ID:

dsi_11385

Coordinate:

3r:17183155-17183304 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-32.9	-32.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATTGTTGCTTATTTTATTATAGTTCTATACAAATCGAACAAGTTTGTATATATCTATAGAACAGGTGCGTCATCTGCTTGACAGAATTCTCTGAAAGCTTCTTGACAGTTTCTTAATTAGACGCCAAATAAATCTGATTAGCGGCCTTCAACTAATGGAGAAACTCACCTCCACCATTTCCACTTGTTATATTTTTCCAGCGCAAAATGCATTTTTAACATCAGCAGCTACGAAAACAGCAACAGCATTA ************************************************.....(((.((((((((.((((...((((..((((....)))).))))....)))).(((..(((((((((...........))))))))).)))..........(((((........))))).......)))))))).)))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	M023 head	O002 Head	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	M024 male body
......GCTTATTTTATTATAGTTC.................................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	1	0	0	0
...............................................................................AACAGAATTCTTTGAAAGCT.......................................................................................................................................................	20	2	1	1.00	1	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................ACATCAGCAGATACGA.................	16	1	3	1.00	3	0	0	0	0	0	3	0	0
.........................................................................................................................................................AATGGGGAAACTCACCCTCACCATT........................................................................	25	3	1	1.00	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTTTTAACATCAGCAGCTACGAAAACAGC..........	29	0	1	1.00	1	0	0	1	0	0	0	0	0
................................................................................ACAGAATTCTCTGAAAGCTTCT....................................................................................................................................................	22	0	1	1.00	1	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................AACATCAGCAGCTACGAAAACAGCAA........	26	0	1	1.00	1	0	0	0	0	0	0	1	0
...............................................................................................................................................................GAAACTCACCCTCACCATT........................................................................	19	2	2	0.50	1	1	0	0	0	0	0	0	0
.......................................................................................................................................................CTAAGGGTGAAACTCGCCT................................................................................	19	3	17	0.18	3	0	0	0	0	0	0	0	3
..............................................................................GAACAGAATTCTTTGAAAGCT.......................................................................................................................................................	21	3	10	0.10	1	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................CATCAGCAGATACGATA...............	17	2	19	0.05	1	0	0	1	0	0	0	0	0

Anti-sense strand reads

TAACAACGAATAAAATAATATCAAGATATGTTTAGCTTGTTCAAACATATATAGATATCTTGTCCACGCAGTAGACGAACTGTCTTAAGAGACTTTCGAAGAACTGTCAAAGAATTAATCTGCGGTTTATTTAGACTAATCGCCGGAAGTTGATTACCTCTTTGAGTGGAGGTGGTAAAGGTGAACAATATAAAAAGGTCGCGTTTTACGTAAAAATTGTAGTCGTCGATGCTTTTGTCGTTGTCGTAAT ************************************************.....(((.((((((((.((((...((((..((((....)))).))))....)))).(((..(((((((((...........))))))))).)))..........(((((........))))).......)))))))).)))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M023 head	M024 male body	SRR553486 Makindu_3 day-old ovaries
..........................................................................................................................................................................................................................GTAGTCGTCTATGCTATGGTC...........	21	3	2	1.00	2	2	0	0	0	0	0
............................................................................................................................................................................TGGCAAAGGTCAACAATA............................................................	18	2	10	0.10	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................TGTAGTCGTCTATGCTAGT..............	19	3	20	0.10	2	2	0	0	0	0	0
....................................................................................................................................AGACTGATCTCCGCAAGT....................................................................................................	18	3	20	0.10	2	0	0	0	1	1	0
......................................................................................................................................................................................................................................GCTTTTGGCGTTGGCGTA..	18	2	12	0.08	1	0	1	0	0	0	0
...........................................................................................................................................................................................ATATAAAAAGTTAGCGTTTTAT.........................................	22	3	14	0.07	1	1	0	0	0	0	0
...................................................................................................................................................AGTTGATTACATCGTTG......................................................................................	17	2	20	0.05	1	0	1	0	0	0	0
......CGAATCAAGTAATATC....................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1
.......................................................................................AGAGACTTTTGAAGGAC..................................................................................................................................................	17	2	20	0.05	1	0	1	0	0	0	0

Generated: 04/23/2015 at 02:38 PM