ID:

dsi_1130

 Coordinate:

2r:2261057-2261282 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.8 -29.8 -29.8

Flybase annnotation

five_prime_UTR [2r_2261313_2261364_+]; exon [2r_2261313_2261364_+]

No Repeatable elements found

Sense Strand Reads

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------####################
TCTGATAGTCGGGGAACTCAACCATAGCACTCTCTCTTGTTTTTGTGTTGGTAAGTTATTCCTTTTGTTTGTTCGCTACCTTTAGATTGGTGGATTATTTGTTATGATCGGAGGCCTATAGTGCAAATTCATTGATTTCGTATTTATGGAAGTCATCTTGGCAGACTATCATTGCGTGTTTGGACACAACGTTGACTGCAATTGAGAACTAAAAAAGTACACCTAGTTTGTAGATAAGGAAGCTGTCATATTTTTTTTTTTGTATTCAACTAACAGACTAGAGAAATTTCATTTGCATTCGACACGAGCAACACAACTGTCGAATT
*****************************************************************.....((((.(((((........)))))....(((((((.(((.((...((...((((((((((....))))).)))))...))...))))).)))))))...((((((((.(((..(((.....))))))))))).)))))))........************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M053
female body
 M024
male body		 GSM343915
embryo
................................................................................................................................................................................................TGACTGCAATTGAGAACTAAAAAAG............................................................................................................. 25 0 1 5.00 5 2 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTGACTGCAATTGAGAACTAAAAAAG............................................................................................................. 26 0 1 4.00 4 2 0 1 0 1 0 0 0 0
................................................................................................................................................................................................TGACTGCAATTGAGAACTAAAAAAGT............................................................................................................ 26 0 1 3.00 3 0 1 1 0 1 0 0 0 0
.................................................................TGTTTGTTCGCTACCTTTAGATTGG............................................................................................................................................................................................................................................ 25 0 1 3.00 3 2 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................TTTTTGTATTCAACTAACAGACTAGAGA.......................................... 28 0 1 2.00 2 0 1 1 0 0 0 0 0 0
................................................................................................................................................................................................TGACTGCAATTGAGAACTAAAAAA.............................................................................................................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..........................................................................................TGGATTATTTGTTATGATCGGAGGCC.................................................................................................................................................................................................................. 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................TGGACACAACGTTGACTGCAATTGAGA....................................................................................................................... 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0
.....TAGTCGGGGAACTCAACAATAGCTCTC...................................................................................................................................................................................................................................................................................................... 27 2 1 2.00 2 0 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................................AACTAAAAAAGTACATCTAGTTTGTAGA............................................................................................ 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TAACAGACTAGAGAAATTTCATTTGCA............................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TAAAAAAGTACATCTAGTTTGTAGA............................................................................................ 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TGGACACAACGTTGACTGCAATTGAG........................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................................TATGATCGGAGGCCTATAGTGCAAA....................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TAACAGACTAGAGAAATTTCATTTGC.............................. 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0
.......................................................................................TGGTGGATTATTTGTTATGATCGGAGGCC.................................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..TGATAGTCGGGGAACTCAACAATAGCTC........................................................................................................................................................................................................................................................................................................ 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTGGACACAACGTTGACTGCAATTGAG........................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................TTCCTTTTGTTTGTTCGCTACCTTTAGAA............................................................................................................................................................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CTAACAGACTAGAGAAATTTCATTTGC.............................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................TTGTAGATAAGGAAGCTGTCATATT.......................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGCGTGTTTGGACACAGCGTTGACTGC............................................................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TAAAAAAGTACATCTAGTTTGTAGATA.......................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................TGTTATGATCGGAGGCCTACAGTGCAA........................................................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0
......................................................................................TTGGTGGATTATTTGTTATGATCGGA...................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................TTTAGATTGGTGGATTATTTGTTATGA........................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CTGCAATTGAGAACTAAAAAA.............................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
TCTGATAGTCGGGGAACTCAACCAT............................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................CACAACGTTGACTGCAATTGAGAACTAAA................................................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....TAGTCGGGGAACTCAACAATAGCTC........................................................................................................................................................................................................................................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TTGTATTCAACTAACAGACTAGAGA.......................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................TTTTGTTTGTTCGCTACCTTTAGAT............................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................TGGAAGTCATCTTTGCAGACTATCAT.......................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTGACTGCAATTGAGAACTAAAAAAGTACA......................................................................................................... 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAGTTTGTAGATAAGGAAGCTGTCAT............................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................GTTTGTAGATAAGGAAGC................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.....TAGTCGGGGAACTCAACAATAGCTCT....................................................................................................................................................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................TTTGTTCGCTACCTTTAGATTGGTGGA........................................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ACTAAAAAAGTACATCTAGTTTGTAGA............................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAGTTTGTAGATAAGGAAGCTGTCATA............................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................TTTTGTATTCAACTAACAGACTAGAGAA......................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................TTGGTAAGTTATTCCTTTTGTTTGTTCGC.......................................................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................CACAACGTTGACTGCAATTGAGAACTAAAA................................................................................................................ 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................TATGATCGGAGGCCTACAGTGCAA........................................................................................................................................................................................................ 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................TTGGACACAACGTTGACTGCAATTGAGAA...................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................TTTCGTATTTATGGAAGTCATCTT....................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAGTTTGTAGATAAGGAAGCTGTCATATT.......................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTGGACACAACGTTGACTGCAATTGAGA....................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTGACTGCAATTGAGAACTAAAAAA.............................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGCGTGTTTGGACACAACGTTGACTGC............................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................TGACTGCAATTGAGAACTAAAAAAGTA........................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................TACACCTAGTTTGTAGA............................................................................................ 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................TTGGTGGATTATTTGTTATGATCGGAGG.................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................TATTTGTTATGATCGGAGGCCTACAG............................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................TTCAACTAACAGACTAGAGAAATTTCATT................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................TGTTTGGACACAACGTTGACTGC............................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................TGGTAAGTTATTCCTTTTGTTTGTT............................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................TGTTTGGACACAACGTTGACTGCAAT............................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................................TGTGTTGGTAAGTTATTCCTTTTGTT................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TTTTTTGTATTCAACTAACAGACTAGA............................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGAGAACTAAAAAAGTACACCTAGTT.................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................TTGGCAGACTATCATTGCGTGTTT................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................TTTGTTATGATCGGA...................................................................................................................................................................................................................... 15 0 2 0.50 1 0 0 0 1 0 0 0 0 0
TCTGATAGTCGGGGAACTCAACAAT............................................................................................................................................................................................................................................................................................................. 25 1 7 0.43 3 0 2 1 0 0 0 0 0 0
...................................................................................................................................................................................................CTGCAAGTGAGAACT.................................................................................................................... 15 1 3 0.33 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGTAGATAAGGAAGTCGGCA.............................................................................. 20 3 7 0.29 2 2 0 0 0 0 0 0 0 0
..TGATAGTCGGGGAACTCAACAATAG........................................................................................................................................................................................................................................................................................................... 25 1 7 0.14 1 0 0 1 0 0 0 0 0 0
TCTGATAGTCGGGGAACTCAACAATAGC.......................................................................................................................................................................................................................................................................................................... 28 1 7 0.14 1 0 1 0 0 0 0 0 0 0
..TGATAGTCGGGGAACTCAACAATAGC.......................................................................................................................................................................................................................................................................................................... 26 1 7 0.14 1 0 0 1 0 0 0 0 0 0
............................ACTCTTTCTTGATTTTGTG....................................................................................................................................................................................................................................................................................... 19 2 8 0.13 1 0 0 0 0 0 0 1 0 0
TCTGATAGTCGGGGAACACAA................................................................................................................................................................................................................................................................................................................. 21 1 9 0.11 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................CAAATTCATTGATTCGGGAT....................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 1 0
.............................CTCTTTCTTGATTTTGTG....................................................................................................................................................................................................................................................................................... 18 2 20 0.10 2 0 1 0 0 0 0 1 0 0
..TGATAGTCGGGGAACTC................................................................................................................................................................................................................................................................................................................... 17 0 20 0.10 2 0 0 0 2 0 0 0 0 0
................................................................................................................................................................................................................................AGTTTGTAGATAAGGA...................................................................................... 16 0 11 0.09 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTTGTAGATAAGGAAG.................................................................................... 16 0 13 0.08 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................GGGTGTGGACACAAGGTTG.................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................................AAGGAAGCTGGGATATTTTT....................................................................... 20 2 19 0.05 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

AGACTATCAGCCCCTTGAGTTGGTATCGTGAGAGAGAACAAAAACACAACCATTCAATAAGGAAAACAAACAAGCGATGGAAATCTAACCACCTAATAAACAATACTAGCCTCCGGATATCACGTTTAAGTAACTAAAGCATAAATACCTTCAGTAGAACCGTCTGATAGTAACGCACAAACCTGTGTTGCAACTGACGTTAACTCTTGATTTTTTCATGTGGATCAAACATCTATTCCTTCGACAGTATAAAAAAAAAAACATAAGTTGATTGTCTGATCTCTTTAAAGTAAACGTAAGCTGTGCTCGTTGTGTTGACAGCTTAA
*************************************************************************************************************.....((((.(((((........)))))....(((((((.(((.((...((...((((((((((....))))).)))))...))...))))).)))))))...((((((((.(((..(((.....))))))))))).)))))))........***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR902008
ovaries
.....ATCAGCCCCTTGAGTTGGTATCGT......................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................AAAAAAAAAAACATAAGTTGATTGTCTGAT.............................................. 30 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AAAAAAAAAAATAGGTTGATTGT................................................... 23 2 2 0.50 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................AAAAAAAAAAAATAGGTTGATTGT................................................... 24 2 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................AAAAAAAAAATAGGTTGACTGT................................................... 22 3 13 0.31 4 0 0 0 2 2 0 0
..............TTGAGATGGTAGCGTGAGAA.................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 1 0
.............................GGGGGAGAACAAAAACTCAAC.................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................AAAAAAAAAATAAGTTGAT...................................................... 19 1 5 0.20 1 0 0 0 1 0 0 0
.......................................................................AAGCGATGGAATTCT................................................................................................................................................................................................................................................ 15 1 7 0.14 1 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................AAGAAAAAGCATAAGTTG........................................................ 18 2 20 0.10 2 1 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................AAAAAAACATGAGTTAATT..................................................... 19 2 10 0.10 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................AAAAAAAAAACATAAGTTT........................................................ 19 1 13 0.08 1 0 0 0 0 1 0 0
.........................................................................................................CTAGCATCCTGATATC............................................................................................................................................................................................................. 16 2 19 0.05 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................ACGTTAAGTCTTGATTG................................................................................................................. 17 2 19 0.05 1 0 1 0 0 0 0 0
.......................AATCTTGAGAGACAACAAAAA.......................................................................................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:2261007-2261332 + dsi_1130 TCTGATAGTCGGGG-AACTCAACCATAGCACTCTCTCTTGTTTTTGT-----GTTGGTAAGTTATTCCTTTTGTTTGTTCGCTACCTTTAGATTGGTGG-----ATTATTTGTTATGAT--CGGAGGC------------CTATAGTG--CAAATTCATT-GATTT---------------------------------CGTATTTATGGAAGTCATCTTGGCAGACTATCATTGCGTGTTTGGA----------------------CACAACGTTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGAACTAAAAAAGTACACCTAGTTTGTAGATAAGGAAGCTG--------------------------------------TCATATTTTT------TTTTTTGTATTCAAC-------TAACAGACTAGAGAAATTTCATTTGCATTCGACACGAGCAACACAACTGTC------------G--AAT---------------T
droSec2 scaffold_59:146147-146475 + TCTGATAGTCGGGG-AACTTGACCATAGCACTCTCTCTTGTTTTTTTTTTGTGTTGGTAAGTTATTCCTTTTGTTTGTTCGCTACCTTTAGATTGGTGG-----ATTATTTGTTATGAT--CGGAGGC------------CTACAGTG--CAAATTCATT-GATTT---------------------------------CGTATTTATGGAAGTCATCTTTGCAGACTATCATTGTGTGTTTGGA----------------------CACAACGTTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-G---------------------------------AGAACTAAAAAAGTACATCTAGTTTATAGATAAGGAAGCTG--------------------------------------TCATATTTT-------TTTTTTGTATTCAAC-------TAACAGACTAGAGAAATTTCATTTGCATTCGACACGAGCAACACAACTGTC------------G--AAT---------------T
dm3 chr2R:1241351-1241518 + GAAGTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCAGACTATCTTAGTG------------------------------CTCAACGAAGAGTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC---------------------------------AGAACTTAAAAAGTACATCTAGTTTGTAGATAAGGAAACTG--------------------------------------TCATATT--T------TTTTTTGTATTCAAC-------AAACAGACTAGAGAAATTTCATTTTCATTCGACACGAGCAACACAACTGTC------------G--AAT---------------T
droEre2 scaffold_4784:23533701-23533955 + TCTGATAGACGGGG-AAATCGACTATAGCATTCTCTCTTGTTCTTTATTTTAAT-------TTTTACGAGTTTTTTATTCAATAAAATTGTAAT-GTGA-----TCTATTTAAGAGGGTTGCTGATGCGAAAAGTGGAGT------------AGTTCATA-TATTTTTTTTTTTTACATGAATAGCTTTTTTTTAAAAAC-------------TTTCCTAGGTGGACAATAATTAAATGTTGTGT----------------------GGGAACGTTAACCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTGGGATCCCTTAG---------------------------------------------------------------------------------GATACATTGGTA------------G--TTT---------------G
droYak3 chr2h:727208-727543 - TTAGATAGTCGGGA-AACTCGACTATAGCGTTCTCTCTTGTTTTAATAAA-----GTTAG-------------------------------------------------------------------------------------------------GCTTCTGAG---------------------------------TACCTATGTGGTACTTGGGTTGAAGTTTTTT--TTATGAGCTTTC----------------------TGTAT----T--------------------------GTTTCGAAATCAGCAGTCCCTTA-----------------------------------------------GTGAAAATTACTTGTCTGTTGTAATTATTAGAAAAGCCAGTTTCTGTTATGAATATTAGTTTCTAGTTATCTTTTTGAGTCCGGTGCTGCGTAGCTTCAGCAAA-GAACACTTCCCCTATATTAA------------------------------TTCTG---GATGGATAAAGCATCTA--------------------------------------CTGCATCATT------TTCTTTGCATTTGAC-------GTATTTAATATAGAAATC--GTATGCATTTA-----------------------------------------------------A
droEug1 scf7180000409758:16061-16305 + TCTTATAGTCGCGG-CACTCGACTATAGCGTTTCCTCTTGTTTTTGTTGTTGCT----CTGTTGTTTATGTTCTTACTCAGTTGTTTTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTAGCAGTTGTTATTTGTTGTTAT--------TCAGTTGTTTTTGTAGTTGTTAATCAGTTGTTTTTGTTGTTAATCAGTTGCTTTTTTGTTCAATTGTA-CAACGTCTGCTGAATGTAAA----GTC-------GAAACTTGGACTGTGAATT------------AAGTAACCAG--------------------------------------TCCCGA-----------------------------------------------------------------------------------------------T--TTT---------------T
droBia1 scf7180000301518:336277-336559 + TCTGATAGTCGTGA-CACTCGACTAGAGCGTTTTTTCTATGTTATGTTAGAGTC-G-TCAGATTTTTTTTTAATTTAATTTT---------AAT-TTAATTCGAATTACTTAAA---------AATTCAAAAAATGAAGTCAAAAGCACACAAATTTTTC-GA--T---------------------------------CGTTCCTATGGCAGCTATA-------------------------------------------------------------------------------------------------------------------------TGCTATAGTACTCCGATTTTGATTATAT----------------------------------------------------------------------------------------------------------------------------------TAGATCCGAAATTCAGAACTA-------------------------ATTAAAGTATGATATTTTTAAGCGTATGTTAAGAAACAACAAAGATGTAATATTTTAAATTGTTTT-------------------------------------------------------------------TTT------------C--CAT---------------T
droTak1 scf7180000414008:6202-6491 + CTCACCC-----------------AAGCCAATTAATTTTCTT-----AGAGTCTTGGTATGCAATCCTGTTAGTTTTCGCAATACCTTTCGATAGGTGT-----ATCATTCATTATAAT--CGGACCA------------TCACAGTA--GATTTTCATTTCTTCG---------------------------------TGTATATATAGTAGTCGCCTTCGCACACTCTCCTGGTGCGCTTCG----------------------TCACTACATGGACTGCCGTCCATAGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGCAATAGTAACCTACTCTGGTAGGAAGGTAGC-----------------------------------------CTTACGTTT------TGATCCCAGTTCAAACTACGAAGGGCAAAAAGAAGAAATTTTTT-----------------------------------------T--TGC---------------A
droEle1 scf7180000491238:1288227-1288391 - TCTTCCT----------------------------------------CAAGTCTTGGTATACAATCCCTTATCTTTTAGCGATACCTTTCGGTTGGTGT-----ATTAGTCGTTACGAT--CGGACCA------------TCACAGCA--GATTTTCAATTCTGAG---------------------------------GCTATATATAGTAGTCTCCTATACACCCGCTCTTGGTGCGCATCG----------------------TCACTACATGTACCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000769655:3615-3767 + TCTAATAGTCGAGG-CACTCGACTATAGCGTTCTCTCTTGTTTGTGTTTAAGCT---------CTTC---------GATATCC---------------------------------------------------------------------------------------------------------------------------TTGGTAGCCATT-------------------------------------------------------------------------------------------------------------------------GCCTTTATTTTTAATTTATTTATTTTTT----------------------------------------------------------------------------------------------------------------------------------TGGAATCGAA-----------------------GAGGTTTTTAATATAAA---------------------------------------------------------------------------------------------------------------------------------TATATTTTATTATTTATTTAT---------------G
droFic1 scf7180000453926:281618-281702 - TCTAATAGTCGGGA-AACTCAGCTA-AGCATTCTCTCTTGTTTGTATCTAGACT---TAAAGTAAACTTTTAATTTGATGGCTTCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------A
droKik1 scf7180000302682:1553093-1553161 + TCTCATATTCGGGG-CACTCGACAATGGCGTTCTTTCTTTGTTTTTTTTCAGCT-----TAT-------------TGCTCTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TAT---------------T
droAna3 scaffold_12916:13684912-13685164 - TACC----------------------------------------------------------------------------------TTTCGATTGGTAT-----ATCATTCATTTAGAT--CGGTTGC------------CTACAGAA--AATTTTTAATTCTTCG---------------------------------GCTATATATAG-AGTTTCCT--------------CGCG--------CACGCCTAGGCATGCAGATCGTCACCTCGTGGACTTCCGTCCACAGTGATCTATATAATATAGAATCTTAAAATACAATTATTTAAATTGTATT----------------------------TTTAT----------------------------------------------------ATATTTTTATTTTATTTTTATT---------------------------------------------------TAAAA-------------------------------------------------------------------------------------------------T------TGTTTTGAATTTAAC-------GCAAAAACCAGTTAGATTTCTC---------------------------------------------TT---------------G
droBip1 scf7180000395375:15796-15870 + TAATATAGTCGGAA-AACTCAACTTAGCCGAAATTTCTTGTTCATATGGC------------AATTTTTCTTTTCTGGTCGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TTT---------------T
dp5 Unknown_group_58:12007-12072 + AATT---------------CAACAATATC--------CCGGTT-----TTGTTTTGATAACTTTTTGTTTTTGTTCGACCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGT------------G--AAT---------------T
droPer2 scaffold_6945:1203-1268 - TAATTTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTT------TTCTTTTTAGTCAAT-------TATTAGAGTATTGAACTTGAATTA---------------------------------------A--TAT---------------T
droWil2 scf2_1100000004963:1965773-1965890 + TTTTTTTTTT--------------------------------------TTGTTTTGCTGTTTTGTTTTTTTTTTTTGTTTGCTTTTTCTAAGAT--TAC-----ATCGTAC---------------------------------------AATTTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT-------------------------------------------------------------------------------ATATATATA---ATTAATATATATAGGCGCCATCTTGG
droVir3 scaffold_12958:678518-678614 + ATTCAGTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAC---------------------ATCGTCATTGGCTGCG-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG---------------------------------GTGACGTAAGCTTCACACCGAAGTTTTCGATATCAAAACAG--------------------------------------TCATATA-------------------------------------------------------------------------CCATCTTTT------------G--GAT---------------T
droMoj3 scaffold_6498:2785458-2785539 + TCTCGTAGTCGGGC-TTCTCGACTAGAGCTTTCTTACTTGTTTATTTTTATTTT-----------------TGTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA--ATGTTGAATA-----------------------------CTTTT------------A--AGT---------------T
droGri2 scaffold_15110:23395242-23395359 - TATCGTAGTCGATCTCACTCGACTACAGCATTCTTTCTTGTTTTGAAATTTGTT-----------TCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------GAAAATTGGGCTGTTTGCCGA-------------AAAGTGG--------------------------------------TTATAGA-------------------------------------------------------------------------CTGGCTTATATTTG---AATAATTTGT---------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCTGATAGTCGGGG-AACTCAACCATAGCACTCTCTCTTGTTTTTGT-----GTTGGTAAGTTATTCCTTTTGTTTGTTCGCTACCTTTAGATTGGTGG-----ATTATTTGTTATGAT--CGGAGGC------------CTATAGTG--CAAATTCATT-GATTT---------------------------------CGTATTTATGGAAGTCATCTTGGCAGACTATCATTGCGTGTTTGGA----------------------CACAACGTTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGAACTAAAAAAGTACACCTAGTTTGTAGATAAGGAAGCTG--------------------------------------TCATATTTTT------TTTTTTGTATTCAAC-------TAACAGACTAGAGAAATTTCATTTGCATTCGACACGAGCAACACAACTGTC------------G--AAT---------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................TGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGAACTAAAAAAG.............................................................................................................................................................................................2515.00500000003200000000
..................................................................................................................................................................................................................................................................................TTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGAACTAAAAAAG.............................................................................................................................................................................................2614.00400000010210000000
...................................................................................................................................................................................................................................................................................TGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGAACTAAAAAAGT............................................................................................................................................................................................2613.00300000011010000000
.......................................................................TGTTTGTTCGCTACCTTTAGATTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300000010200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGTATTCAAC-------TAACAGACTAGAGA.......................................................................2812.00200000011000000000
...................................................................................................................................................................................................................................................................................TGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGAACTAAAAAA..............................................................................................................................................................................................2412.00200000000200000000
................................................................................................TGG-----ATTATTTGTTATGAT--CGGAGGC------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000001100000000
.................................................................................................................................................................................................................................................TGGA----------------------CACAACGTTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGA.......................................................................................................................................................................................................2712.00200000011000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGACTAGAGAAATTTCATTTGCA..........................................................2712.00200000000200000000
.................................................................................................................................................................................................................................................TGGA----------------------CACAACGTTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AG........................................................................................................................................................................................................2612.00200000000200000000
.................................................................................................................TATGAT--CGGAGGC------------CTATAGTG--CAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGACTAGAGAAATTTCATTTGC...........................................................2612.00200000010100000000
.............................................................................................TGGTGG-----ATTATTTGTTATGAT--CGGAGGC------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000100000000
................................................................................................................................................................................................................................................TTGGA----------------------CACAACGTTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AG........................................................................................................................................................................................................2711.00100000001000000000
................................................................TTCCTTTTGTTTGTTCGCTACCTTTAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------TAACAGACTAGAGAAATTTCATTTGC...........................................................2711.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGATAAGGAAGCTG--------------------------------------TCATATT....................................................................................................................2511.00100000000100000000
............................................................................................TTGGTGG-----ATTATTTGTTATGAT--CGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
......................................................................................TTTAGATTGGTGG-----ATTATTTGTTATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
......................................................................................................................................................................................................................................................................................CTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGAACTAAAAAA..............................................................................................................................................................................................2111.00100000001000000000
TCTGATAGTCGGGG-AACTCAACCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
...........................................................................................................................................................................................................................................................................CACAACGTTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGAACTAAA.................................................................................................................................................................................................2911.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATTCAAC-------TAACAGACTAGAGA.......................................................................2511.00100000001000000000
....................................................................TTTTGTTTGTTCGCTACCTTTAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
..................................................................................................................................................................................................................................................................................TTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGAACTAAAAAAGTACA.........................................................................................................................................................................................3011.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTTGTAGATAAGGAAGCTG--------------------------------------TCAT.......................................................................................................................2611.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAGATAAGGAAGC...................................................................................................................................................................1811.00100000000001000000
.........................................................................TTTGTTCGCTACCTTTAGATTGGTGG-----A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTTGTAGATAAGGAAGCTG--------------------------------------TCATA......................................................................................................................2711.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTATTCAAC-------TAACAGACTAGAGAA......................................................................2811.00100000001000000000
.....................................................TTGGTAAGTTATTCCTTTTGTTTGTTCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000010000000
...........................................................................................................................................................................................................................................................................CACAACGTTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGAACTAAAA................................................................................................................................................................................................3011.00100000010000000000
................................................................................................................................................................................................................................................TTGGA----------------------CACAACGTTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGAA......................................................................................................................................................................................................2911.00100000001000000000
...................................................................................................................................................................TTT---------------------------------CGTATTTATGGAAGTCATCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTTGTAGATAAGGAAGCTG--------------------------------------TCATATT....................................................................................................................2911.00100000000100000000
................................................................................................................................................................................................................................................TTGGA----------------------CACAACGTTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGA.......................................................................................................................................................................................................2811.00100000001000000000
..................................................................................................................................................................................................................................................................................TTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGAACTAAAAAA..............................................................................................................................................................................................2511.00100000000100000000
.........................................................................................................................................................................................................................................TGCGTGTTTGGA----------------------CACAACGTTGACTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...................................................................................................................................................................................................................................................................................TGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------AGAACTAAAAAAGTA...........................................................................................................................................................................................2711.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACCTAGTTTGTAGA............................................................................................................................................................................1711.00100000000001000000
............................................................................................TTGGTGG-----ATTATTTGTTATGAT--CGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAC-------TAACAGACTAGAGAAATTTCATT..............................................................2911.00100000010000000000
.............................................................................................................................................................................................................................................TGTTTGGA----------------------CACAACGTTGACTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
......................................................TGGTAAGTTATTCCTTTTGTTTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.............................................................................................................................................................................................................................................TGTTTGGA----------------------CACAACGTTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.............................................................................................................................................................................................................................................2611.00100000000000010000
............................................TGT-----GTTGGTAAGTTATTCCTTTTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTATTCAAC-------TAACAGACTAGA.........................................................................2711.00100000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------------------------------AGAACTAAAAAAGTACACCTAGTT..................................................................................................................................................................................2611.00100000000001000000
..........................................................................................................................................................................................................................TTGGCAGACTATCATTGCGTGTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
............................................................................................................TTTGTTATGAT--CGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
..TGATAGTCGGGG-AACTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.10200000000002000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTGTAGATAAGGA......................................................................................................................................................................16110.09100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAGATAAGGAAG....................................................................................................................................................................16130.08100000000001000000
droSec2
TCTGATAGTCGGGG-AACTTGACCATAGCACTCTCTCTTGTTTTTTTTTTGTGTTGGTAAGTTATTCCTTTTGTTTGTTCGCTACCTTTAGATTGGTGG-----ATTATTTGTTATGAT--CGGAGGC------------CTACAGTG--CAAATTCATT-GATTT---------------------------------CGTATTTATGGAAGTCATCTTTGCAGACTATCATTGTGTGTTTGGA----------------------CACAACGTTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-G---------------------------------AGAACTAAAAAAGTACATCTAGTTTATAGATAAGGAAGCTG--------------------------------------TCATATTTT-------TTTTTTGTATTCAAC-------TAACAGACTAGAGAAATTTCATTTGCATTCGACACGAGCAACACAACTGTC------------G--AAT---------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................CAACGTTGACTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-G---------------------------------AGAAC.....................................................................................................................................................................................................2212.0020020
dm3
GAAGTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCAGACTATCTTAGTG------------------------------CTCAACGAAGAGTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC---------------------------------AGAACTTAAAAAGTACATCTAGTTTGTAGATAAGGAAACTG--------------------------------------TCATATT--T------TTTTTTGTATTCAAC-------AAACAGACTAGAGAAATTTCATTTTCATTCGACACGAGCAACACAACTGTC------------G--AAT---------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................CGAAGAGTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC---------------------------------AGAACTTA..................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTTCATTCGACACGAGCAACACAAC......................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGAGCAACACAACTG....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCATTCGACACGAGCAACACAACT.....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................AGAGTGCA-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC---------------------------------AGAACTTAAAAAG.............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTAGTTTGTAGATAAGGAAACTG--------------------------------------T..........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTTTCATTCGACACGAGCAACA..........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGACTAGAGAAATTTCATTTT............................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCAAC-------AAACAGACTAGAG........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGATAAGGAAACTG--------------------------------------TCATATT--T------T..........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAC-------AAACAGACTAGAGAA......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAGTACATCTAGTTT.................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-------AAACAGACTAGAGAAATTTCATT..............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGGAAACTG--------------------------------------TCATATT--T------TTTTTT.....................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTAAAAAGTACATCTAGTTTT................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATTTTCATTCGACACGAGCAACACA........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACGAGCAACACAACTGTC------------G--A..................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCGACACGAGCAACA..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTTTCATTCGACACGA................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCAAC-------AAACAGACTAGAGAAAT....................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTTGTAGATAAGGAA.....................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCTGATAGACGGGG-AAATCGACTATAGCATTCTCTCTTGTTCTTTATTTTAAT-------TTTTACGAGTTTTTTATTCAATAAAATTGTAAT-GTGA-----TCTATTTAAGAGGGTTGCTGATGCGAAAAGTGGAGT------------AGTTCATA-TATTTTTTTTTTTTACATGAATAGCTTTTTTTTAAAAAC-------------TTTCCTAGGTGGACAATAATTAAATGTTGTGT----------------------GGGAACGTTAACCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTGGGATCCCTTAG---------------------------------------------------------------------------------GATACATTGGTA------------G--TTT---------------GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TTAGATAGTCGGGA-AACTCGACTATAGCGTTCTCTCTTGTTTTAATAAA-----GTTAG-------------------------------------------------------------------------------------------------GCTTCTGAG---------------------------------TACCTATGTGGTACTTGGGTTGAAGTTTTTT--TTATGAGCTTTC----------------------TGTAT----T--------------------------GTTTCGAAATCAGCAGTCCCTTA-----------------------------------------------GTGAAAATTACTTGTCTGTTGTAATTATTAGAAAAGCCAGTTTCTGTTATGAATATTAGTTTCTAGTTATCTTTTTGAGTCCGGTGCTGCGTAGCTTCAGCAAA-GAACACTTCCCCTATATTAA------------------------------TTCTG---GATGGATAAAGCATCTA--------------------------------------CTGCATCATT------TTCTTTGCATTTGAC-------GTATTTAATATAGAAATC--GTATGCATTTA-----------------------------------------------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCATTTGAC-------GTATTTAATATAGAAA.....................................................................2811.00100000000001
..................TCGACTATAGCGTTCTCTCTTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.7014014000000000
....................GACTATAGCGTTCTCTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.30606000000000
.......................TATAGCGTTCTCTCTTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100100000000
droEug1
TCTTATAGTCGCGG-CACTCGACTATAGCGTTTCCTCTTGTTTTTGTTGTTGCT----CTGTTGTTTATGTTCTTACTCAGTTGTTTTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTAGCAGTTGTTATTTGTTGTTAT--------TCAGTTGTTTTTGTAGTTGTTAATCAGTTGTTTTTGTTGTTAATCAGTTGCTTTTTTGTTCAATTGTA-CAACGTCTGCTGAATGTAAA----GTC-------GAAACTTGGACTGTGAATT------------AAGTAACCAG--------------------------------------TCCCGA-----------------------------------------------------------------------------------------------T--TTT---------------TSizeHit CountTotal NormTotal
No Reads
droBia1
TCTGATAGTCGTGA-CACTCGACTAGAGCGTTTTTTCTATGTTATGTTAGAGTC-G-TCAGATTTTTTTTTAATTTAATTTT---------AAT-TTAATTCGAATTACTTAAA---------AATTCAAAAAATGAAGTCAAAAGCACACAAATTTTTC-GA--T---------------------------------CGTTCCTATGGCAGCTATA-------------------------------------------------------------------------------------------------------------------------TGCTATAGTACTCCGATTTTGATTATAT----------------------------------------------------------------------------------------------------------------------------------TAGATCCGAAATTCAGAACTA-------------------------ATTAAAGTATGATATTTTTAAGCGTATGTTAAGAAACAACAAAGATGTAATATTTTAAATTGTTTT-------------------------------------------------------------------TTT------------C--CAT---------------TSizeHit CountTotal NormTotal
No Reads
droTak1
CTCACCC-----------------AAGCCAATTAATTTTCTT-----AGAGTCTTGGTATGCAATCCTGTTAGTTTTCGCAATACCTTTCGATAGGTGT-----ATCATTCATTATAAT--CGGACCA------------TCACAGTA--GATTTTCATTTCTTCG---------------------------------TGTATATATAGTAGTCGCCTTCGCACACTCTCCTGGTGCGCTTCG----------------------TCACTACATGGACTGCCGTCCATAGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGCAATAGTAACCTACTCTGGTAGGAAGGTAGC-----------------------------------------CTTACGTTT------TGATCCCAGTTCAAACTACGAAGGGCAAAAAGAAGAAATTTTTT-----------------------------------------T--TGC---------------ASizeHit CountTotal NormTotal
No Reads
droEle1
TCTTCCT----------------------------------------CAAGTCTTGGTATACAATCCCTTATCTTTTAGCGATACCTTTCGGTTGGTGT-----ATTAGTCGTTACGAT--CGGACCA------------TCACAGCA--GATTTTCAATTCTGAG---------------------------------GCTATATATAGTAGTCTCCTATACACCCGCTCTTGGTGCGCATCG----------------------TCACTACATGTACCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TCTAATAGTCGAGG-CACTCGACTATAGCGTTCTCTCTTGTTTGTGTTTAAGCT---------CTTC---------GATATCC---------------------------------------------------------------------------------------------------------------------------TTGGTAGCCATT-------------------------------------------------------------------------------------------------------------------------GCCTTTATTTTTAATTTATTTATTTTTT----------------------------------------------------------------------------------------------------------------------------------TGGAATCGAA-----------------------GAGGTTTTTAATATAAA---------------------------------------------------------------------------------------------------------------------------------TATATTTTATTATTTATTTAT---------------GSizeHit CountTotal NormTotal
No Reads
droFic1
TCTAATAGTCGGGA-AACTCAGCTA-AGCATTCTCTCTTGTTTGTATCTAGACT---TAAAGTAAACTTTTAATTTGATGGCTTCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------ASizeHit CountTotal NormTotal
No Reads
droKik1
TCTCATATTCGGGG-CACTCGACAATGGCGTTCTTTCTTTGTTTTTTTTCAGCT-----TAT-------------TGCTCTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TAT---------------TSizeHit CountTotal NormTotal
No Reads
droAna3
TACC----------------------------------------------------------------------------------TTTCGATTGGTAT-----ATCATTCATTTAGAT--CGGTTGC------------CTACAGAA--AATTTTTAATTCTTCG---------------------------------GCTATATATAG-AGTTTCCT--------------CGCG--------CACGCCTAGGCATGCAGATCGTCACCTCGTGGACTTCCGTCCACAGTGATCTATATAATATAGAATCTTAAAATACAATTATTTAAATTGTATT----------------------------TTTAT----------------------------------------------------ATATTTTTATTTTATTTTTATT---------------------------------------------------TAAAA-------------------------------------------------------------------------------------------------T------TGTTTTGAATTTAAC-------GCAAAAACCAGTTAGATTTCTC---------------------------------------------TT---------------GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................TGCAGATCGTCACCTCGTGGACTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2560.332002000
.......................................................................................................................................................................................................................TCCT--------------CGCG--------CACGCCTAGGCATGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.306600000
...............................................................................................................................................................................................................TAG-AGTTTCCT--------------CGCG--------CACGCCTAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.255500000
.............................................................................................................................................................................................................................................................GGCATGCAGATCGTCACCTCGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2490.222000002
.......................................................................................................................................................................................................................................................CGCCTAGGCATGCAGATCGTCACCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.171100000
.......................................................................................................................................................................................................................................................CGCCTAGGCATGCAGATCGTCACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.171001000
.........................................................................................................TCATTCATTTAGAT--CGGTTGC------------CTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102200000
...................................................................................................................................................................................................................................................................CAGATCGTCACCTCGTGGACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.101100000
..................................................................................................T-----ATCATTCATTTAGAT--CGGTTGC------------CTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102101000
.................................................................................................AT-----ATCATTCATTTAGAT--CGGTTGC------------CTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000001
.......................................................................................................................................................................................................................TCCT--------------CGCG--------CACGCCTAGGCATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
...........................................................................................................................................................................................................TATATAG-AGTTTCCT--------------CGCG--------CACGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.....................................................................................................................................................................G---------------------------------GCTATATATAG-AGTTTCCT--------------CGCG--------CACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
.................................................................................................................TTAGAT--CGGTTGC------------CTACAGAA--AAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
droBip1
TAATATAGTCGGAA-AACTCAACTTAGCCGAAATTTCTTGTTCATATGGC------------AATTTTTCTTTTCTGGTCGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TTT---------------TSizeHit CountTotal NormTotal
No Reads
dp5
AATT---------------CAACAATATC--------CCGGTT-----TTGTTTTGATAACTTTTTGTTTTTGTTCGACCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGT------------G--AAT---------------TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TAATTTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTT------TTCTTTTTAGTCAAT-------TATTAGAGTATTGAACTTGAATTA---------------------------------------A--TAT---------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTTTTTTTTT--------------------------------------TTGTTTTGCTGTTTTGTTTTTTTTTTTTGTTTGCTTTTTCTAAGAT--TAC-----ATCGTAC---------------------------------------AATTTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT-------------------------------------------------------------------------------ATATATATA---ATTAATATATATAGGCGCCATCTTGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ATTCAGTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAC---------------------ATCGTCATTGGCTGCG-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG---------------------------------GTGACGTAAGCTTCACACCGAAGTTTTCGATATCAAAACAG--------------------------------------TCATATA-------------------------------------------------------------------------CCATCTTTT------------G--GAT---------------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACCGAAGTTTTCGATATCAAAA....................................................................................................................................................................27110.091000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACCGAAGTTTTCGATATCAAA.....................................................................................................................................................................26110.091000000000000000000000000001000000000000000000000000000000000000
droMoj3
TCTCGTAGTCGGGC-TTCTCGACTAGAGCTTTCTTACTTGTTTATTTTTATTTT-----------------TGTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA--ATGTTGAATA-----------------------------CTTTT------------A--AGT---------------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................TCTCGACTAGAGCTTTCTTACTTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.60121200000
droGri2
TATCGTAGTCGATCTCACTCGACTACAGCATTCTTTCTTGTTTTGAAATTTGTT-----------TCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------GAAAATTGGGCTGTTTGCCGA-------------AAAGTGG--------------------------------------TTATAGA-------------------------------------------------------------------------CTGGCTTATATTTG---AATAATTTGT---------------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:57 PM