ID:

dsi_11400

 Coordinate:

3r:16343100-16343287 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-47.6 -47.3 -47.1

Flybase annnotation

three_prime_UTR [3r_16343288_16343508_+]; exon [3r_16343288_16343508_+]; three_prime_UTR [3r_16342937_16343099_+]; exon [3r_16342559_16343099_+]; intron [3r_16343100_16343287_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGGCATTAGGTCGTAGTATGCGATTATTGTTCGCTAGAGCTCTGTGAGTGGTGAGTCAAATGGTGTGGATACAGTGAATGGCGGTTAAGAGGAACTACATACATATTTGTTAATATGTATGACAATGCAAAATAATCCTCGTTTATTGCCTATTGGCTAGTTGCTCTTAACACACTTTTACTGCAATAATAACAATAATACTCGTGCAAACTGATTAATGCTTTGATTTTGATTGCAGATTGGCCGCGTGACTGCTGATAAGTGCATAGGAGTTTAGGAATCGTCTGT
**************************************************.(((((....((..((.....(((((((.....((((((((.(((((((((((((((....)))))))))).........(((((.......)))))(((....)))))))).)))))))).....))))))).....))..)).....)))))(((((...((((((....))))))....))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
.............................................................................................................................................................................................................................................GATTGGCCGCGTGACTGCT................................ 19 0 1 5.00 5 4 0 0 0 0 0 1 0 0 0 0
.GGCATTAGGTCGTAGTATGC........................................................................................................................................................................................................................................................................... 20 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0
..........................TTGTTCGCTAGAGCTCTGTGAGTGA............................................................................................................................................................................................................................................. 25 1 1 4.00 4 0 0 0 0 2 0 0 1 0 0 1
....ATTAGGTCGTAGTATGCGATT....................................................................................................................................................................................................................................................................... 21 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TGATTGGCCGCGTGACTGCTGA.............................. 22 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0
.....TTAGGTCGTAGTATGCGATT....................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
TGGCATTAGGTCGTAGTATGC........................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TGATTGGCCGCGTGACTGCT................................ 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................TGGCCGCGTGACTGCTGATAAGTGC....................... 25 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0
.GGCATTAGGTCGTAGTATG............................................................................................................................................................................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............GTAGTATGCGATTATTGTTCG............................................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................ATTGGCCGCGTGACTGCT................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................GATTATTGTTCGCTAGAGCTCTGTGAGT............................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................TTGGCCGCGTGACTGCTGATAAGTGCA...................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.GGCATTAGGTCGTAGTATGCGATTATT.................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................GCTAGAGCTCTGTGAGTGATT........................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................GATTGGCCGCGTGACTGCTGAT............................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................GACTGCTGATAAGTGCATAGGAGT............... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................ATAGGAGTTTAGGAATCGTCT.. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TGCTGATAAGTGCATAGGAGTTTAGGAA........ 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................ATTATTGTTCGCTAGAGCTCTGTGAGT............................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................TGGCCGCGTGACTGCTGATAAGTGCA...................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................TGGCCGCGTGACTGCTGATAAGT......................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................GATTATTGTTCGCTAGAGCTCTGT................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................ATTGGCCGCGTGACTGCC................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................GTGCATAGGAGTTTAGTAATC...... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.GGCATTAGGTCGTAGTATGCGATTA...................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
TGGCATTAGGTCGTAGTATGCGAT........................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.GGCATTAGGTCGTAGTATGCG.......................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ATTTTGATTGCAGATTGGCCG.......................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................TGTGACTGGTGAGTCAATT................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................CCGCGTGACTGCTGATAAGTGCA...................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GTGATTGGCCGCGTGACTGC................................. 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TGATTGGCCGCGTGACTGCTGAT............................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................TGGCCGCGTGACTGCTGATAAGTGCATA.................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................GATAAGTGCATAGGAGTTTA............ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................TGCAGATTGGCCGCGTGACT................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...CATTAGGTCGTAGTATGCGAT........................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TGCATAGGAGTTTAGGAAT....... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................GCGATTATTGTTCGCTAGAGCTCTGTGA................................................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................TGCATAGGAGTTTAGGAATCGTC... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................TTATTGTTCGCTAGAGCT....................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................CATAGGAGTTTAGGAATCGTCT.. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................GATTATTGTTCGCTAGAGCTCT..................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................GTTCGCTAGAGCTCTGTGAGTGATT........................................................................................................................................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
TGGCATTAGGTCGTAGTATGCG.......................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................CGCGTGACTGCTGATAAGTGCATAGGAG................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................GCATAGGAGTTTAGGAATCGTC... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........CGTAGTATGCGATTATTGTTC................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................TATTGTTCGCTAGAGCTCTGTGAG................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GGCCGCGTGACTGCTGATAAGTGCATAA................... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................GTGATTGGCCGCGTGACT................................... 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................GTGCATAGGAGTTTAGGAATCGTC... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GTGATTGGCCGCGTGACTGCT................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GTGACTGCTGATAAGTGC....................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................AACAATAATACTCGTGCAAACTGATT........................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.....TTAGGTCGTAGTATGCGA......................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TGCATAGGAGTTTAGGAATCGTCTG. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....ATTAGGTCGTAGTATGCGA......................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................TGCATAGGAGTTTAGGAATC...... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................CGCGTGACTGCTGATAAGTGCATAGGA................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...............................CGCTAGAGCTCTGTGAGTGATTG.......................................................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TATTGGCTATTGGGTAGATGC............................................................................................................................ 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TAGGAGTTTAGGAATC...... 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GTGACTGCTGATAAGTGCATAGGAG................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ATTTTGATTGGAGATGGGC............................................ 19 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................AGTCCTTAGGAGATTAGGAAT....... 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................GAGACAGTGTATGGCGGGTA......................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................CTTTTAATGCCATAATAACGA............................................................................................. 21 3 10 0.20 2 0 0 0 0 0 2 0 0 0 0 0
.................................................................................................................TATGTATGACAATGGAA.............................................................................................................................................................. 17 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................AATTTTGATTGTAGATTGGCT........................................... 21 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................CATAAGAGTTTAGGA......... 15 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
.................................CTAGTGCTCTGTGTGTGTTG........................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATGAATGCTTTGATTT........................................................... 16 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................AGTGACTTCTGATAAG.......................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................AGTGATTGGCCGCGTGAC.................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCGTAATCCAGCATCATACGCTAATAACAAGCGATCTCGAGACACTCACCACTCAGTTTACCACACCTATGTCACTTACCGCCAATTCTCCTTGATGTATGTATAAACAATTATACATACTGTTACGTTTTATTAGGAGCAAATAACGGATAACCGATCAACGAGAATTGTGTGAAAATGACGTTATTATTGTTATTATGAGCACGTTTGACTAATTACGAAACTAAAACTAACGTCTAACCGGCGCACTGACGACTATTCACGTATCCTCAAATCCTTAGCAGACA
**************************************************.(((((....((..((.....(((((((.....((((((((.(((((((((((((((....)))))))))).........(((((.......)))))(((....)))))))).)))))))).....))))))).....))..)).....)))))(((((...((((((....))))))....))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
....................................................................................................................................................................................................................................................................TCAGGAATCCTCTAATCCTTA....... 21 3 3 43.00 129 114 0 10 0 5 0 0 0
...........................................................................................................................................................................................................................................................................TCCTCAAATCCTTAGCAGGC. 20 1 1 1.00 1 0 1 0 0 0 0 0 0
............................CAAGCGATCTCGAGACAC.................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................CAATTCTCCTTGATGTATGTATAAA.................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
................................................................................CGCCAATTCTCCTTGATG.............................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................TCACTTACCGCCAATTCTCCTTGATGT............................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0
................................................................................CGCCAATTCTCCTTGATGTAT........................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................GAGACACTCACCACTCAGTTT.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................TTACCACACCTAGATCAGT................................................................................................................................................................................................................... 19 3 20 0.35 7 0 0 0 0 1 6 0 0
.............................................................................................................................................................................AGAAAATTACGGTATTATTG............................................................................................... 20 3 20 0.15 3 1 0 0 0 2 0 0 0
...........................................................................................................................................GCAAATCACTGATAACGGA.................................................................................................................................. 19 3 11 0.09 1 0 0 0 0 0 0 1 0
....................................................................................................................................................................AGAAGTGTGTGAACATGA.......................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................CGCGTTAGACTAATCACGA.................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:16343050-16343337 + dsi_11400 TGGCATTAGGTCG--TAGTATGCGATTATTGTTCGCTAGAGCTCTGTGAGTGGTGAGTCAAATGG--------------------TGTGGATACAGTGAATGGCGGTTAAGAGGAACTACATACATATTT-GTT---AAT---A------------------------------------------------------------------------------------------------------------------------TGTATGACAA-----TGCAAAATAATCC-TCGT-TTAT---------------------T-------------------------GCCTATTGGC--------------------------------------TAGTTGCTCTTAACACACTTTTACTGCAATAATAACAATAATAC------------TCGTGCAAACTGATTA--ATGC-----TTTGATTTTGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGGA---GTTTAGGAATCGTCT----------------------------GT
droSec2 scaffold_0:17208722-17209010 + TGGCATTAGGTCG--TAGTATGCGATTATTGTTCGCTAGAGCTCTGTGAGTGGTGAGTCAAATGG--------------------TGTGGATACAGTGAATAGCGGTTAAGAGGAACTACATACATATTT-GTT---AATAATA------------------------------------------------------------------------------------------------------------------------TGTATGACAA-----TGCAAAATAATCC-TCGT-TTAT---------------------T-------------------------GCCTATTGGC--------------------------------------TAGTTGCTCTTAACACACTTTTACTGCAATAATAACAATAATAC------------TCGTGCCAACTGATTA--ATGC-----TTTAAT--TGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGGA---GTTTAGGAATCGTCT----------------------------GT
dm3 chr3R:4648742-4649032 - TGGCATTAGGTCG--TAGTATGCGATTATTGTTCGCTAGAGCTCTGTGAGTGGTGAGTCAAATGG--------------------TATGGATACAGTGAATGGTGGTTAAGAGGAACTACATACATATTT-TTT---AATAATA------------------------------------------------------------------------------------------------------------------------TGTATGACAA-----TGCAAAATAATCC-TCGT-TTAT---------------------T-------------------------GCCTATTGGC--------------------------------------TAGTTGCTCTTAACACACTTTTACTGAAATAATAACAATAATAA------------TCATACCAACTGATTA--ATGC-----TTTGATTTTGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGAA---GTTTAGGAATCGTCT----------------------------GT
droEre2 scaffold_4770:16937235-16937557 + TGGCATTAGGTCG--TAGTATGCGATTATTGTTCGCTAGAGCTCTGTGAGTGGTGAGTCAAATGT--------------------TGTGAGCACAGTGAATGGCGGTTAAGAGAAACTA--------TTT-GTT---AATAATA---------------------------------------------------------------------TAAA--AATTACTATGTTAGAAAAGA---------GATTTC--AT-CTCTAAGTATCACAATCAATTGCAAAATAATCT-CCGT-TTAT---------------------T-------------------------GCCGTTTGGC--------------------------------------TAGTTGCTCTTAACACAGTTTTACTGCAATAATAAGAATAATAC------------TCGTGCCAACTGATTA--ACGC-----TTTGATT-TGATTGCAGATTGGCCGCGTGAC----TGCTGATAACTGAAT------AGGA---GTTTAGAAA-CCTAT----------------------------TT
droYak3 3R:8710619-8710940 - TGGCATTAGGTCG--TAGTATGCGATTATTGTTCGCTAGAGCTCTGTGAGTGGTGAGTCAAATGG--------------------TGTTAGTACAGTGAATGGCGGTTAAGAGGAACTA--------TTT-GTT---TATAATA---------------------------------------------------------------------TAAATAACTTAAAATGTGATAAAAGAAAATAGGGTGATTTGGTAT-TTCTATGTATGACAA---------------TCT-CCCT-TTAT---------------------T-------------------------GCCAATTGGC--------------------------------------TAGTTGCTCTTAACTCGCTTTTACTGCAATAATAACAATAATAC------------TCGTGCCAACTGATTA--ACGC-----TTTGATTTCGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGGA---GTTTAGAAAACAAT-----------------------------TT
droEug1 scf7180000409490:72094-72364 + TGGCATTAGGTCG--TAGTATGCGATTAT---TCGCTAGAGCTCTGTGAGTGGTGAGTCAATTAG--------------------AGTGAATACAGTGGAAAGCAGTTAAAAGGAACTAT--------AT-GTT---CAG---T------------------------------------------------------------------------------------------------------------------------AATATGATAA-----ATATTAATATTCA-AATT-TTAT---------------------T-------------------------GGCGAATGAT--------------------------------------TAGTTTCTCTTAAACCTTATCAACTGC-----------------ACTTAAACTAC-TCGTGCCAACTGATTA--ATAC-----TTTGATTTTGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGGG---GTATAGAATACGACT----------------------------TT
droBia1 scf7180000302402:7363407-7363697 - TGGCATTAGGTCG--TAGTATGCGATTAT---TCGCTAGAGCTCTGTGAGTGGTGAGTCAATTAG--------------------TGTGAATACAGTGGCAAGCGGTTAAGATAAACTATTAATGTATTTAGTTTGGAATCATATGTGAAGCTAGT----------------CCGATA---------------------ATTC--------------------ACA-TA-------------------TATTTGATG-----------------------------------------TTCC---------------------T-------------------------TCCCAATGAC--------------------------------------TAGTTTATCTTCACCAATTCCCGCTGC-----------------ACTTGAATCAC-----TCCAACTGATTA--ACGC-----TTTGATTTTTACTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGGA---GTATAGGATACGACT----------------------------TT
droTak1 scf7180000414009:168250-168489 + TGGCATTAGGTCG--TAGTATGCGATAAT---TCGCTAGAGCTCTGTGAGTGGTGAGTCAATTGG--------------------TGTGAGTACAGTGGAGAGCGGTTAAGATGAACTT-------------------------------------------------------------GATCTATTAAT---------CT-----------------------------------------------------------------------------------------------------------------------------------------------------------GA--------------------------------------TCTTTAATCTGAACCCCTTTCTACTGC-----------------ACTTGAACCGC-TCGTGCCATCTGATTA--ACGC-----TTTGATTTCTTTTACAGATTGGCCGCGTGAC----TGCTGATAAGTGCAGAAAAATAGGG---GTATAGGATACGACT----------------------------TT
droEle1 scf7180000491212:1145066-1145204 + TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------T-------------------------TCTTA---------------------------------------ATTGTGTTTTCTCTTAACCCACTTCTACTGC-----------------ACATTAAACAC-TCGTGCCAACCGATTA--ATGC-----TCTT-TTCTGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAC------AGGGA--GTCTAGGATTCGACA----------------------------TT
droRho1 scf7180000759293:278-680 + TGGCATTAGGTCG--TAGTATGCGATTAT---TCGCTAGAGCTCTGAGAGTGGTGAGTCAAGTGG--------------------ATGATATACAGTGGATATTGGTTAAGAGAAACTACTA-C--------TA---A------------------------------ATTACTGACTCTGTTCTACTAATTAAAACTAGCTGA----------------------------------------------TCTT--ATAGGCTTTATA-TGCAAGCAATTCCAAAGTTATTT-CAGATTTATTTTTCTAAAACAATTAAATAATGCTGTTAATTCTGAAATCACTAGGTGTCA--AGACTTGTTGCTCTTTATTTTGTTAATTTTATTGCTTTATT-TTGTTTTTCTTAACCCACTTCTACTGC-----------------AATTTAACCAC-TCGTGCCAACTGATTA--ATGC-----GTTGATTCTGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCTT------AGGAA--GTATAGAATTCGACA----------------------------TT
droFic1 scf7180000454106:2518987-2519284 + TGGCATTAGGTCG--TAGTATGCGATTAT---TCGCTAGAGCTCTGTGAGTGGTGAGTCGATTGG-------------------ATGTGAACACA-------CCGGTAAAGAGAAACTATATA---------------------AGGGATGCTAATTAATATTATTATTTTACCGATA---------------------GAGCAATCTTAAATT-GGAAATTTAAAATGTTAT-----------------------------------TGACAA---------------CCTTTTGT-TTAT------------------------------------------------CAGT---------------------------------------ATTGTAGTTTCTCTTAATCTACTTGAACTGC---------------AC------------TTGAGC---CTGATTA--ATGT-----TTTGATTTTTATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGAG---GTATAGGATACGACT----------------------------TT
droKik1 scf7180000302639:1905425-1905700 + TGGCATCAAGTCG--TAGTATGCGATTAT---TCGCTAGAGCTCTGTGAGTGGTGAGTAAATTGG-------------------CTGTGAACACAGTGAGTGCTGGGTCAGAGGAACA---TATATAA-----------------------------------------------------------------------------------------------------------AAGA---------GAATTT--ACAGTCTAAA---------------TAAAATAGTAA-AGCT-TTAT---------------------T-------------------------T----TT-------------------------------------ATT-AAGTTTCTCTCAACCCATTTCACTTGA-----------------GCTTCAAGCACCTCTACCGAACTGATTA--A---------TTGATTTCCATTGCAGATTGGCCGCGTGATTGACTGCTGATAAGTGCAT------TGCGAGTATATAGGATACGACA----------------------------TT
droAna3 scaffold_13340:11057898-11058046 - TGGCATTAGGTCG--TAGT-------------TTGCTATAGATCTGAGAGTGGTGAGTAGT-------------------------GCGATAGCAG-----------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------A-TCGT-AAAT---------------------T-------------------------GTCTTTTTGT--------------------------------------AGGATT----------------------------------------------------------AAAC---A--ACGA-----TATT-TATGTATTTCAGATTGGTCGCGTGAT----TGCTTCG---------------AGG---GTATTTGATAGAACA----------------------------AT
droBip1 scf7180000396374:25817-25988 + TGGCATTAGGTCG--TAGT-------------TTGCTATAGATCTGAGAGTGGTGAGTAGTGTGA---TTCGAATCAAAATTGGATG--------------------------AAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTTT----------TCC-----------------ATTCTATCTAT-TATTGATAAAAGAATG--ATGA-----TTTTTTATTCATTTCAGATTGGTCGCGTGAT----TGCTTCG---------------AGG---GTATATGATAGAACA----------------------------AT
dp5 2:23134091-23134162 + AG-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC------------TCGAACAAACTGATTA--ATGC-----TCTGATT----TTACAGATTGGGCGAGTGAC----TGCTGATAAGAGAAT------AAGG---A--------------------------------------------
droPer2 scaffold_3:5905898-5905969 + AG-CAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAGCAAACTGATTA--ATGT-----TCTGATT----TTACAGATTGGTCGAGTGAC----TGCTGATAAGTGAAT------AAGG---A--------------------------------------------
droWil2 scf2_1100000004902:10765073-10765110 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT----TGCTGATAAGTCTAT------ATAT---GAGT-GAGTGTGTTT----------------------------GG
droVir3 scaffold_13047:3047928-3047955 - TG-CATTGGATTTTATAGTATATAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------GT
droMoj3 scaffold_6540:20089574-20089803 - TTGCATTGAGTTT--TAGATTATTATTAA-------TGTGGCTGTGTAAGTAGTTATATAAGTGCTCACTGAATTCA--------------------------TACTTATGTAGAGTTC--------TTC-GTT---TCCAGTT---------------------------------------------------------------------TGTGAGATTTGGGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGAACTGA-----------------ACAATAAGGAC-TCGCTGGAACTGATCCTAATTGAACGATC-----------------------TGTGAA----TATA--TGTGTGTGT------GTAC---GCTTTGGAGTGA-CTGGACCCCATCTGAACGGTCATGGAATATGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGGCATTAGGTCG--TAGTATGCGATTATTGTTCGCTAGAGCTCTGTGAGTGGTGAGTCAAATGG--------------------TGTGGATACAGTGAATGGCGGTTAAGAGGAACTACATACATATTT-GTT---AAT---A------------------------------------------------------------------------------------------------------------------------TGTATGACAA-----TGCAAAATAATCC-TCGT-TTAT---------------------T-------------------------GCCTATTGGC--------------------------------------TAGTTGCTCTTAACACACTTTTACTGCAATAATAACAATAATAC------------TCGTGCAAACTGATTA--ATGC-----TTTGATTTTGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGGA---GTTTAGGAATCGTCT----------------------------GTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCCGCGTGAC----TGCT.....................................................................1915.00504100000000000000
.GGCATTAGGTCG--TAGTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.00403010000000000000
............................TTGTTCGCTAGAGCTCTGTGAGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.00400000021010000000
....ATTAGGTCG--TAGTATGCGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00321000000000000000
.....TTAGGTCG--TAGTATGCGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
TGGCATTAGGTCG--TAGTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00211000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGCGTGAC----TGCTGATAAGTGC............................................................2512.00201000010000000000
.GGCATTAGGTCG--TAGTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000000000000000
............G--TAGTATGCGATTATTGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200110000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCGCGTGAC----TGCT.....................................................................1812.00202000000000000000
.......................GATTATTGTTCGCTAGAGCTCTGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCGCGTGAC----TGCTGATAAGTGCA...........................................................2711.00100000001000000000
.GGCATTAGGTCG--TAGTATGCGATTATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCCGCGTGAC----TGCTGAT..................................................................2211.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC----TGCTGATAAGTGCAT------AGGA---GT...........................................2411.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------AGGA---GTTTAGGAATCGTCT----------------------------..2111.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATAAGTGCAT------AGGA---GTTTAGGAA....................................2811.00100000000100000000
........................ATTATTGTTCGCTAGAGCTCTGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGCGTGAC----TGCTGATAAGTGCA...........................................................2611.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGCGTGAC----TGCTGATAAGT..............................................................2311.00100100000000000000
.......................GATTATTGTTCGCTAGAGCTCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCGCGTGAC----TGCC.....................................................................1811.00101000000000000000
.GGCATTAGGTCG--TAGTATGCGATTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
TGGCATTAGGTCG--TAGTATGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
.GGCATTAGGTCG--TAGTATGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGATTGCAGATTGGCCG...................................................................................2111.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGTGAC----TGCTGATAAGTGCA...........................................................2311.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGCGTGAC----TGCTGATAAGTGCAT------A...................................................2811.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGTGCAT------AGGA---GTTTA........................................2011.00100000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGATTGGCCGCGTGAC----T........................................................................2011.00110000000000000000
...CATTAGGTCG--TAGTATGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAT------AGGA---GTTTAGGAAT...................................1911.00100010000000000000
.....................GCGATTATTGTTCGCTAGAGCTCTGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAT------AGGA---GTTTAGGAATCGTC...............................2311.00100000010000000000
.........................TTATTGTTCGCTAGAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT------AGGA---GTTTAGGAATCGTCT----------------------------..2211.00100100000000000000
.......................GATTATTGTTCGCTAGAGCTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
TGGCATTAGGTCG--TAGTATGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGAC----TGCTGATAAGTGCAT------AGGA---G............................................2811.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAT------AGGA---GTTTAGGAATCGTC...............................2211.00100000000001000000
...........CG--TAGTATGCGATTATTGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..........................TATTGTTCGCTAGAGCTCTGTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGCGTGAC----TGCTGATAAGTGCAT------AA..................................................2811.00100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAT------AGGA---GTTTAGGAATCGTC...............................2411.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAC----TGCTGATAAGTGC............................................................1811.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATAATAC------------TCGTGCAAACTGATT........................................................................................................................2611.00100000000000100000
.....TTAGGTCG--TAGTATGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAT------AGGA---GTTTAGGAATCGTCT----------------------------G.2511.00100010000000000000
....ATTAGGTCG--TAGTATGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAT------AGGA---GTTTAGGAATC..................................2011.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGAC----TGCTGATAAGTGCAT------AGGA---.............................................2711.00100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGGA---GTTTAGGAATC..................................1611.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAC----TGCTGATAAGTGCAT------AGGA---G............................................2511.00101000000000000000
droSec2
TGGCATTAGGTCG--TAGTATGCGATTATTGTTCGCTAGAGCTCTGTGAGTGGTGAGTCAAATGG--------------------TGTGGATACAGTGAATAGCGGTTAAGAGGAACTACATACATATTT-GTT---AATAATA------------------------------------------------------------------------------------------------------------------------TGTATGACAA-----TGCAAAATAATCC-TCGT-TTAT---------------------T-------------------------GCCTATTGGC--------------------------------------TAGTTGCTCTTAACACACTTTTACTGCAATAATAACAATAATAC------------TCGTGCCAACTGATTA--ATGC-----TTTAAT--TGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGGA---GTTTAGGAATCGTCT----------------------------GTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....ATTAGGTCG--TAGTATGCGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020110
....ATTAGGTCG--TAGTATGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGGA---GTTTAGGAATCGTC...............................1912.0022000
....ATTAGGTCG--TAGTATGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCAT------AGGA---GTTTAGGA.....................................1912.0020200
.GGCATTAGGTCG--TAGTATGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0022000
.....................................................................................TGTGGATACAGTGAATAGCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGTGCAT------AGGA---GTTTAGG......................................2212.0021100
TGGCATTAGGTCG--TAGTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200
.GGCATTAGGTCG--TAGTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0022000
...................................................................................................................................................................................................................................................................................................................................T-------------------------GCCTATTGGC--------------------------------------TAGTTGCTCTTAACA................................................................................................................................................................................2611.0011000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGCGTGAC----TGCTGATAAGTGC............................................................2511.0010010
TGGCATTAGGTCG--TAGTATGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
.................................CGCTAGAGCTCTGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
....................................................GTGAGTCAAATGG--------------------TGTGGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GTTTAGGAATCGTCT----------------------------GT1811.0010010
.......................GATTATTGTTCGCTAGAGCTCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAT------AGGA---GTTTAGGAATCGT................................2111.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----TGCTGATAAGTGCAT------AGGA---GT...........................................2311.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAAGTGCAT------AGGA---GT...........................................2011.0010100
.GGCATTAGGTCG--TAGTATGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGATTGCAGATTGGCCGCGT................................................................................2211.0010100
.GGCATTAGGTCG--TAGTATGCGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGTGCAT------AGGA---GTTTAGGAAT...................................2511.0011000
............G--TAGTATGCGATTATTGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------AGGA---GTTTAGGAATCGT................................1911.0010100
...........................ATTGTTCGCTAGAGCTCTGTGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
..GCATTAGGTCG--TAGTATGCGATTATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAAGTGCAT------AGGA---GTTTAGGA.....................................2611.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAAGTGCAT------AGGA---GTTTAGG......................................2511.0010100
...........................ATTGTTCGCTAGAGCTCTGTGAGTGGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
TGGCATTAGGTCG--TAGTATGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
..................................................................................................................................................................................................................................................................................................................................................................TTGGC--------------------------------------TAGTTGCTCTTAACACA..............................................................................................................................................................................2211.0011000
....ATTAGGTCG--TAGTATGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..................TATGCGATTATTGTTCGCTAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGCAT------AGGA---GTTTAGG......................................2011.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAC----TGCTGATAAGTGCAT------AGG.................................................2211.0010100
................................TCGCTAGAGCTCTGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCAT------AGGA---GTTTAGGAAT...................................2111.0010100
...................................................................................................ATAGCGGTTAAGAGGAACTACATACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
................................TCGCTAGAGCTCTGTGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
...CATTAGGTCG--TAGTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCAT------AGGA---GTTTAG.......................................1811.0011000
....................................................................................................TAGCGGTTAAGAGGAACTACATACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTGCAT------AGGA---GTTTAGGAAT...................................2611.0010100
.......................GATTATTGTTCGCTAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
...........................ATTGTTCGCTAGAGCTCTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TGATTGCAGATTGGCCGCGT................................................................................2111.0010001
....................................................GTGAGTCAAATGG--------------------TGTGGATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGCGTGAC----TGCTGATAAGTGC............................................................2411.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGTGCAT------AGGA---GTTTAGGAAT...................................2411.0010100
...CATTAGGTCG--TAGTATGCGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
.......................GATTATTGTTCGCTAGAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAT------AGGA---GTTTAGGAATCGT................................2311.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCAGATTGGCCGCGTGTT----.........................................................................2211.0010001
.............................................GTGAGTGGTGAGTCAAATGG--------------------TGTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGAC----TGCTGATAAGTGCAT------AGGA---.............................................2711.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTGCAGATTGGCCGCGT................................................................................2011.0010100
......................................................................................GTGGATACAGTGAATAGCGGTTAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
dm3
TGGCATTAGGTCG--TAGTATGCGATTATTGTTCGCTAGAGCTCTGTGAGTGGTGAGTCAAATGG--------------------TATGGATACAGTGAATGGTGGTTAAGAGGAACTACATACATATTT-TTT---AATAATA------------------------------------------------------------------------------------------------------------------------TGTATGACAA-----TGCAAAATAATCC-TCGT-TTAT---------------------T-------------------------GCCTATTGGC--------------------------------------TAGTTGCTCTTAACACACTTTTACTGAAATAATAACAATAATAA------------TCATACCAACTGATTA--ATGC-----TTTGATTTTGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGAA---GTTTAGGAATCGTCT----------------------------GTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................GCTAGAGCTCTGTGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000000000010001000000000000100000000000
............G--TAGTATGCGATTATTGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2118.0080000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001010000000000000000000000000000000300000000000
..GCATTAGGTCG--TAGTATGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000300000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGAC----TGCTGATAAGTGC............................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
....ATTAGGTCG--TAGTATGCGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001010000000000000000000000000000000100000000000
...CATTAGGTCG--TAGTATGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000400000000000
....ATTAGGTCG--TAGTATGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000020000000000000000000200000000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAC----TGCTGATAAGTGCAT------....................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000010001010100000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGGCATTAGGTCG--TAGTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000111000000
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.......AGGTCG--TAGTATGCGATTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAT------AGAA---GTTTAGGAATCGTCT----------------------------GT2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGCGTGAC----TGCTGATAA................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGGCATTAGGTCG--TAGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTATTGTTCGCTAGAGCTCTGTGAGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAT------AGAA---GTTTAGGAATCG.................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
TGGCATTAGGTCG--TAGTATGCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAT------AGAA---GTTTAGGAATCG.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.........................................CTCTGTGAGTGGTGAGTCAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAC----TGCTGATAAGTGCAT------AGA.................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAC----TGCTGATAAGTGCAT------AGAA---GTTT.........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTTGATTGCAGATTGGC.....................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCGTGAC----TGCTGATAAGT..............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGAA---GTTTAGGAATCGTCT----------------------------GT2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAT------AGAA---GTTTAGGAATCGT................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....TTAGGTCG--TAGTATGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAA---GTTTAGGAATCGTCT----------------------------G.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAT------AGAA---GTTTAGGAA....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....TTAGGTCG--TAGTATGCGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................TTATTGTTCGCTAGAGCTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCGTGAC----TGCTGATAAG...............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCAT------AGAA---GTTTAGGAATC..................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAACTGATTA--ATGC-----TTT.........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC----TGCTGATAAGTGCAT------AGAA---G............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CGCTAGAGCTCTGTGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ATGC-----TTTGATTTTGATTGCA............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAACTGATTA--ATGC-----TTTGA.......................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TGTTCGCTAGAGCTCTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................TATTGTTCGCTAGAGCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TGGCATTAGGTCG--TAGTATGCGATTATTGTTCGCTAGAGCTCTGTGAGTGGTGAGTCAAATGT--------------------TGTGAGCACAGTGAATGGCGGTTAAGAGAAACTA--------TTT-GTT---AATAATA---------------------------------------------------------------------TAAA--AATTACTATGTTAGAAAAGA---------GATTTC--AT-CTCTAAGTATCACAATCAATTGCAAAATAATCT-CCGT-TTAT---------------------T-------------------------GCCGTTTGGC--------------------------------------TAGTTGCTCTTAACACAGTTTTACTGCAATAATAAGAATAATAC------------TCGTGCCAACTGATTA--ACGC-----TTTGATT-TGATTGCAGATTGGCCGCGTGAC----TGCTGATAACTGAAT------AGGA---GTTTAGAAA-CCTAT----------------------------TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.GGCATTAGGTCG--TAGTATGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0021000100
.......................GATTATTGTTCGCTAGAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000200
....ATTAGGTCG--TAGTATGCGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000200
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACTGAAT------AGGA---GTTTAGAAA-CCT................................2712.0021000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC----TGCTGATAACTGAAT------AGGA---.............................................2212.0020100010
.GGCATTAGGTCG--TAGTATGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0021000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATAACTGAAT------AGGA---GTT..........................................2211.0011000000
............G--TAGTATGCGATTATTGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.....TTAGGTCG--TAGTATGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
..GCATTAGGTCG--TAGTATGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAC----TGCTGATAACTGAAT------AGGA---G............................................2511.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TGCTGATAACTGAAT------AGGA---G............................................2111.0010000100
.................................CGCTAGAGCTCTGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TGCTGATAACTGAAT------AGGA---.............................................2011.0010000100
..................TATGCGATTATTGTTCGCTAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
..............................................................TGT--------------------TGTGAGCACAGTGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..GCATTAGGTCG--TAGTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCGCGTGAC----TGCTGAT..................................................................2011.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAT------AGGA---GTTTAGAA.....................................2011.0011000000
.....TTAGGTCG--TAGTATGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
....ATTAGGTCG--TAGTATGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.........................TTATTGTTCGCTAGAGCTCTGTGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..............................GTTCGCTAGAGCTCTGTGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----TGCTGATAACTGAAT------AGGA---GTTTA........................................2611.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAT------AGGA---GTTTAGA......................................1911.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT------AGGA---GTTTAGAAA-CC.................................1911.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAT------AGGA---GTTTAGAAA-C..................................2111.0011000000
.......................GATTATTGTTCGCTAGAGCTCTGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
................................TCGCTAGAGCTCTGTGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAACTGAAT------AGGA---C............................................1911.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGAC----TGCTGATAACTGAAT------AGGA---.............................................2711.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATAACTGAAT------AGGA---.............................................1911.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC----TGCTGATAACTGAAT------AGGA---G............................................2311.0010000100
............G--TAGTATGCGATTATTGTTCGCTAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000
...............................................................................................................................................................................................................................................................................................................................................................CGTTTGGC--------------------------------------TAGTTGCTCT.....................................................................................................................................................................................1811.0010000010
TGGCATTAGGTCG--TAGTATGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...........................ATTGTTCGCTAGAGCTCTGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...........................ATTGTTCGCTAGAGCTCTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------AGGA---GTTTAGAAA-CCT................................1811.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAC----TGCTGATAACTGAAT------AGGA---.............................................2611.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATAACTGAAT------AGGA---GTTTAGAA.....................................2711.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAACTGAAT------AGGA---G............................................1911.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAC----TGCTGATAACTGAAT------AGGA---.............................................2311.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAT------AGGA---GTTTAGAAA-CCT................................2411.0010000100
......................CGATTATTGTTCGCTAGAGCTCTGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
droYak3
TGGCATTAGGTCG--TAGTATGCGATTATTGTTCGCTAGAGCTCTGTGAGTGGTGAGTCAAATGG--------------------TGTTAGTACAGTGAATGGCGGTTAAGAGGAACTA--------TTT-GTT---TATAATA---------------------------------------------------------------------TAAATAACTTAAAATGTGATAAAAGAAAATAGGGTGATTTGGTAT-TTCTATGTATGACAA---------------TCT-CCCT-TTAT---------------------T-------------------------GCCAATTGGC--------------------------------------TAGTTGCTCTTAACTCGCTTTTACTGCAATAATAACAATAATAC------------TCGTGCCAACTGATTA--ACGC-----TTTGATTTCGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGGA---GTTTAGAAAACAAT-----------------------------TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCAT------AGGA---GTTTAGAA.....................................2015.00501000040000
.GGCATTAGGTCG--TAGTATGCGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.00401000030000
.GGCATTAGGTCG--TAGTATGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300000030000
TGGCATTAGGTCG--TAGTATGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.00300000030000
....ATTAGGTCG--TAGTATGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00300000030000
.......................GATTATTGTTCGCTAGAGCTCTGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.00300000030000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGTGCAT------AGGA---GTTTAGAA.....................................2313.00300000030000
.GGCATTAGGTCG--TAGTATGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000020000
.......................GATTATTGTTCGCTAGAGCTCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTGCAT------AGGA---GTTTAGA......................................2312.00200000020000
..............................GTTCGCTAGAGCTCTGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000020000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGTGCAT------AGGA---GTTTAGA......................................2212.00200000020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTGCAT------AGGA---GTTTA........................................2112.00200000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAAGTGCAT------AGGA---GTTTAGA......................................2512.00200000020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTGCAT------AGGA---GTTTAGAA.....................................2412.00200010010000
...................ATGCGATTATTGTTCGCTAGAGCTCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAT------AGGA---GTTTAGAAAAC..................................2012.00201000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCAT------AGGA---GTTTAGAAAACA.................................2412.00200000020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGTGCAT------AGGA---GTTTAGA......................................2112.00200000020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCAT------AGGA---GTTTAGA......................................1912.00200000020000
TGGCATTAGGTCG--TAGTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATAAGTGCAT------AGGA---GTTTAGA......................................2612.00200000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAAGTGCAT------AGGA---GTTTAGAA.....................................2612.00200000020000
.....TTAGGTCG--TAGTATGCGATTATTGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCCGCGTGAC----TGCTGATAAGTGC............................................................2811.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGTGCAT------AGGA---GTTTA........................................2011.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAC----TGCTGATAAGTGCAT------A...................................................2111.00101000000000
.....TTAGGTCG--TAGTATGCGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAAGTGCAT------AGGA---GTTTAGAAA....................................2711.00100000010000
TGGCATTAGGTCG--TAGTATGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAAGTGCAT------AGGA---GTT..........................................2111.00100000010000
..GCATTAGGTCG--TAGTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGCAT------AGGA---GTTTAGAAAAC..................................2411.00100000010000
.GGCATTAGGTCG--TAGTATGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGTGCAT------AGGA---GTTTAGAA.....................................2211.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCAT------AGGA---GTTTAGAA.....................................1911.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGCAT------AGGA---GTTTAGA......................................2011.00100000010000
.................................CGCTAGAGCTCTGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000
...........................ATTGTTCGCTAGAGCTCTGTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.................................................................................................GAATGGCGGTTAAGAGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
............G--TAGTATGCGATTATTGTTCGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATAAGTGCAT------AGGA---GTTTAGA......................................2411.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGTGCAT------AGGA---GTTTAGAAAACA.................................2711.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC----TGCTGATAAGTGCAT------AGGA---G............................................2311.00100000010000
.............................................................................................................................................................................................................................................GAAAATAGGGTGATTTGGT............................................................................................................................................................................................................................................................................................................................................1911.00100000010000
...........................ATTGTTCGCTAGAGCTCTGTGAGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
TGGCATTAGGTCG--TAGTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT------AGGA---GTTTAGAAAACAAT-----------------------------..2111.00100100000000
.GGCATTAGGTCG--TAGTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..............................GTTCGCTAGAGCTCTGTGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.GGCATTAGGTCG--TAGTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGTGCAT------AGGA---GTTTA........................................1911.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAC----TGCTGATAAGTGCAT------AGG.................................................2211.00110000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAAGTGCAT------AGGA---GTTTAGAAAA...................................2811.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATAAGTGCAT------AGGA---GTTTAGAA.....................................2711.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAT------AGGA---GTTTAGAAAACA.................................2011.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGCAT------AGGA---GTTTAGAA.....................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TGCTGATAAGTGCAT------AGGA---.............................................2011.00100000010000
................................TCGCTAGAGCTCTGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..GCATTAGGTCG--TAGTATGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...........CG--TAGTATGCGATTATTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC----TGCTGATAAGTGCAT------AGGA---.............................................2211.00100000010000
..........................TATTGTTCGCTAGAGCTCTGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGTGCAT------AGGA---GTTT.........................................1911.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAC----TGCTGATAAGTGCAT------AGGA---G............................................2711.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCAT------AGGA---GTTTAGAAAA...................................2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCAT------AGGA---GTTTAGAAAAC..................................2311.00100000010000
...CATTAGGTCG--TAGTATGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
........................ATTATTGTTCGCTAGAGCTCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
......TAGGTCG--TAGTATGCGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGAC----TGCTGATAAGTGCAT------AG..................................................2511.00110000000000
...........CG--TAGTATGCGATTATTGTTCGCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAAGTGCAT------AGGA---GTTTAGAAAAC..................................2911.00100000010000
droEug1
TGGCATTAGGTCG--TAGTATGCGATTAT---TCGCTAGAGCTCTGTGAGTGGTGAGTCAATTAG--------------------AGTGAATACAGTGGAAAGCAGTTAAAAGGAACTAT--------AT-GTT---CAG---T------------------------------------------------------------------------------------------------------------------------AATATGATAA-----ATATTAATATTCA-AATT-TTAT---------------------T-------------------------GGCGAATGAT--------------------------------------TAGTTTCTCTTAAACCTTATCAACTGC-----------------ACTTAAACTAC-TCGTGCCAACTGATTA--ATAC-----TTTGATTTTGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGGG---GTATAGAATACGACT----------------------------TTSizeHit CountTotal NormTotal
No Reads
droBia1
TGGCATTAGGTCG--TAGTATGCGATTAT---TCGCTAGAGCTCTGTGAGTGGTGAGTCAATTAG--------------------TGTGAATACAGTGGCAAGCGGTTAAGATAAACTATTAATGTATTTAGTTTGGAATCATATGTGAAGCTAGT----------------CCGATA---------------------ATTC--------------------ACA-TA-------------------TATTTGATG-----------------------------------------TTCC---------------------T-------------------------TCCCAATGAC--------------------------------------TAGTTTATCTTCACCAATTCCCGCTGC-----------------ACTTGAATCAC-----TCCAACTGATTA--ACGC-----TTTGATTTTTACTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGGA---GTATAGGATACGACT----------------------------TTSizeHit CountTotal NormTotal
No Reads
droTak1
TGGCATTAGGTCG--TAGTATGCGATAAT---TCGCTAGAGCTCTGTGAGTGGTGAGTCAATTGG--------------------TGTGAGTACAGTGGAGAGCGGTTAAGATGAACTT-------------------------------------------------------------GATCTATTAAT---------CT-----------------------------------------------------------------------------------------------------------------------------------------------------------GA--------------------------------------TCTTTAATCTGAACCCCTTTCTACTGC-----------------ACTTGAACCGC-TCGTGCCATCTGATTA--ACGC-----TTTGATTTCTTTTACAGATTGGCCGCGTGAC----TGCTGATAAGTGCAGAAAAATAGGG---GTATAGGATACGACT----------------------------TTSizeHit CountTotal NormTotal
No Reads
droEle1
TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------T-------------------------TCTTA---------------------------------------ATTGTGTTTTCTCTTAACCCACTTCTACTGC-----------------ACATTAAACAC-TCGTGCCAACCGATTA--ATGC-----TCTT-TTCTGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAC------AGGGA--GTCTAGGATTCGACA----------------------------TTSizeHit CountTotal NormTotal
No Reads
droRho1
TGGCATTAGGTCG--TAGTATGCGATTAT---TCGCTAGAGCTCTGAGAGTGGTGAGTCAAGTGG--------------------ATGATATACAGTGGATATTGGTTAAGAGAAACTACTA-C--------TA---A------------------------------ATTACTGACTCTGTTCTACTAATTAAAACTAGCTGA----------------------------------------------TCTT--ATAGGCTTTATA-TGCAAGCAATTCCAAAGTTATTT-CAGATTTATTTTTCTAAAACAATTAAATAATGCTGTTAATTCTGAAATCACTAGGTGTCA--AGACTTGTTGCTCTTTATTTTGTTAATTTTATTGCTTTATT-TTGTTTTTCTTAACCCACTTCTACTGC-----------------AATTTAACCAC-TCGTGCCAACTGATTA--ATGC-----GTTGATTCTGATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCTT------AGGAA--GTATAGAATTCGACA----------------------------TTSizeHit CountTotal NormTotal
No Reads
droFic1
TGGCATTAGGTCG--TAGTATGCGATTAT---TCGCTAGAGCTCTGTGAGTGGTGAGTCGATTGG-------------------ATGTGAACACA-------CCGGTAAAGAGAAACTATATA---------------------AGGGATGCTAATTAATATTATTATTTTACCGATA---------------------GAGCAATCTTAAATT-GGAAATTTAAAATGTTAT-----------------------------------TGACAA---------------CCTTTTGT-TTAT------------------------------------------------CAGT---------------------------------------ATTGTAGTTTCTCTTAATCTACTTGAACTGC---------------AC------------TTGAGC---CTGATTA--ATGT-----TTTGATTTTTATTGCAGATTGGCCGCGTGAC----TGCTGATAAGTGCAT------AGAG---GTATAGGATACGACT----------------------------TTSizeHit CountTotal NormTotal
No Reads
droKik1
TGGCATCAAGTCG--TAGTATGCGATTAT---TCGCTAGAGCTCTGTGAGTGGTGAGTAAATTGG-------------------CTGTGAACACAGTGAGTGCTGGGTCAGAGGAACA---TATATAA-----------------------------------------------------------------------------------------------------------AAGA---------GAATTT--ACAGTCTAAA---------------TAAAATAGTAA-AGCT-TTAT---------------------T-------------------------T----TT-------------------------------------ATT-AAGTTTCTCTCAACCCATTTCACTTGA-----------------GCTTCAAGCACCTCTACCGAACTGATTA--A---------TTGATTTCCATTGCAGATTGGCCGCGTGATTGACTGCTGATAAGTGCAT------TGCGAGTATATAGGATACGACA----------------------------TTSizeHit CountTotal NormTotal
No Reads
droAna3
TGGCATTAGGTCG--TAGT-------------TTGCTATAGATCTGAGAGTGGTGAGTAGT-------------------------GCGATAGCAG-----------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------A-TCGT-AAAT---------------------T-------------------------GTCTTTTTGT--------------------------------------AGGATT----------------------------------------------------------AAAC---A--ACGA-----TATT-TATGTATTTCAGATTGGTCGCGTGAT----TGCTTCG---------------AGG---GTATTTGATAGAACA----------------------------ATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGTCGCGTGAT----TGCTTCG---------------AGG---.............................................2514.004003010
.GGCATTAGGTCG--TAGT-------------TTGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.004200020
................AGT-------------TTGCTATAGATCTGAGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003001020
....ATTAGGTCG--TAGT-------------TTGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003000003
.................GT-------------TTGCTATAGATCTGAGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003010020
................................TTGCTATAGATCTGAGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002001010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGAT----TGCTTCG---------------AGG---GT...........................................2012.002000020
.................................TGCTATAGATCTGAGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002002000
................AGT-------------TTGCTATAGATCTGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002001001
.................GT-------------TTGCTATAGATCTGAGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000002
.GGCATTAGGTCG--TAGT-------------TTGCTATAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
.GGCATTAGGTCG--TAGT-------------TTGCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............TAGT-------------TTGCTATAGATCTGAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAT----TGCTTCG---------------AGG---GTA..........................................2011.001100000
..GCATTAGGTCG--TAGT-------------TTGCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...CATTAGGTCG--TAGT-------------TTGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
................AGT-------------TTGCTATAGATCTGAGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG---GTATTTGATAGAACA----------------------------AT2011.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTCG---------------AGG---GTATTTGAT....................................1911.001000010
.....................................ATAGATCTGAGAGTGGTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAT----TGCTTCG---------------AGG---GT...........................................1911.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCGTGAT----TGCTTCG---------------AGG---GT...........................................2211.001010000
................AGT-------------TTGCTATAGATCTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCGTGAT----TGCTTCG---------------AGG---G............................................2111.001100000
TGGCATTAGGTCG--TAGT-------------TTGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------AGG---GTATTTGATAGAACA----------------------------..1911.001000001
.GGCATTAGGTCG--TAGT-------------TTGCTATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..GCATTAGGTCG--TAGT-------------TTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGTCGCGTGAT----TGCTTCG---------------AGG---GT...........................................2711.001100000
..........................................TCTGAGAGTGGTGAGTAGT-------------------------GCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGCGTGAT----TGCTTCG---------------AGG---.............................................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAT----TGCTTCG---------------AGG---GTA..........................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGCGTGAT----TGCTTCG---------------AG.................................................2011.001100000
...........CG--TAGT-------------TTGCTATAGATCTGAGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGAT----TGCTTCG---------------AGG---GC...........................................2011.001010000
.....TTAGGTCG--TAGT-------------TTGCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
.....TTAGGTCG--TAGT-------------TTGCTATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
......TAGGTCG--TAGT-------------TTGCTATAGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
............................................TGAGAGTGGTGAGTAGT-------------------------GCGATAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGTCGCGTGAT----TGCT.....................................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT----TGCTTCG---------------AGG---GTATTTGATA...................................2311.001000010
................AGT-------------TTGCTATAGATCTGAGAGTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
....................................................GTGAGTAGT-------------------------GCGATAGCAG-----------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------A-TCGT-..................................................................................................................................................................................................................................................................................................2511.001000010
droBip1
TGGCATTAGGTCG--TAGT-------------TTGCTATAGATCTGAGAGTGGTGAGTAGTGTGA---TTCGAATCAAAATTGGATG--------------------------AAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTTT----------TCC-----------------ATTCTATCTAT-TATTGATAAAAGAATG--ATGA-----TTTTTTATTCATTTCAGATTGGTCGCGTGAT----TGCTTCG---------------AGG---GTATATGATAGAACA----------------------------ATSizeHit CountTotal NormTotal
No Reads
dp5
AG-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC------------TCGAACAAACTGATTA--ATGC-----TCTGATT----TTACAGATTGGGCGAGTGAC----TGCTGATAAGAGAAT------AAGG---A--------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGCGAGTGAC----TGCTGATA.................................................................2112.0020000002000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCGAGTGAC----TGCTGATAA................................................................2312.0020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGCGAGTGAC----TGCTGATAA................................................................2411.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGCGAGTGAC----TGCTGATAAGAGAA...........................................................2711.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGCGAGTGAC----TGCT.....................................................................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGAGTGAC----TGCTGATAAG...............................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCGAGTGAC----TGCTGAT..................................................................2111.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCGAGTGAC----TGCTGATA.................................................................2211.0010000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCGAGTGAC----TGCTGATAAG...............................................................2211.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGCGAGTGAC----TGCTGATA.................................................................2311.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGTGAC----TGCTGATAAGA..............................................................2011.0011000000000
droPer2
AG-CAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAGCAAACTGATTA--ATGT-----TCTGATT----TTACAGATTGGTCGAGTGAC----TGCTGATAAGTGAAT------AAGG---A--------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGAC----TGCTGATAAGTG.............................................................1913.003300000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGAC----TGCTGATAAGT..............................................................1912.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGAC----TGCTGATAAGTGA............................................................2112.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTCGAGTGAC----TGCT.....................................................................1812.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGAC----TGCTGATAAGTGAAT------....................................................2311.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGTCGAGTGAC----TGC......................................................................1811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAC----TGCTGATAAGTGAAT------....................................................2011.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGTCGAGTGAC----TGCTGATAAGTGA............................................................2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGTCGAGTGAC----TGCT.....................................................................1911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATAAGTGAAT------AAGG---A--------------------------------------------1811.001010000
droWil2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT----TGCTGATAAGTCTAT------ATAT---GAGT-GAGTGTGTTT----------------------------GGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTAT------ATAT---GAGT-GAGTGTGT................................2312.00200110
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGTCTAT------ATAT---GAGT-GAGT....................................2211.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAT------ATAT---GAGT-GAGTGTGT................................2111.00100001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGTCTAT------ATAT---GAGT-GAGT....................................2311.00100001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------ATAT---GAGT-GAGTGTGTTT----------------------------..2011.00100001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAT------ATAT---GAGT-GAGTGTG.................................1911.00100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTCTAT------ATAT---GAGT-GA......................................2211.00100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTCTAT------ATAT---GAGT-........................................2011.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------ATAT---GAGT-GAGTGTGT................................1840.25100001
droVir3
TG-CATTGGATTTTATAGTATATAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------GTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...CATTGGATTTTATAGTATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000020000000000000000000000000000000000
TG-CATTGGATTTTATAGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
TG-CATTGGATTTTATAGTATATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....TTGGATTTTATAGTATATAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
........GATTTTATAGTATATAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------GT2111.001000000000000000001000000000000000000000000000000000000000000000
....ATTGGATTTTATAGTATATAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------GT2511.001000000000000000001000000000000000000000000000000000000000000000
.....TTGGATTTTATAGTATATAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................2111.001001000000000000000000000000000000000000000000000000000000000000
TG-CATTGGATTTTATAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
TTGCATTGAGTTT--TAGATTATTATTAA-------TGTGGCTGTGTAAGTAGTTATATAAGTGCTCACTGAATTCA--------------------------TACTTATGTAGAGTTC--------TTC-GTT---TCCAGTT---------------------------------------------------------------------TGTGAGATTTGGGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGAACTGA-----------------ACAATAAGGAC-TCGCTGGAACTGATCCTAATTGAACGATC-----------------------TGTGAA----TATA--TGTGTGTGT------GTAC---GCTTTGGAGTGA-CTGGACCCCATCTGAACGGTCATGGAATATGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAATTGAACGATC-----------------------TGTGAA----T........................................................................2412.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GTAC---GCTTTGGAGTGA-CTGG............................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTGA-CTGGACCCCATCTGAAC...............2511.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT------GTAC---GCTTTGGAGTGA-CT..............................2211.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAACGGTCATGGAATAT..2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAATTGAACGATC-----------------------TGTGAA----TATA--T..................................................................2811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA--TGTGTGTGT------GTAC---GCTTTG.......................................2211.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----------------ACAATAAGGAC-TCGCTGGAACT............................................................................................................................2411.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGGAACTGATCCTAATTGAACG.............................................................................................................2511.001100000
.............................................................................................................................................................................................................................TTGGGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGAACTGA-----------------AC.................................................................................................................................................2011.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------TGTGAA----TATA--TGTGTGTGT------GTAC---GC...........................................2611.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-TCGCTGGAACTGATCC.......................................................................................................................1911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTAATTGAACGATC-----------------------TGTGAA----T........................................................................2311.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGAC-TCGCTGGAACTG...........................................................................................................................2011.001000001
..........................................................................................................................................................................................................................GATTTGGGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGAACT......................................................................................................................................................................1911.001000001
...........................................................................................................................................................................................................................ATTTGGGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGAACTGA-----------------ACA................................................................................................................................................2311.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT------GTAC---GCTTTGGAGT...................................2011.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----TATA--TGTGTGTGT------GTAC---GCTT.........................................2311.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGAC-TCGCTGGAACT............................................................................................................................1911.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAACTGA-----------------ACAATAAGGAC-TCGCT..................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGAACGATC-----------------------TGTGAA----TATA--TGTGT..............................................................2711.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGAACGATC-----------------------TGTGAA----TATA--...................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGAACGATC-----------------------TGTGAA----TAT......................................................................2211.001100000
..............................................................................................................................................................................................................................TGGGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGAACTGA-----------------ACA................................................................................................................................................2011.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------ACAATAAGGAC-TCGCTGGAACTGATCCT......................................................................................................................2911.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGAACGATC-----------------------TGTGAA----T........................................................................1911.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGAACGATC-----------------------TGTGAA----TAT......................................................................2111.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---GCTTTGGAGTGA-CTGGACCC........................2211.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTGA-----------------ACAATAAGGAC-TCGCTGGAACTG...........................................................................................................................2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGGAC-TCGCTGGAACTG...........................................................................................................................2111.001000001
TTGCATTGAGTTT--TAGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501100000
....................TATTATTAA-------TGTGGCTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000001

Generated: 05/19/2015 at 12:30 AM