ID:

dsi_11368

 Coordinate:

3l:16370590-16370683 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_16370197_16370589_-]; CDS [3l_16370197_16370589_-]; CDS [3l_16370684_16370773_-]; exon [3l_16370684_16370932_-]; intron [3l_16370590_16370683_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------##################################################
TGGACAGGCACTTGACATTCCCGCTGCTGGAGTTCTTGTGCGGCAAGGAGGTTAGAAAAGCGACCAGGCGGTGCTCCGCTGGCGGTTGCCGAGTCACCAGTACATAACTATGGGAAATCTACATATGTGTGACTTTCTTTGCAGATCTACAACCAGCAGGAGCTGCTGGAGTACATTTTGGAGACGGTGAACAA
**************************************************.........((((((.(((((....)))))...)))))).(((((((....(((((....(((.....)))..)))))))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M023
head
...........................TGGAGTTCTTGTGCGGCAAGGAGATC............................................................................................................................................. 26 2 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGCTGGAGTACATTTTGGAGACGGT...... 25 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................TGGAGTACATTTTGGAGACGGTGAACA. 27 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0 0
..........................................................................................................................................AAGGAGATCTACAACCAGCAGGAGC............................... 25 3 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................GGAGCTGCTGGAGTACATTTTGG............. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................CCCGCTGCTGGAGTTCTTGTGCGGCAAGG.................................................................................................................................................. 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................TGGAGTACATTTTGGAGACGGTGAAC.. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................CCCGCTGCTGGAGTTCTTGTGCG........................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GCTGCTGGAGTACATTTTGGAGACGG....... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........ACTTGACATTCCCGCTGCTGGAGTT................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CAGGAGCTGCTGGAGTACATTTTGGA............ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...........................TGGAGTTCTTGTGCGTCAAGGAGATC............................................................................................................................................. 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGGAGCTGCTGGAGTACATTTTGGAGAC......... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................ATTTTGGAGACGGTGAAC.. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................GCTGCTGGAGTACATTTTGGAGAC......... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................TCCCGCTGCTGGAGTTCTTGTGCGGCA..................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGCTGGAGTACATTTTGGAGACGG....... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................TGCTGGAGTACATTTTGGAGACGGTG..... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................GGAGCTGCTGGAGTACAT.................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ATCTACAACCAGCAGGAGCTG............................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.........................GCTGGAGTTCTTGTGCGGCAAGGA................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................TCCCGCTGCTGGAGTTCTTGTGCGG....................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGCTGGAGTACATTTTGGAGACGG....... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................AGCTGCTGGAGTACATTTTGGAGACGG....... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................CTTCCCGCTGCTGGAGTTCTTGTGC......................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................AGCTGCTGGAGTACATTTTGG............. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...........................GGGAGTTCTTGAGCGGCGAGGA................................................................................................................................................. 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CTACAACCAGTAGGA................................. 15 1 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
...................................TTGTGCGGCAAGGAGATC............................................................................................................................................. 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................AAATCTTCGTATGCGTGAC............................................................. 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................TGGAGACGGTGATCA. 15 1 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TACAAGCAGTAGGAGCT.............................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCTGTCCGTGAACTGTAAGGGCGACGACCTCAAGAACACGCCGTTCCTCCAATCTTTTCGCTGGTCCGCCACGAGGCGACCGCCAACGGCTCAGTGGTCATGTATTGATACCCTTTAGATGTATACACACTGAAAGAAACGTCTAGATGTTGGTCGTCCTCGACGACCTCATGTAAAACCTCTGCCACTTGTT
**************************************************.........((((((.(((((....)))))...)))))).(((((((....(((((....(((.....)))..)))))))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
...............................................................................................................................................CTAGATGTTGGTCGTCCTCGA.............................. 21 0 1 2.00 2 2 0 0 0 0
.....................TCGACGACCTCAAGAACACC......................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0
...................................................................................................................................AGAAAGAAACGTCTAGATT............................................ 19 2 7 0.14 1 0 0 1 0 0
.................................................CCAATCTTATCGCTGCT................................................................................................................................ 17 2 10 0.10 1 0 0 0 1 0
..............................................................................................................................................................................TTAAACCTCTGCCTCTTG.. 18 2 11 0.09 1 0 0 0 1 0
......................................................................................................................................AAGAAACATCTAGATGTAAG........................................ 20 3 14 0.07 1 0 0 0 0 1
..........................................................................................................................................AAAGCCTAGATGTGGGTCG..................................... 19 3 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 04:21 AM