dsi_11406

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

GCAATTTTTTAGAAGCTACTTATAAGATATTACCATTATTACTTAATTAATAATTATAATTAAAATTATAATAATTATAATTATATTACTTACTCATGAACTCGTTATTATTTGATAATAATCGTAGACTATAAAAAAATTTATATGATAATTCAGCTTTGTTTATATTTAAATGAATATTTTGAATTCCCGACTTAAAGCATTTATGCCGGGAACGAACATGGTATTTGCAGTGAAGTGGTACTTTGCC ***********************************************************************************...............(((((((((((...))))))).)).))..((((((....))))))((..(((((((...(((((((......)))))))..)))))))..))...*****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M024 male body
.....................................................................................TTACTTACTCATGAACTCGTTATT.............................................................................................................................................	24	0	1	1.00	1	1	0	0	0
.........................................................................................................................................................................TAAATGAATATTTTGAATTCCCGACT.......................................................	26	0	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................GTATTTACAGTGAAGTCGTA.......	20	2	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................TTATGCCGGGAACGAACATGG..........................	21	0	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................TATGCCGGGAACGAACATGGTATTTGC...................	27	0	1	1.00	1	1	0	0	0
.....................................................................................................................................................AATTCAGGTTTGTTTGTTTTTAAA.............................................................................	24	3	1	1.00	1	1	0	0	0
..............................................................................................................TTTGATAATAATCGTAGACTATAAAAAA................................................................................................................	28	0	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................................................TGCAGTGAAGTTGTTCTTT...	19	2	6	0.33	2	2	0	0	0
.............................................................................................TCATCAACTCGTTATTCTGT.........................................................................................................................................	20	3	7	0.14	1	1	0	0	0
.............AGCTACTTATGAGATAGGA..........................................................................................................................................................................................................................	19	3	8	0.13	1	0	0	1	0
....................................................................................................................................................................ATATTTAAATGAGAACTTTGAA................................................................	22	3	8	0.13	1	0	0	0	1

CGTTAAAAAATCTTCGATGAATATTCTATAATGGTAATAATGAATTAATTATTAATATTAATTTTAATATTATTAATATTAATATAATGAATGAGTACTTGAGCAATAATAAACTATTATTAGCATCTGATATTTTTTTAAATATACTATTAAGTCGAAACAAATATAAATTTACTTATAAAACTTAAGGGCTGAATTTCGTAAATACGGCCCTTGCTTGTACCATAAACGTCACTTCACCATGAAACGG *****************************************************...............(((((((((((...))))))).)).))..((((((....))))))((..(((((((...(((((((......)))))))..)))))))..))...***********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
...................................................................................ATAATGAATGAGTACTTGAGCAATAAT............................................................................................................................................	27	0	1	1.00	1	0	1	0
CGTTAAAAAATCTTCGATGAAT....................................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0
......................................................................................................................................TTTTTAAAAAGACTAGTAAGT...............................................................................................	21	3	13	0.23	3	3	0	0
..........................................................................................................................................................................................................AAAGACGTCCCTTGCTTGT.............................	19	2	8	0.13	1	1	0	0
................................................................................................................................................................................................................GGCCCTAGCTGGTCCCATA.......................	19	3	8	0.13	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	node_9712:3215-3464 -	dsi_11406	GCAATTTT-TTAGAAGCTACT---------TATAAGATATTACCATTATTAC-------------------TTAAT---------------------TAATAATTATAATTAAAATTATAATAATTATAATTATATTACT---------------------------------------TACTCATGAACTCGTTATTATTTGA-TAAT------AAT--------CGTAGACTATAAAAAA--ATTTATATGATAATTCAGCTTTGTT------TATATTT--------------------------------------------------------------------------------AAATGAATATTTT-------------------GAATTCCCGACTTAAAGC--ATTTATGCCGGGAACGA-ACATGGTATTTGCAGTGAAGTGGTACTT-TG-CC---------
droSec2	scaffold_2753:560-818 -		GCAATTTT-TTAGAAGCTACT--------CTATAAGATATTACCATTATTACCTATAATTATAATTAATTATTAAT---------------------TAATAATTAT-----------TAATAATTATGATTATATTACT---------------------------------------TACTCATGAACTCGTTAATATTTGA-TAAT------AAT--------CGTAGACTATAAAAAA--ATTTATATGATAATTAAGCTTTGTT------TATATTT--------------------------------------------------------------------------------AAATGAATATTTT-------------------GAATTCCCGACTTAAAGC--ATTTATGCCGGGAACGA-ACATGGTATTTGCAGTGAAATGGTACAT-TG-CC---------
dm3	chr3LHet:1652883-1653059 -		GCAACTTTATTAGAAGCTACTTATATTACTTATAAGATATAAT----------------------TAAT--------------------------------------------------------------------------------------------------------------------TCAACTCGTTATTATTTGA-TAAT------AAT--------CGTTGACTATAAAAAAATATTTATATCGTAATTCAGTTTTGTT------TATATTT--------------------------------------------------------------------------------A---------------------------------------------AAGC--ATTTATGACGGGAACGA-ACATGGTATTTGTAATCAAGTGGTACAT-TG-CC---------
droEre2	scaffold_4929:26526140-26526345 +		GCTT--CT-TTGGGAGCTACTTTTATTATGTATAAGACATAAC----------------------TCA--------------T--------------------------------------------------------------------------------------------------GTCTTGAACTCGTTATCATTTGA-TATTT-----TAC--------TGTTGACTAAA-TAAATCATTTATATGCCGATTAGGTTTTGTCCTTTTTTATATTT--------------------------------------------------------------------------------AAACGTAAAT-TT-------------------AAATTCCCGATTTAAAGCGC------ACGAATAACGAAACATGGTATTTGTAACAAAGTGGTGTAT-TG-CC---------
droYak3	v2_chrUn_6432:2165-2310 -		TATT--A-----------------------------------TCATTATTAA-------------------TATTATAA---------------------TTATTATTATTATTATTATTATTATTATTATTATGTTCCT----------------------------A----------TATACTACATCTCCCTCCTTTTGAA-AAAT-AACGTAATAATAT-----------------------------------------------------------------------------------------------------------------------GAAGTCATTT-----------------------------TCAAGTATATATGTATA-----------------------------------TAATAA-------------------AA-TATCT---------
droEug1	scf7180000409180:2325-2453 +		ATTT--T-----------------------------------ATATGATA-------------------GT----AGAATAAAAATAAA-----ATTTCATCTTAAT-------------------------AGAT-------------------------TATAATTATTTATATTTAC---------ATTAGTCAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT--AATAATGGCATCTACTA-AAAACGAGTTGGTGACAATGTGGAGCACTTG-CC---------
droBia1	scf7180000301624:31179-31324 -		TAAAAAAT---ATAAATTATTATTATAA---------------------------------------------TAAATA---------------------TTATTATTATAATAAATATTATTAT---------------------------------------TATTATAAATATTATT---------ATTATTACTATT--ATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCA--AAATATA-CCAAAAATGTCAAATTAATGAGT------------------ACCAATAT-TCTTTATATTTTCATA-----------------A
droTak1	scf7180000415438:425719-425975 +		TTAT--A-----------------------------------TTAT-ATT-------------------ATA----TTATTATATCCTTAACTTGATAAATT---------GATATTATAATAATTATAATTAAATAGTTATAATATAACTACTTTGGATTCTTAACAAGGTT------TATTCAAAA-TATTATCCTTTA--AAATTA-AAAATAATAAGATTTGCATAAATTAGAAATAA--ATTTATATTAG----------------------------------------------------------------------------------TTTAAAAAGTGAATAATTTAAGTTTA-ATTAAATTTTTAAATTATAAAGTATATTTAAG-----TAATATAAA----------------------------------------------GTATTT--TTTCTGTGCAC
droEle1	scf7180000490753:699-789 +		TATT--A-----------------------------------TTATTATTAT-------------------TATTATTA---------------------TTATTATTATTATTATTATTATTATTATTATTAT---------------------------------------TATTATT---------ATTATTATTATT--ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTA--------------------------------------------------------------------------------------TTATACAA
droRho1	scf7180000770178:7640-7847 -		ATTT--TT-ATAAAGG-TAAT---------CAAAACATATATACAAATCTG----------CATT----TTT---------------------TATTTAAAT---------AAAATTTTAATGATTATAATTGTATAATT---------------------------------------T----------------------------------------------------------------------------------------T------TAAATTTGTATAATTTAATACAATAACAAATTGTTTAATAACTATAAAGTGCAGATAAAATATATTCGAAGTGATTTTCTCAAGTTTTTATTACTATTTTAAATCA--------------------AGATGTAAA----------------------------------------------GTTTTT--AT---------
droFic1	scf7180000453073:15253-15267 -		AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTACAT-TG-GC---------
droKik1	scf7180000299969:6053-6058 -		TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CC---------
droBip1	scf7180000395164:4429-4494 -		TTTT--TT----------------------------------ACATTTTT-------------------TT----GAAGTAGTGCTATT-----TTTTAATAATAATAGTAATAATTATAATAATAATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_6:413960-414041 -		ATTA--A------------------------------------TATTATT-------------------TTATAAT---------------------AAATAAATATAAATTAAA------TAATAATA---AAATTGTT------------------------------------------------------------------------------------------------------------ATATAATAT--------------------------------------------------------------------------------------------------------------------------------------TTAAGAA-----------------------------------TAATAA-------------------GT-TGATA---------
droWil2	scf2_1100000004943:13786512-13786640 -		ATTAGTTA---ATTAT-------------------------------ATA-------------------TT----ATGATTAAATTCT------------------------------TATTAATTCTGAATATATGTA----------------------TTTAGCTATATATATTAAA---------ATGAATCCTTTT--ATGATA-AACGCAAATATGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTAGAA-TGAAAATAAAATGGTAA-----------------
droVir3	scaffold_13047:456247-456250 +		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CC---------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCAATTTT-TTAGAAGCTACT---------TATAAGATATTACCATTATTAC-------------------TTAAT---------------------TAATAATTATAATTAAAATTATAATAATTATAATTATATTACT---------------------------------------TACTCATGAACTCGTTATTATTTGA-TAAT------AAT--------CGTAGACTATAAAAAA--ATTTATATGATAATTCAGCTTTGTT------TATATTT--------------------------------------------------------------------------------AAATGAATATTTT-------------------GAATTCCCGACTTAAAGC--ATTTATGCCGGGAACGA-ACATGGTATTTGCAGTGAAGTGGTACTT-TG-CC---------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................TTACT---------------------------------------TACTCATGAACTCGTTATT.....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................T--------------------------------------------------------------------------------AAATGAATATTTT-------------------GAATTCCCGACT.....................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCCGGGAACGA-ACATGG.....................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCCGGGAACGA-ACATGGTATTTGC..............................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTTGA-TAAT------AAT--------CGTAGACTATAAAAAA--.......................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

GCAATTTT-TTAGAAGCTACT--------CTATAAGATATTACCATTATTACCTATAATTATAATTAATTATTAAT---------------------TAATAATTAT-----------TAATAATTATGATTATATTACT---------------------------------------TACTCATGAACTCGTTAATATTTGA-TAAT------AAT--------CGTAGACTATAAAAAA--ATTTATATGATAATTAAGCTTTGTT------TATATTT--------------------------------------------------------------------------------AAATGAATATTTT-------------------GAATTCCCGACTTAAAGC--ATTTATGCCGGGAACGA-ACATGGTATTTGCAGTGAAATGGTACAT-TG-CC---------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTATTTGCAGTGAAATGG....................	21	5	0.20	1	0	0	0	1
....................................................................................................................................................................................................ATATTTGA-TAAT------AAT--------CGTA.....................................................................................................................................................................................................................................................	19	5	0.20	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCCGGGAACGA-ACATGGTT...................................	22	7	0.14	1	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCCGGGAACGA-ACATGG.....................................	21	7	0.14	1	0	0	0	1

dm3

GCAACTTTATTAGAAGCTACTTATATTACTTATAAGATATAAT----------------------TAAT--------------------------------------------------------------------------------------------------------------------TCAACTCGTTATTATTTGA-TAAT------AAT--------CGTTGACTATAAAAAAATATTTATATCGTAATTCAGTTTTGTT------TATATTT--------------------------------------------------------------------------------A---------------------------------------------AAGC--ATTTATGACGGGAACGA-ACATGGTATTTGTAATCAAGTGGTACAT-TG-CC---------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................TTTGA-TAAT------AAT--------CGTTGACTATAAA............................................................................................................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TTAGAAGCTACTTATATTACTTATAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CAACTCGTTATTATTTGA-TAAT------AAT--------C........................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TTT--------------------------------------------------------------------------------A---------------------------------------------AAGC--ATTTATGACGGGAACG.............................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGGAACGA-ACATGGTATTTGTAA............................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGTAATCAAGTGGTACAT-TG-...........	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACGGGAACGA-ACATGGTATTT................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATTTGTAATCAAGTGGTACA................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TTTATATCGTAATTCAGTTTTGTT------TATA....................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................AAGC--ATTTATGACGGGAACGA-ACATGG.....................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGGGAACGA-ACATGG.....................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TAATTCAGTTTTGTT------TATATCA--------------------------------------------------------------------------------.................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCTT--CT-TTGGGAGCTACTTTTATTATGTATAAGACATAAC----------------------TCA--------------T--------------------------------------------------------------------------------------------------GTCTTGAACTCGTTATCATTTGA-TATTT-----TAC--------TGTTGACTAAA-TAAATCATTTATATGCCGATTAGGTTTTGTCCTTTTTTATATTT--------------------------------------------------------------------------------AAACGTAAAT-TT-------------------AAATTCCCGATTTAAAGCGC------ACGAATAACGAAACATGGTATTTGTAACAAAGTGGTGTAT-TG-CC---------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

TATT--A-----------------------------------TCATTATTAA-------------------TATTATAA---------------------TTATTATTATTATTATTATTATTATTATTATTATGTTCCT----------------------------A----------TATACTACATCTCCCTCCTTTTGAA-AAAT-AACGTAATAATAT-----------------------------------------------------------------------------------------------------------------------GAAGTCATTT-----------------------------TCAAGTATATATGTATA-----------------------------------TAATAA-------------------AA-TATCT---------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................TATGTTCCT----------------------------A----------TATACTACATCTCCCTCC......................................................................................................................................................................................................................................................................................	28	10	2.30	23	0	19	4	0	0	0	0	0	0	0	0
........................................................................................................................................TCCT----------------------------A----------TATACTACATCTCCCTCCTTT...................................................................................................................................................................................................................................................................................	26	10	1.40	14	0	14	0	0	0	0	0	0	0	0	0
................................................................................................................................TATTATGTTCCT----------------------------A----------TATACTACATCTCCC.........................................................................................................................................................................................................................................................................................	28	10	1.40	14	0	13	1	0	0	0	0	0	0	0	0
..................................................................................................................................TTATGTTCCT----------------------------A----------TATACTACATCTCCC.........................................................................................................................................................................................................................................................................................	26	10	0.90	9	0	9	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TACTACATCTCCCTCCTTTTGAA-AAA...........................................................................................................................................................................................................................................................................	26	20	0.90	18	0	18	0	0	0	0	0	0	0	0	0
....................................................................................................................................ATGTTCCT----------------------------A----------TATACTACATCTCCCTCC......................................................................................................................................................................................................................................................................................	27	10	0.50	5	0	4	1	0	0	0	0	0	0	0	0
...................................................................................................................................TATGTTCCT----------------------------A----------TATACTACATCTCCC.........................................................................................................................................................................................................................................................................................	25	10	0.50	5	0	4	1	0	0	0	0	0	0	0	0
.....................................................................................................................................TGTTCCT----------------------------A----------TATACTACATCTCCCTCCT.....................................................................................................................................................................................................................................................................................	27	10	0.50	5	0	5	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TTCCT----------------------------A----------TATACTACATCTCCCTCCTTT...................................................................................................................................................................................................................................................................................	27	10	0.40	4	0	4	0	0	0	0	0	0	0	0	0
................................................................................................................................TATTATGTTCCT----------------------------A----------TATACTACATC.............................................................................................................................................................................................................................................................................................	24	10	0.40	4	0	3	1	0	0	0	0	0	0	0	0
.....................................................................................................................................TGTTCCT----------------------------A----------TATACTACATCTCCCTCC......................................................................................................................................................................................................................................................................................	26	10	0.40	4	0	2	2	0	0	0	0	0	0	0	0
...................................................................................................................................TATGTTCCT----------------------------A----------TATACTACATCTCCCT........................................................................................................................................................................................................................................................................................	26	10	0.40	4	0	2	2	0	0	0	0	0	0	0	0
.......................................................................................................................................TTCCT----------------------------A----------TATACTACATCTCCCTCCT.....................................................................................................................................................................................................................................................................................	25	10	0.40	4	0	4	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CT----------------------------A----------TATACTACATCTCCCTCC......................................................................................................................................................................................................................................................................................	21	11	0.36	4	0	4	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTATGTTCCT----------------------------A----------TATACTACATCTCCCT........................................................................................................................................................................................................................................................................................	27	10	0.30	3	1	1	1	0	0	0	0	0	0	0	0
...................................................................................................................................TATGTTCCT----------------------------A----------TATACTACATCTCCCTCCT.....................................................................................................................................................................................................................................................................................	29	10	0.30	3	0	2	1	0	0	0	0	0	0	0	0
..................................................................................................................................TTATGTTCCT----------------------------A----------TATACTACATCTCCCTCC......................................................................................................................................................................................................................................................................................	29	10	0.30	3	0	1	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGAA-AAAT-AACGTAATAATAT-----------------------------------------------------------------------------------------------------------------------GAAGT................................................................................................................................	26	10	0.30	3	0	1	2	0	0	0	0	0	0	0	0
...........................................................................................................................................T----------------------------A----------TATACTACATCTCCCTCCTTTTGAA-..............................................................................................................................................................................................................................................................................	27	14	0.29	4	0	4	0	0	0	0	0	0	0	0	0
........................................................................................................................................TCCT----------------------------A----------TATACTACATCTCCCTCCTTTTG.................................................................................................................................................................................................................................................................................	28	8	0.25	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................T----------------------------A----------TATACTACATCTCCCTCCTTTTGA................................................................................................................................................................................................................................................................................	26	14	0.21	3	0	3	0	0	0	0	0	0	0	0	0
...................................................................................................................................TATGTTCCT----------------------------A----------TATACTACATCTCC..........................................................................................................................................................................................................................................................................................	24	10	0.20	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................TATTATGTTCCT----------------------------A----------TATACTACATCTCC..........................................................................................................................................................................................................................................................................................	27	10	0.20	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................ATTATGTTCCT----------------------------A----------TATACTACATCTCCC.........................................................................................................................................................................................................................................................................................	27	10	0.20	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TACTACATCTCCCTCCTTTTGAA-AAAT-.........................................................................................................................................................................................................................................................................	27	20	0.20	4	0	3	1	0	0	0	0	0	0	0	0
........................................................................................................................................TCCT----------------------------A----------TATACTACATCTCCCTCCT.....................................................................................................................................................................................................................................................................................	24	10	0.20	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TTCCT----------------------------A----------TATACTACATCTCCCTCC......................................................................................................................................................................................................................................................................................	24	10	0.20	2	0	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................TCCT----------------------------A----------TATACTACATCTCCCTCCTT....................................................................................................................................................................................................................................................................................	25	10	0.20	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCCTTTTGAA-AAAT-AACGTAATAATA.............................................................................................................................................................................................................................................................	26	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TCCCTCCTTTTGAA-AAAT-AACGTAATAA...............................................................................................................................................................................................................................................................	28	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TCTCCCTCCTTTTGAA-AAAT-AACGTAA..................................................................................................................................................................................................................................................................	27	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TACTACATCTCCCTCCTTTTGAA-AA............................................................................................................................................................................................................................................................................	25	20	0.15	3	0	2	1	0	0	0	0	0	0	0	0
...........................................................................................................................................T----------------------------A----------TATACTACATCTCCCTCCTTTTGAA-A.............................................................................................................................................................................................................................................................................	28	14	0.14	2	0	1	0	0	0	0	1	0	0	0	0
.........................................................................................................................................CCT----------------------------A----------TATACTACATCTCCCTCCTTTTGA................................................................................................................................................................................................................................................................................	28	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................TCCT----------------------------A----------TATACTACATCTCCCTCCTTTTGA................................................................................................................................................................................................................................................................................	29	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TATACTACATCTCCCTCCTTT...................................................................................................................................................................................................................................................................................	21	17	0.12	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................TCCT----------------------------A----------TATACTACATCTCCCTCCTTTT..................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................CCT----------------------------A----------TATACTACATCTCCCTCCTTTT..................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CT----------------------------A----------TATACTACATCTCCCTCCTTTTGA................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CT----------------------------A----------TATACTACATCTCCCTCCTTTTGAA-..............................................................................................................................................................................................................................................................................	28	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................TTATTATGTTCCT----------------------------A----------TATACTACATC.............................................................................................................................................................................................................................................................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................ATCTCCCTCCTTTTGAA-AAAT-AACG.....................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TTCCT----------------------------A----------TATACTACATCTCCCTCCTTTA..................................................................................................................................................................................................................................................................................	28	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................ATGTTCCT----------------------------A----------TATACTACATCTCCCTCCT.....................................................................................................................................................................................................................................................................................	28	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CCT----------------------------A----------TATACTACATCTCCCTCCT.....................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TCTCCCTCCTTTTGAA-AAAT-AACG.....................................................................................................................................................................................................................................................................	24	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................TCCT----------------------------A----------TATACTACATCTCCCTCC......................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CCT----------------------------A----------TATACTACATCTCCCTC.......................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................TCCT----------------------------A----------TATACTACATCTCCCTC.......................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTTGAA-AAAT-AACGTAATAATAT-----------------------------------------------------------------------------------------------------------------------GAAGT................................................................................................................................	28	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TTATTATGTTCCT----------------------------A----------TATACTACATCTCCA.........................................................................................................................................................................................................................................................................................	29	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................ATTATGTTCCT----------------------------A----------TATACTACATCTCC..........................................................................................................................................................................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TGTTCCT----------------------------A----------TATACTACATCTCCCTCCTC....................................................................................................................................................................................................................................................................................	28	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................TTCCT----------------------------A----------TATACTACATCTCCC.........................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TTTTGAA-AAAT-AACGTAATAATAT-----------------------------------------------------------------------------------------------------------------------GAAGT................................................................................................................................	29	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTATGTTCCT----------------------------A----------TATACTACATCTCCCTC.......................................................................................................................................................................................................................................................................................	28	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................CCT----------------------------A----------TATACTACATCTCCCTCCTTT...................................................................................................................................................................................................................................................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TTCCT----------------------------A----------TATACTACATCTCCCT........................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTGAA-AAAT-AACGTAATAATAT-----------------------------------------------------------------------------------------------------------------------GAAG.................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TTCCT----------------------------A----------TATACTACATCTCCCTCCTT....................................................................................................................................................................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................TTATTATGTTCCT----------------------------A----------TATACTACATCTC...........................................................................................................................................................................................................................................................................................	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................ATTATGTTCCT----------------------------A----------TATACTACATCTCCCTC.......................................................................................................................................................................................................................................................................................	29	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGAA-AAAT-AACGTAATAATAT-----------------------------------------------------------------------------------------------------------------------GAAGC................................................................................................................................	26	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................CT----------------------------A----------TATACTACATCTCCCTCCTTT...................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CT----------------------------A----------TATACTACATCTCCCTCCT.....................................................................................................................................................................................................................................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCCTTTTGAA-AAAT-AACGTAATAATAT-----------------------------------------------------------------------------------------------------------------------.....................................................................................................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GAA-AAAT-AACGTAATAATAT-----------------------------------------------------------------------------------------------------------------------GAAGT................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................A----------TATACTACATCTCCCTCCTTTTGAA-..............................................................................................................................................................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TATACTACATCTCCCTCCTTTTGAA-AA............................................................................................................................................................................................................................................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................T----------------------------A----------TATACTACATCTCCCTCCTTTTG.................................................................................................................................................................................................................................................................................	25	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TATACTACATCTCCCTCCTTTTGAA-AAA...........................................................................................................................................................................................................................................................................	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TATACTACATCTCCCTCCTTTTGAA-A.............................................................................................................................................................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................TTATTATGTTCCT----------------------------A----------TATACTA.................................................................................................................................................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................A----------TATACTACATCTCCCTCCTT....................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................T----------------------------A----------TATACTACATCTCCCTCCT.....................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................T----------------------------A----------TATACTACATCTCCCTCCTTT...................................................................................................................................................................................................................................................................................	23	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...T--A-----------------------------------TCATTATTAA-------------------TATTATAA---------------------TTATTA.................................................................................................................................................................................................................................................................................................................................................................................	26	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................TATTATGTTCCT----------------------------A----------TATAC...................................................................................................................................................................................................................................................................................................	18	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................ACTACATCTCCCTCCTTTTGAA-AAAT-AA.......................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TACTACATCTCCCTCCTTTTGAA-A.............................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................ACTACATCTCCCTCCTTTTGAA-AA............................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CTCCCTCCTTTTGAA-AAAT-AACG.....................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

ATTT--T-----------------------------------ATATGATA-------------------GT----AGAATAAAAATAAA-----ATTTCATCTTAAT-------------------------AGAT-------------------------TATAATTATTTATATTTAC---------ATTAGTCAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT--AATAATGGCATCTACTA-AAAACGAGTTGGTGACAATGTGGAGCACTTG-CC---------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAAAAAAT---ATAAATTATTATTATAA---------------------------------------------TAAATA---------------------TTATTATTATAATAAATATTATTAT---------------------------------------TATTATAAATATTATT---------ATTATTACTATT--ATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCA--AAATATA-CCAAAAATGTCAAATTAATGAGT------------------ACCAATAT-TCTTTATATTTTCATA-----------------A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTAT--A-----------------------------------TTAT-ATT-------------------ATA----TTATTATATCCTTAACTTGATAAATT---------GATATTATAATAATTATAATTAAATAGTTATAATATAACTACTTTGGATTCTTAACAAGGTT------TATTCAAAA-TATTATCCTTTA--AAATTA-AAAATAATAAGATTTGCATAAATTAGAAATAA--ATTTATATTAG----------------------------------------------------------------------------------TTTAAAAAGTGAATAATTTAAGTTTA-ATTAAATTTTTAAATTATAAAGTATATTTAAG-----TAATATAAA----------------------------------------------GTATTT--TTTCTGTGCAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TATT--A-----------------------------------TTATTATTAT-------------------TATTATTA---------------------TTATTATTATTATTATTATTATTATTATTATTAT---------------------------------------TATTATT---------ATTATTATTATT--ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTA--------------------------------------------------------------------------------------TTATACAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTT--TT-ATAAAGG-TAAT---------CAAAACATATATACAAATCTG----------CATT----TTT---------------------TATTTAAAT---------AAAATTTTAATGATTATAATTGTATAATT---------------------------------------T----------------------------------------------------------------------------------------T------TAAATTTGTATAATTTAATACAATAACAAATTGTTTAATAACTATAAAGTGCAGATAAAATATATTCGAAGTGATTTTCTCAAGTTTTTATTACTATTTTAAATCA--------------------AGATGTAAA----------------------------------------------GTTTTT--AT---------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTACAT-TG-GC---------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CC---------	Size	Hit Count	Total Norm	Total
No Reads

droBip1

TTTT--TT----------------------------------ACATTTTT-------------------TT----GAAGTAGTGCTATT-----TTTTAATAATAATAGTAATAATTATAATAATAATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droPer2

ATTA--A------------------------------------TATTATT-------------------TTATAAT---------------------AAATAAATATAAATTAAA------TAATAATA---AAATTGTT------------------------------------------------------------------------------------------------------------ATATAATAT--------------------------------------------------------------------------------------------------------------------------------------TTAAGAA-----------------------------------TAATAA-------------------GT-TGATA---------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

ATTAGTTA---ATTAT-------------------------------ATA-------------------TT----ATGATTAAATTCT------------------------------TATTAATTCTGAATATATGTA----------------------TTTAGCTATATATATTAAA---------ATGAATCCTTTT--ATGATA-AACGCAAATATGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTAGAA-TGAAAATAAAATGGTAA-----------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CC---------

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

dsi_11406

node_9712:3265-3414 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-10.3	-10.2	-10.1