ID:

dsi_11323

 Coordinate:

3r:4206300-4206357 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.2 -4.9 -4.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAATCCTGCGCCAGGAGTTCAATAAGAAGGGCACCCAAACGAAGATCACGGTAAGTGACCTAGCTCTTTCAGTTCGTATGAGTACTTCTAATGATGGACGCATTTCAGAGCATCAGCCCTGGTGTCGTGGCCACTGAAATTTTCGAAGCCGGCTCCTG
**************************************************.....(((....(((((.(((....(((....)))......))).))).))...))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 M023
head
 M025
embryo
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
.........GCCAGGAGTTCAATAAGAAGGGC.............................................................................................................................. 23 0 1 3.00 3 0 3 0 0 0 0 0 0 0
........................................................................................................CACGAGCATCAGCCCTGGTGTCGT.............................. 24 3 1 3.00 3 2 1 0 0 0 0 0 0 0
.............................................................................................................................CGTGGCCACTGAAATTTTCGAAGCC........ 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...................................................................................................................................CACTGAAATTTTCGAAGCCGGCT.... 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...............................................................................................................ATCAGCCCTGGTGTCGTGGC........................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0
..................................................................................................................AGCCCTGGTGTCGTGGCCACTGAAAT.................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................TTTCAGTTCGTATGAGTACTT....................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............GAGTTAACTAAGAAGGGC.............................................................................................................................. 18 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................GAAATTTTCGAAGCCGGCTCCTG 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................GGCCACTGAAATTTTCGAAGCCGGCTCCT. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................GAGCATCAGCCCTGGTGTCGTGGC........................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................TCTTTCAGTTCGTATGAGTACT........................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................GGCCACTGAAATTTTCGA............ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................CTGAAATTTTCGAAGCCGGC..... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................................ACCCAAACGAAGATCACG............................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................GAAATTTTCGAAGCCGGCTCC.. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTAAGTGACCTAGCTCTTTCAGTT.................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....CTGCGCCAGGAGTTCAATAAGAA.................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................GCATCAGCCCTGGTGTCGTGGCCACTGA..................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................GAGTACTTCTAATGATGGACG.......................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................GCTCTTTCAGTTCATACGGGTA.......................................................................... 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0
..............GAGTTCAATAAGAAGGGC.............................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................ACGAGCATCAGCCCTGGTGTCGT.............................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................CACCCAAACGAAGATCACGAGC......................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................GTCGCGGCCACTGAAATTTT............... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................ATCAGCCCTGGTGTCGTGGCCACT....................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................ACCCAAACGAAGATCACGA........................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................AGCCCTGGTGTCGTGGCCACTGAA.................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................CATTTCAGAGCATCAGCCCTGGT................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................CCCTGGTGTCGTGGCCACTG...................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................ACTGAAATTTTCGAAGCCGGC..... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................GGTTGTCGTGGCCACTGAAATT................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GGTGTCGTGGCCACTGAAATTT................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................AATTTTCGAAGCCGGCTCCTG 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................GCATCAGCCCTGGTGTCGTGGCCACTG...................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................ATCAGCCCTGGTGTCGTGG............................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................ATTTTCGAAGCCGGCTCCT. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................GTTCAATACGAAGGGCTC............................................................................................................................ 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0
.......GCGCTAGTAGTTCAAT....................................................................................................................................... 16 2 20 0.20 4 0 0 0 0 0 0 0 4 0
...........................................................................................................TAGCCTCAGCTCTGGTGTC................................ 19 3 8 0.13 1 0 0 1 0 0 0 0 0 0
..................................................................................................................AGTCCTGGTGTCGTCTCCA......................... 19 3 14 0.07 1 0 0 0 1 0 0 0 0 0
................................................................TCTTTCAGATCGTAT............................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTTAGGACGCGGTCCTCAAGTTATTCTTCCCGTGGGTTTGCTTCTAGTGCCATTCACTGGATCGAGAAAGTCAAGCATACTCATGAAGATTACTACCTGCGTAAAGTCTCGTAGTCGGGACCACAGCACCGGTGACTTTAAAAGCTTCGGCCGAGGAC
**************************************************.....(((....(((((.(((....(((....)))......))).))).))...))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.....GACGCGGTCCTCAAGTTATTC.................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0
.............................CCGTGGGTTTGCTTCTAGT.............................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0
.....GACGCGGTCCTCAAGTTATT..................................................................................................................................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0
.......CGCGGTCCTCAAGTTATTCTT.................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........GCGGTCCTCATTTTATTC.................................................................................................................................... 18 2 2 0.50 1 0 0 0 1 0 0 0 0
........GCGGTCCTCAAGTTATTCT................................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0
..........................................................GGATCGAGACAGTCA..................................................................................... 15 1 3 0.33 1 0 0 1 0 0 0 0 0
...............................................TGGCATTCACTGGAT................................................................................................ 15 1 3 0.33 1 0 0 1 0 0 0 0 0
.............................................................................................................................................AAGCTTCGGCCGAGT.. 15 1 10 0.20 2 0 0 2 0 0 0 0 0
.........................................................TGAATCTACAAAGTCAAGC.................................................................................. 19 3 20 0.10 2 0 0 0 0 1 0 0 1
...............................................................................................................TAGTGGGGACCACAG................................ 15 1 12 0.08 1 0 0 0 0 0 1 0 0
...........................................................................................ACTACCTGCGTGAACTC.................................................. 17 2 17 0.06 1 0 0 1 0 0 0 0 0
......................................TGCTGCCAGTGCCATT........................................................................................................ 16 2 19 0.05 1 0 0 0 0 0 0 1 0
..........................................................GGATCGAGACAGTCAC.................................................................................... 16 2 19 0.05 1 0 0 1 0 0 0 0 0
.........................................................GGGATCGGGAAAGTCA..................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0

Generated: 04/23/2015 at 10:50 PM