC--AC---ATA----T-----ATAAG----------------------TA-----------------------------------------------------------------TACTC--------------------------------------ATGACCGAGGTATGGTT--ATGGGTCCA-----------------------------------------------GGA-ATGACGTCTG-------------CGGGGAGT------TTTGTTT--------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GACAA---------------------------------------------------------------------------------------------------------------------------------GAAAGAAAGC-TTAAAA------------------------------------------------------------------------------------------TATGACGTCAAT-GGAGAGG-------GTTGATTGCTTCGCTTTGG--------TCAACATCCGCGTAGAAAGCCCCTCCCCTCATTTTGTTTCAT---TGCAACAGAGAAAG---TGACCAAAAAAATACGA-----AAAAGA--T--------------------------------------------TA----AT--------------------AA--------AT-G---------------------------CCCC-----------AAAAGATCTTACACAAAATTTGTTAT----------------ATA-TAGGTATATATACAATATATACACATAGGTATTCGACAAACAAAAAAATTAAATGCCA-ATGACGTCTG---------------------------TAGG-----------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................TAAAA------------------------------------------------------------------------------------------TATGACGTCAAT-GGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
droVir3
AGCAGCAGCCC---AAAACCAGCAGCAG---CAGCAACAACAATAACAACAACAACGAC-----------------------------------------AACAACAGTAATGCTGAGGTAAGTAACC-GA----AAAGAAAGC-TAACAAGGGGGAGTGAGTAAAAACAAAA-ACAAA-------A------------------ACAGCAAAA-------------TATTAAGA-GAGGTTATGACGTCAAT-T------------------------------GGGCGACA-ATATACATCCGCGTAGAAAGC-------------------AAC--GT-AAGCAGAGAAAGTAGTGACCCAAAGACT---G---AGCA--------------C-----------------------------------CTACCCCTCCGCCAC--------------------CTAGCCCAATCTATCTGCGGGCA-CATGA-CTAAAC--------------------------------------------------CTTTTAATTCCAA--------------------------------------------------------ACAATGCCGGGCA-------------------------TTATCT-TA-------AGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................CGAC-----------------------------------------AACAACAGTAATGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
...AGCAGCCC---AAAACCAGCAGCAG---CAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000100000000000000000000000000000000000000000000000
..........................AG---CAGCAACAACAATAACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102001000000000000000000010000000000000000000000000000000000000000
................AACCAGCAGCAG---CAGCAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.091001000000000000000000000000000000000000000000000000000000000000
.....................GCAGCAG---CAGCAACAACAATAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.061000100000000000000000000000000000000000000000000000000000000000
...............................CAGCAACAACAATAACAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
........................GCAG---CAGCAACAACAATAACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000100000000000000000000000000000000000000000000000
droMoj3
AGCACCAGCAGCCAAA----AG---------------------------C---------------------------AACCAGCAA-------CTGCAACAACAACACCAACACTGAGGTAAGTAACC-AA----AAAGAAAGC-TAGCAAGGG--AG----CA-AAACAAAA-ACAAA-------AACAAA--AATC--------GAGCAAAAAATTACTGTTGAGCACTAAGA-GAGCTTATGACGTCAAT-TGGG-----------CAG-------------GGGCAATACAC------GGATGTAGCAA-----------------------C--GC-AGGCAGAGAAAG---TGACCCAAAGACG---C---AGCAAAAC--T--------------------------------------------CA----CA--------------------AG--------CC-A---------------------------CCCC-----------AGCCCACCCTTCGCGC-ACATGTCACATGAATAAGCCCATTCATTCCGT--------------------------------------------------------ACAATATCTGGCA-------------------------TTATCTTAA-------GCACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGCAGCCGAAA------ACCAACAGCAG---CGACAGCAACACCAACAGCAACAACAAT------------------AA--TA---------------------ACAACAATACTGAGGTAAGTAACCTGGCCAAAAAGAAAGC-TTACAAGGGGAGG----CA-AAACAAAA--C----AAC-AA-----AAAAATAA----------------------------TAATAAGACG--GCTCTGACGTCAAT-TGAG----------AGC--------------CAATAGCGCAGACACATCCGTGTAGAAAGC-------------------AAA-CGC-GAGCAGAGAAAG---TGACCCAAAGACA---C--------------------------------------------------------------------------------CCTACAATTTC------------------------------------CTCCAGC------T-----CT----------------TCTCATGACTAAACCTTCACATCCAGT-CA---------------------------------------------------A-ATATTTTTAAACTTTATCTCTGGCAAAAAATCGTCTGT--------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 11:24 AM