dsi_11312

CCGTTGTGCCGGCCCAGCTCAAGGAGACGCCGCTCAAAAGTGACCGTCGGGTAAGTGTCTTTCGAGAAAAATATGCCTCGAAAAAAAATCCGAAACCAAAACCAAAAACCCCCGTCAATGGATTAAATCAGAACCTCTAGTTCCCCGAAATCTGTGGATTAAATGAAGCGAACCAAACCGAGAATTTCCCTAATTGAGAGCCACCCACTTCGAGCTCGAGTTGATTTCCATTCGCGACTGTGGGCGACTG ****************************************************************************************************************((.(((((((......((((.....)))).....))))))).))...........*******************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	M023 head	M024 male body	O002 Head	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
..................................................................................................................TCAATGGATTAAATCAGAACCT..................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................CTGTGGATTAAATGAAGC.................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.................................................................GAAAAATATGCCTCGAAAAAAAAATCC..............................................................................................................................................................	27	3	1	1.00	1	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................ATTTCCATTCGCGACTGTGGGCGACT.	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..........................ACGCCGCTCAAAAGTGACCGT...........................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.......GCCGGCCCAGCTCAA....................................................................................................................................................................................................................................	15	0	1	1.00	1	0	0	0	0	0	1	0	0	0
.......................................................TGTCTTTCGAGAAAAATATGC..............................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0	0	0	0
...............AGCTCAACGAGACGCCGCTCAAA....................................................................................................................................................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0
.....................AGGAGACGCCGCTCAAAAGTGACCGT...........................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.......GCCGGCCTAGCTCAA....................................................................................................................................................................................................................................	15	1	5	0.20	1	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................ACCAGACCGAGAATT................................................................	15	1	7	0.14	1	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................GCCACCCACTCCCAGCTCG................................	19	2	7	0.14	1	0	0	0	0	0	0	1	0	0
.....................................................................AAGATGCCGCGAAAAAAAA..................................................................................................................................................................	19	2	9	0.11	1	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................TCCATGCGCTACTGTGG.......	17	2	12	0.08	1	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................TCCATTTGCGACTAGGGGC.....	19	3	13	0.08	1	0	0	0	0	0	0	1	0	0
.................................TTAATAGTGACGGTCGGG.......................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	1

GGCAACACGGCCGGGTCGAGTTCCTCTGCGGCGAGTTTTCACTGGCAGCCCATTCACAGAAAGCTCTTTTTATACGGAGCTTTTTTTTAGGCTTTGGTTTTGGTTTTTGGGGGCAGTTACCTAATTTAGTCTTGGAGATCAAGGGGCTTTAGACACCTAATTTACTTCGCTTGGTTTGGCTCTTAAAGGGATTAACTCTCGGTGGGTGAAGCTCGAGCTCAACTAAAGGTAAGCGCTGACACCCGCTGAC *******************************************************************************((.(((((((......((((.....)))).....))))))).))...........****************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
.................GAGTTCTTCACCGGCGAGTTTT...................................................................................................................................................................................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0
....ACACGGCCGGGTCGGTTT....................................................................................................................................................................................................................................	18	2	9	0.22	2	0	0	2	0	0	0	0	0
................CGAGTTCTTCTGCGTCAAGT......................................................................................................................................................................................................................	20	3	13	0.15	2	0	0	0	2	0	0	0	0
.......................................................................................................TTTTTGGGGGCTGTTACTT................................................................................................................................	19	2	7	0.14	1	0	0	0	0	1	0	0	0
.................................................................................................................................TCTTGGAGATAAAGGCGCC......................................................................................................	19	3	9	0.11	1	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................CACGGTGGGTGAATCTCG...................................	18	2	10	0.10	1	0	0	0	0	0	1	0	0
.........................................................................................................................................................................CTGGGTTTGGCTCTT..................................................................	15	1	12	0.08	1	1	0	0	0	0	0	0	0
...............................................................................................................................................AGCCTTTAGACACCTAGTTT.......................................................................................	20	3	14	0.07	1	0	0	0	0	0	0	1	0
.................................................................................................................................TGTTGGAGAGAAAGGGGCT......................................................................................................	19	3	14	0.07	1	0	1	0	0	0	0	0	0
.................................................................................................................................TCTTGGAGATGAAGGGGTC......................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0	0	0
................AGAGTTCCACTGCGGC..........................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:8458599-8458848 +	dsi_11312	CCGTTGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAAAGTGACCGTCGGGTAAGTGTCTTTC--GAGAAAAATATGCCTCGA--------------------------------A--AAAAAA----------TCCGAAACCAAAACC-AAAAACC------------CCC--GTC--------------AATGGATTAA-ATCAGAACCT-CTAGT-TCC-CCGAAATC--------------T--------------------------------------------GTGGATTAAATGAA------------------------------------------------GCGAAC--------------------CAAACC-GAGAATTTCCCTAATTGAGAGC----------------------------------------CACCCACTTCGAGCTCGAGTTGATTTCCATTCGCGAC--------------TGTGGGCGAC-------------TG
droSec2	scaffold_0:947226-947474 +		CCGTTGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAAAGTGACCGTCGGGTAAGTGTCTTTC--GAGAAAAATATGCCTCGA--------------------------------A--AAAAAA----------TCCGAAGCCAAAACC-AAAAA-C------------CAC--GTC--------------AATGGATTAA-ATCAGAACCT-CTAGT-TCC-CCGAAATC--------------T--------------------------------------------GTGGATTAAATGAA------------------------------------------------GCGAAC--------------------CAAACC-GAGAATTCCCCTAATTGAGAGC----------------------------------------CACCCACTTCGAGCTCGAGTTGATTTCCATTCGCGAC--------------TGTGGGCGAC-------------TG
dm3	chr3L:8669399-8669650 +		CCGTTGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAAAGTGACCGTCGGGTAAGTTTCTTTC--GAGAAAAATAAGACTCGA--------------------------------A--AA--------AAAAAATCCAAAGCCAAAAAC-AAAAAAC------------CCC--GTC--------------AATGGATTAA-ATCAGAACCT-CTAGT-TCC-CCGAAATC--------------T--------------------------------------------GTGGATTAACTGAA------------------------------------------------GCGAAC--------------------CAAACC-GAGAATTCCCCTAATTGAGAGC----------------------------------------CACCCACTTCGAGCTCAAGTTGATTTCCATTCGCGAC--------------TGTGGGCGAC-------------TG
droEre2	scaffold_4784:5376161-5376419 -		CCGTCGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAAAGTGACCGTCGGGTAAGTGTCTTTC--GAGAAAAGCAGG---C-------------------AATGAA---------------AA-----GCCAAATCAAAA--------------GCC------------CCC--CAC--------------AATGGATTAA-ATCAGAACCC-CTAGT-TCC-CCGAAATC--------------T--------------------------------------------GTGGATTAAATAAA------------------------------------------------CCGAACCGAACTAAATCAAACCAAGCCAAACC-GAGAATTCCCCTAATTGAGAGC----------------------------------------CACCCACTTCGAGCTCAAGTTGATTTCCATTTGCGAC--------------TGTGGGCGAC-------------TG
droYak3	3L:3242337-3242591 -		CCGTTGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAAAGTGACCGTCGGGTAAGTGTCTATC--GAGTAAACTAAG-CTCGA--------------------------------A--AA--A-----------------CCCAAAACCCCAAAACC------------TCC--CGC--------------AATGGATTAA-ATCAGAACCG-CTGGT-TCCCCCGAAATC--------------T--------------------------------------------GTGGATTAAATGAA------------------------------------------------CCGAA----------GCAAACCAAACCAAATC-GAGAATTCCCCTAATTGAGAGC----------------------------------------CACCCACTTCGAGCTCAAGTTGATTTCCATTCGCGAC--------------TGTGGGCGGC----------GACTG
droEug1	scf7180000408746:485-720 +		CCGTTGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGATCAAAAGTGACCGTCGGGTAAGTGTCTTCTTTGAGAAAAAC---------------------------------------------AAAAA----------TCCCAAACA------------CT--------------CCTC-CA---TCAAACCAAAAATGGATTAA-ATCAGAACCT-CTAGAGTCA-TCGAAAAA-------------AA--------------------------------------------ATGGATTAAATAA------------------------------------------------------------------------------GCC-GAGAATTCCCTTAAATGAGAGCTGC-------------------------------------CACCCACTTCCAGCTCGACTTGATTTTGAAACTT----TG---------CCTGTGGGCGAC-------------TG
droBia1	scf7180000302428:10607792-10608006 +		CCGTTGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAGAGTGACCGTCGGGTAAGTGTCCGCTCCGGGGAGTAC---------------------------------------------AGAGT----------TCC-------------------CCCCAACCACATTCCCCTCGC-------------AAACGGATTAA-GCCAGAACCC-GAAGT-------------------------------------------------------------------------TGGATA------------------------------------------------------------------------------------CCA-GGGAATGCCCTTAAACGAGGGC----------------------------------------CACCCACCTCCGGCGCGACTTGATTTCCACACTC---------------GCTGTGGGCGAC--CCAGCG----CCG
droTak1	scf7180000414445:35690-35871 -		CCGTTGTGCCGGCC------------------------CAGCTGAAGGAGACGCCGCTGAAAAGTGACCGTCGGGTAAGTGTCTAAGCCTC----------------C------------------------------------------------------------------------T--------------CCTCA--------------AAACGGATTAA-ATCAGAGCCC-CC----TAC-CAGTAAAA--------------A--------------------------------------------ATGGATTAAATATA------------------------------------------------------------------------------GC-CAGAATTCCCTTAAACGAGAGCT---------------------------------------CACCAACT-------------------------C---------------ACTGTGGGCGAC--TCTGAGTGGCCTG
droEle1	scf7180000491268:9464-9694 -		CCGTGGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTGAAAAGTGACCGTCGGGTAAGTGTCTTTTCTACGGC------------------------------AAACCG-----AAGAATAAACAAC----------TC-------------------CC--------------CCTCG--------------AAATGGATTAA-AAAAAAACCAAATAGA-ACC-CAGAAAAA--------------T--------------------------------------------ATGGATTAAACCA------------------------------------------------------------------------------GCCAAGAAATTCCCTTAAATGAGAGC----------------------------------------CACCCACTTCGAGCTCGACTTGATTTCCATATGCCATATGC--------CTTGTGGGCGAC-------------TG
droRho1	scf7180000778254:29328-29553 +		CCGTGGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCAGAAAAGTGACCGTCGGGTAAGTGTCTTCCCTGGGAAA--------------------------------------------------AAA----------TCTTGAACCA----------ACC--------------CCTC-C-------------AAATGGATTAAAATCAGAACCC-AAAGT-TCCCCCGAAAATAA----------AAA--------------------------------------------CTGGATTAAATTAA------------------------------------------------------------------------------AT-GAGAATTCCCTTAAATGAGAGC----------------------------------------CACCCACTTCGAGCTCAACTTGATTTCCATATGC---------------CTTGTAGGCGGT---------CGACTG
droFic1	scf7180000453833:857627-857859 +		CCGTTGTTCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAAAGTGACCGTCGGGTAAGTGTCTTCCCCAAA-----------------------------------AAA---AAAAGAA--AAAAAA----------TCTGAAAGAGGG--------GGG--------------CC-TCC--------------AATGGATTAA-ATCAGCAGTC-AAATA-TTC-CCGGAAAA--------------A--------------------------------------------ATGGATTAAATAA------------------------------------------------------------------------------ACC-GAGAATTCCCTTAAACGAGAGC----------------------------------------CAACCACTTCGAGCTCGAATTGATTTCCAAACGC---------------CTTGTGGGCGAC--GC---GTTG--CG
droKik1	scf7180000302474:305418-305715 -		CCGTGGTGCCCGCC------------------------CAGCTCAAGGAAACGCCGCTCAAAAGTGACCGTCGGGTAAGTGTCTTCCCCACCAAA--------------------------------AA----A-AAGA----------------ACGTCCCTA----------------T--------------CCCC-CAAATTTAAACCAA-GT----------------------------------CGGA---------TAA--A---------ATAGGCGCTAAGAG--CTGGA----TTAGAATCGCTTGAATTAAATATTCAGAGCTCCCAAAAAAATTAAAATATATATCTTAAAAAAGAAACGCCACCAATCCGGATTAAA------------GCGCT-CAGAATTCCCTTAATTGAGCAG-------------------------------CACTGC---CTCCCACTTCGCACTC-----GATTTCCAGACTC---------------GCTGTGGGCGAG-------------CA
droAna3	scaffold_13337:7968951-7969143 -		CTGTGGTGCCCGCC------------------------CAGCTTAAGGAAACGCCACTCAAAAGTGACCGTCGGGTAAGTGTCTTCTCCAC----------------CTC---C--TCCC---AAA-AAA---------------AAAACCGAAA-----------------------------A--------------------------------------------------A-CTAGA-TTC-CCTAAAACAGAGACCCA-----C--------------------------------------------TTGGATTAAAATAA---------------------------------------------------------------------------AAGCT-GAGAATTCCCTTAATTGAGAAT----------------------------------------CGCTTACACCCACTTGGAGTCGATTT-----------------------------AGCGAC--------------A
droBip1	scf7180000396541:126776-126961 -		CTGTGGTGCCCGCC------------------------CAGCTTAAGGAGACGCCACTCAAAAGTGACCGTCGGGTAAGTGTCTTCTCCTG----------------------C--TCCC---CAAAAAA---A-----------------GACA-----------------------------A--------------------------------------------------A-CTAGA-TTC-CCTAAAACAGAGACCCA-----C--------------------------------------------TTGGATTAAAATAA---------------------------------------------------------------------------AAGCT-GAGAATTCCCTTAATTGAGAAT----------------------------------------CACTTACACCCACTTCGAGTCGATTTA-----------------------------ACGAC--------------A
dp5	XR_group8:8927607-8927835 -		CTGTGGTGCCAGCACAGACCCAGCAGCAGCAGCAGCAGCAGCACAAGGAGACGCCACTCAAAAGTGATCGTCGGGTAAGTGTCTACCACCC----------------CCCCTTTGCCC-CAACCAAAAAA---A------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAGAAACGTTC-T----TTGGCGTGGATTACATTTT------------------------------------------------------------------------------GA-GA-GATTCTGTTAATTGGGAGACGACACCGACAACGACA---CCGACACCCACCAGAGC---CGC----------------TCGCTTAGCATCGCCCAC--------------TATG---------------------
droPer2	scaffold_50:278371-278598 +		CTGTGGTGCCAGCACAGACGCAGCAGCAGCAGCAGCAGCAGCACAAGGAGACGCCACTCAAAAGTGATCGTCGGGTAAGTGTCTACCACCC----------------CCCCTTTGCCC-CAAC----CAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAGAAACGTTC-T----TTGGCGTGGATTACATTTT------------------------------------------------------------------------------GA-GA-GATTCTGTTAATTGGGAGACGACACCGACAACGACA---CCGACACCCACCAGAGC---CGC----------------TCGCTTAGCATCGCCCAC--------------TATG---------------------
droWil2	scf2_1100000004511:8219705-8219979 -		CCGTAGTGCCCACC------------------------CAGCTAAAGGAGACGCCGCTCAAAAGTGATCGTCGGGTAAGTGTTCAAAAACCAAA---------------------------------AA-------------------AAAAAAAAACTAAAAAA-------------------------------------------------------------------------------TC-CCAAAAAAAA----------AACATGGACTACACAAAAACACAGAGAGAACTATTCCC----TTGGCGCAA--------TC------------------------------------------------------------------------------TA-GA-AAACTTTTCACTCCAAAGAAAAAAAAAACACCAACATATTCAACACCTACAAGAATTTTT-----TTTCGAAAC-----ATTTTTACATCTCCCACTTGTCCACACACA-CATGGGAATCGCCCACAGTTG---A
droVir3	scaffold_13049:6325063-6325164 +		CTGTCGTCTCCACGCAG---CAACAGCAGCAGCAGCAGCAGCACAAGGAGGCGCCAATCAAAAGCGATCGTCGGGTAAGTGTT------GAGAAAGACAAC---C-------------------AAAAAA---------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6680:4639962-4640040 +		CCGTGGTGCCCACC------------------------CAGCTGAAGGAGACACCCATCAAGAGTGACCGCAGGGTAAGTGTCAAATGTGTAA-----------C-------------------AAAAAA---------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_14662:1219-1348 +		CTGTGGTGCCCACC------------------------CAGCTCAAGGAGACCCCCATCAAAAGCGATCGTCGGGTAAGTGTTAAAACAAAACA---------------------------------------A-----------A--AAAACAAAAATCAAAAACCAAAA--------------------------------------------------------------------------------AGAA---------TAAGAA------------------------------------------------------ATAA---------------------------------------------------------------------------ACGCC-AAAAGT-----TAAATTGGAA---------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CCGTTGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAAAGTGACCGTCGGGTAAGTGTCTTTC--GAGAAAAATATGCCTCGA--------------------------------A--AAAAAA----------TCCGAAACCAAAACC-AAAAACC------------CCC--GTC--------------AATGGATTAA-ATCAGAACCT-CTAGT-TCC-CCGAAATC--------------T--------------------------------------------GTGGATTAAATGAA------------------------------------------------GCGAAC--------------------CAAACC-GAGAATTTCCCTAATTGAGAGC----------------------------------------CACCCACTTCGAGCTCGAGTTGATTTCCATTCGCGAC--------------TGTGGGCGAC-------------TG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................TC--------------AATGGATTAA-ATCAGAACCT-......................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................C--------------T--------------------------------------------GTGGATTAAATGAA------------------------------------------------GC.........................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCCATTCGCGAC--------------TGTGGGCGAC-------------T.	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................ACGCCGCTCAAAAGTGACCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GCCGGCC------------------------CAGCTCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................TGTCTTTC--GAGAAAAATATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................AGGAGACGCCGCTCAAAAGTGACCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CCGTTGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAAAGTGACCGTCGGGTAAGTGTCTTTC--GAGAAAAATATGCCTCGA--------------------------------A--AAAAAA----------TCCGAAGCCAAAACC-AAAAA-C------------CAC--GTC--------------AATGGATTAA-ATCAGAACCT-CTAGT-TCC-CCGAAATC--------------T--------------------------------------------GTGGATTAAATGAA------------------------------------------------GCGAAC--------------------CAAACC-GAGAATTCCCCTAATTGAGAGC----------------------------------------CACCCACTTCGAGCTCGAGTTGATTTCCATTCGCGAC--------------TGTGGGCGAC-------------TG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................CGCCGCTCAAAAGTGACCGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	1	0
.......................................AGCTCAAGGAGACGCCGCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
...........GCC------------------------CAGCTCAAGGAGACGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
........................................GCTCAAGGAGACGCCGCTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
....................................................GCCGCTCAAAAGTGACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0

dm3

CCGTTGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAAAGTGACCGTCGGGTAAGTTTCTTTC--GAGAAAAATAAGACTCGA--------------------------------A--AA--------AAAAAATCCAAAGCCAAAAAC-AAAAAAC------------CCC--GTC--------------AATGGATTAA-ATCAGAACCT-CTAGT-TCC-CCGAAATC--------------T--------------------------------------------GTGGATTAACTGAA------------------------------------------------GCGAAC--------------------CAAACC-GAGAATTCCCCTAATTGAGAGC----------------------------------------CACCCACTTCGAGCTCAAGTTGATTTCCATTCGCGAC--------------TGTGGGCGAC-------------TG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................CTCAAAAGTGACCGTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GCCGCTCAAAAGTGACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	7	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................GCTCAAAAGTGACCGTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TCAAAAGTGACCGTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GCCGCTCAAAAGTGACCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GACGCCGCTCAAAAGTGACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CGTTGTGCCGGCC------------------------CAGCTCAAGGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GCCGCTCAAAAGTGACCGTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ACCT-CTAGT-TCC-CCGAAA......................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................CAGCTCAAGGAGACGCCGCTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................AATCCAAAGCCAAAAAC-AAAAAAC------------CC................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAGCTCAAGGAGACGCCGCTCAAAAGTGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GCCGGCC------------------------CAGCTCAAGGAGACGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................C--------------T--------------------------------------------GTGGATTAACTGAA------------------------------------------------GCGAAC--------------------C................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GT-TCC-CCGAAATC--------------T--------------------------------------------GTGG.....................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................GCTCAAAAGTGACCGTCGGTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TCAAAAGTGACCGTCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CCGTCGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAAAGTGACCGTCGGGTAAGTGTCTTTC--GAGAAAAGCAGG---C-------------------AATGAA---------------AA-----GCCAAATCAAAA--------------GCC------------CCC--CAC--------------AATGGATTAA-ATCAGAACCC-CTAGT-TCC-CCGAAATC--------------T--------------------------------------------GTGGATTAAATAAA------------------------------------------------CCGAACCGAACTAAATCAAACCAAGCCAAACC-GAGAATTCCCCTAATTGAGAGC----------------------------------------CACCCACTTCGAGCTCAAGTTGATTTCCATTTGCGAC--------------TGTGGGCGAC-------------TG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................CCGCTCAAAAGTGACCGTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	19.00	19	0	0	0	0	0	0	19
..GTCGTGCCGGCC------------------------CAGCTCAAGGAGACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	7.00	7	0	0	0	0	0	0	7
.......GCCGGCC------------------------CAGCTCAAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...........................................CAAGGAGACGCCGCTCAAAAGTGACCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
...................................................CGCCGCTCAAAAGTGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................ATC--------------T--------------------------------------------GTGGATTAAATAAA------------------------------------------------CCG........................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGATTTCCATTTGCGAC--------------T........................	22	1	1.00	1	0	0	0	0	0	1	0
................................................AGACGCCGCTCAAAAGTGACCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
......................................................CGCTCAAAAGTGACCGTCGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
......................................CAGCTCAAGGAGACGCCGCTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0

droYak3

CCGTTGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAAAGTGACCGTCGGGTAAGTGTCTATC--GAGTAAACTAAG-CTCGA--------------------------------A--AA--A-----------------CCCAAAACCCCAAAACC------------TCC--CGC--------------AATGGATTAA-ATCAGAACCG-CTGGT-TCCCCCGAAATC--------------T--------------------------------------------GTGGATTAAATGAA------------------------------------------------CCGAA----------GCAAACCAAACCAAATC-GAGAATTCCCCTAATTGAGAGC----------------------------------------CACCCACTTCGAGCTCAAGTTGATTTCCATTCGCGAC--------------TGTGGGCGGC----------GACTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................CGCCGCTCAAAAGTGACCGTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6
......................................................CGCTCAAAAGTGACCGTCGGGTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4
...................................................CGCCGCTCAAAAGTGACCGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
....................................................GCCGCTCAAAAGTGACCGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.................................................GACGCCGCTCAAAAGTGACCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................CAAGGAGACGCCGCTCAAAAGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................GCTCAAGGAGACGCCGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................AA----------GCAAACCAAACCAAATC-GA........................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCCATTCGCGAC--------------TGTGGGCGGC----------.....	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................GACGCCGCTCAAAAGTGACCGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GGATTAA-ATCAGAACCG-CTGGT-................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........GGCC------------------------CAGCTCAAGGAGACGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....TGTGCCGGCC------------------------CAGCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................CGCCGCTCAAAAGTGACCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

CCGTTGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGATCAAAAGTGACCGTCGGGTAAGTGTCTTCTTTGAGAAAAAC---------------------------------------------AAAAA----------TCCCAAACA------------CT--------------CCTC-CA---TCAAACCAAAAATGGATTAA-ATCAGAACCT-CTAGAGTCA-TCGAAAAA-------------AA--------------------------------------------ATGGATTAAATAA------------------------------------------------------------------------------GCC-GAGAATTCCCTTAAATGAGAGCTGC-------------------------------------CACCCACTTCCAGCTCGACTTGATTTTGAAACTT----TG---------CCTGTGGGCGAC-------------TG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCGTTGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAGAGTGACCGTCGGGTAAGTGTCCGCTCCGGGGAGTAC---------------------------------------------AGAGT----------TCC-------------------CCCCAACCACATTCCCCTCGC-------------AAACGGATTAA-GCCAGAACCC-GAAGT-------------------------------------------------------------------------TGGATA------------------------------------------------------------------------------------CCA-GGGAATGCCCTTAAACGAGGGC----------------------------------------CACCCACCTCCGGCGCGACTTGATTTCCACACTC---------------GCTGTGGGCGAC--CCAGCG----CCG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCGTTGTGCCGGCC------------------------CAGCTGAAGGAGACGCCGCTGAAAAGTGACCGTCGGGTAAGTGTCTAAGCCTC----------------C------------------------------------------------------------------------T--------------CCTCA--------------AAACGGATTAA-ATCAGAGCCC-CC----TAC-CAGTAAAA--------------A--------------------------------------------ATGGATTAAATATA------------------------------------------------------------------------------GC-CAGAATTCCCTTAAACGAGAGCT---------------------------------------CACCAACT-------------------------C---------------ACTGTGGGCGAC--TCTGAGTGGCCTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCGTGGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCTGAAAAGTGACCGTCGGGTAAGTGTCTTTTCTACGGC------------------------------AAACCG-----AAGAATAAACAAC----------TC-------------------CC--------------CCTCG--------------AAATGGATTAA-AAAAAAACCAAATAGA-ACC-CAGAAAAA--------------T--------------------------------------------ATGGATTAAACCA------------------------------------------------------------------------------GCCAAGAAATTCCCTTAAATGAGAGC----------------------------------------CACCCACTTCGAGCTCGACTTGATTTCCATATGCCATATGC--------CTTGTGGGCGAC-------------TG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCGTGGTGCCGGCC------------------------CAGCTCAAGGAGACGCCGCAGAAAAGTGACCGTCGGGTAAGTGTCTTCCCTGGGAAA--------------------------------------------------AAA----------TCTTGAACCA----------ACC--------------CCTC-C-------------AAATGGATTAAAATCAGAACCC-AAAGT-TCCCCCGAAAATAA----------AAA--------------------------------------------CTGGATTAAATTAA------------------------------------------------------------------------------AT-GAGAATTCCCTTAAATGAGAGC----------------------------------------CACCCACTTCGAGCTCAACTTGATTTCCATATGC---------------CTTGTAGGCGGT---------CGACTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCGTTGTTCCGGCC------------------------CAGCTCAAGGAGACGCCGCTCAAAAGTGACCGTCGGGTAAGTGTCTTCCCCAAA-----------------------------------AAA---AAAAGAA--AAAAAA----------TCTGAAAGAGGG--------GGG--------------CC-TCC--------------AATGGATTAA-ATCAGCAGTC-AAATA-TTC-CCGGAAAA--------------A--------------------------------------------ATGGATTAAATAA------------------------------------------------------------------------------ACC-GAGAATTCCCTTAAACGAGAGC----------------------------------------CAACCACTTCGAGCTCGAATTGATTTCCAAACGC---------------CTTGTGGGCGAC--GC---GTTG--CG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCGTGGTGCCCGCC------------------------CAGCTCAAGGAAACGCCGCTCAAAAGTGACCGTCGGGTAAGTGTCTTCCCCACCAAA--------------------------------AA----A-AAGA----------------ACGTCCCTA----------------T--------------CCCC-CAAATTTAAACCAA-GT----------------------------------CGGA---------TAA--A---------ATAGGCGCTAAGAG--CTGGA----TTAGAATCGCTTGAATTAAATATTCAGAGCTCCCAAAAAAATTAAAATATATATCTTAAAAAAGAAACGCCACCAATCCGGATTAAA------------GCGCT-CAGAATTCCCTTAATTGAGCAG-------------------------------CACTGC---CTCCCACTTCGCACTC-----GATTTCCAGACTC---------------GCTGTGGGCGAG-------------CA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTGTGGTGCCCGCC------------------------CAGCTTAAGGAAACGCCACTCAAAAGTGACCGTCGGGTAAGTGTCTTCTCCAC----------------CTC---C--TCCC---AAA-AAA---------------AAAACCGAAA-----------------------------A--------------------------------------------------A-CTAGA-TTC-CCTAAAACAGAGACCCA-----C--------------------------------------------TTGGATTAAAATAA---------------------------------------------------------------------------AAGCT-GAGAATTCCCTTAATTGAGAAT----------------------------------------CGCTTACACCCACTTGGAGTCGATTT-----------------------------AGCGAC--------------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................CGCCACTCAAAAGTGACCGTCGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................CGCCACTCAAAAGTGACCGTCGGTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
............CC------------------------CAGCTTAAGGAAACGCCACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................AAA-AAA---------------AAAACCGAAA-----------------------------A--------------------------------------------------A-......................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0

droBip1

CTGTGGTGCCCGCC------------------------CAGCTTAAGGAGACGCCACTCAAAAGTGACCGTCGGGTAAGTGTCTTCTCCTG----------------------C--TCCC---CAAAAAA---A-----------------GACA-----------------------------A--------------------------------------------------A-CTAGA-TTC-CCTAAAACAGAGACCCA-----C--------------------------------------------TTGGATTAAAATAA---------------------------------------------------------------------------AAGCT-GAGAATTCCCTTAATTGAGAAT----------------------------------------CACTTACACCCACTTCGAGTCGATTTA-----------------------------ACGAC--------------A	Size	Hit Count	Total Norm	Total
No Reads

dp5

CTGTGGTGCCAGCACAGACCCAGCAGCAGCAGCAGCAGCAGCACAAGGAGACGCCACTCAAAAGTGATCGTCGGGTAAGTGTCTACCACCC----------------CCCCTTTGCCC-CAACCAAAAAA---A------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAGAAACGTTC-T----TTGGCGTGGATTACATTTT------------------------------------------------------------------------------GA-GA-GATTCTGTTAATTGGGAGACGACACCGACAACGACA---CCGACACCCACCAGAGC---CGC----------------TCGCTTAGCATCGCCCAC--------------TATG---------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................GGAGACGCCACTCAAAAGTGATCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................GCAGCAGCACAAGGAGACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................CACTCAAAAGTGATCGTCGGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............ACAGACCCAGCAGCAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................AGCAGCAGCAGCAGCACAAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................GACCCAGCAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................CAGCAGCAGCAGCAGCAGCAGCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0

droPer2

CTGTGGTGCCAGCACAGACGCAGCAGCAGCAGCAGCAGCAGCACAAGGAGACGCCACTCAAAAGTGATCGTCGGGTAAGTGTCTACCACCC----------------CCCCTTTGCCC-CAAC----CAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAGAAACGTTC-T----TTGGCGTGGATTACATTTT------------------------------------------------------------------------------GA-GA-GATTCTGTTAATTGGGAGACGACACCGACAACGACA---CCGACACCCACCAGAGC---CGC----------------TCGCTTAGCATCGCCCAC--------------TATG---------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................GACGCCACTCAAAAGTGATCGTCGGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................GCAGCAGCAGCAGCACAAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0

droWil2

CCGTAGTGCCCACC------------------------CAGCTAAAGGAGACGCCGCTCAAAAGTGATCGTCGGGTAAGTGTTCAAAAACCAAA---------------------------------AA-------------------AAAAAAAAACTAAAAAA-------------------------------------------------------------------------------TC-CCAAAAAAAA----------AACATGGACTACACAAAAACACAGAGAGAACTATTCCC----TTGGCGCAA--------TC------------------------------------------------------------------------------TA-GA-AAACTTTTCACTCCAAAGAAAAAAAAAACACCAACATATTCAACACCTACAAGAATTTTT-----TTTCGAAAC-----ATTTTTACATCTCCCACTTGTCCACACACA-CATGGGAATCGCCCACAGTTG---A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................GACGCCGCTCAAAAGTGATCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.......................................AGCTAAAGGAGACGCCGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAAAC-----ATTTTTACATCTCC..........................................	22	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................ACATGGACTACACAAAAACACAGAGAG............................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0

droVir3

CTGTCGTCTCCACGCAG---CAACAGCAGCAGCAGCAGCAGCACAAGGAGGCGCCAATCAAAAGCGATCGTCGGGTAAGTGTT------GAGAAAGACAAC---C-------------------AAAAAA---------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................GCGATCGTCGGGTAAGTGTT------GAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5
.......................................AGCACAAGGAGGCGCCAATCAAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GCAGCAGCACAAGGAGGCGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCACAAGGAGGCGCCAATCAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ACAAGGAGGCGCCAATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGCAGCAGCAGCACAAGGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CACGCAG---CAACAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAGCAGCAGCAGCACAAGGAGGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................CAAGGAGGCGCCAATCAAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ACGCAG---CAACAGCAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AG---CAACAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................G---CAACAGCAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ACAGCAGCAGCAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CAG---CAACAGCAGCAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCGTGGTGCCCACC------------------------CAGCTGAAGGAGACACCCATCAAGAGTGACCGCAGGGTAAGTGTCAAATGTGTAA-----------C-------------------AAAAAA---------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................AAGGAGACACCCATCAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
....................................................ACCCATCAAGAGTGACCGCAGGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
......................................CAGCTGAAGGAGACACCCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droGri2

CTGTGGTGCCCACC------------------------CAGCTCAAGGAGACCCCCATCAAAAGCGATCGTCGGGTAAGTGTTAAAACAAAACA---------------------------------------A-----------A--AAAACAAAAATCAAAAACCAAAA--------------------------------------------------------------------------------AGAA---------TAAGAA------------------------------------------------------ATAA---------------------------------------------------------------------------ACGCC-AAAAGT-----TAAATTGGAA---------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_11312

3l:8458649-8458798 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-5.1	-4.8	-4.6