ID:

dsi_11288

 Coordinate:

2r:5377214-5377363 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.9 -9.9 -9.8 -9.8

Flybase annnotation

CDS [2r_5377364_5377802_+]; exon [2r_5377364_5377802_+]; intron [2r_5375576_5377363_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGACTCTTTTGGTGTTGGTCAAAGAAACATGATCTCCTGAGTTATGGCCCTCACCTCAACAAACCCTCGAAAACTCACATGTCCGTTATCTCTCTGTCGATTCTACTTTGTGGTCCCTCCCCTAATCTGGCGTTTCTTTTTTAAATCGCAACCTCTAACACGACGTTAAACTAATCGCCACGAATTCGCTCATTTTCCAGGCAAAGATCGTGCGGAACGATGACAATGAGCTGACCTACCGGACCACGGA
****************************************************************************************.((....................((............(((((((.............(((............)))............))))).)).............))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M053
female body
 M023
head
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.......................................................................................................................................................................................................GGCAAAGATCGTGCGGAACGAT............................. 22 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ACGATGACAATGAGCTGAC............... 19 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AACGATGACAATGAGCTGACCTACC.......... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GAGCTGACCTACCGGACC..... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ATGAGCTGACCTACCGGACCACG.. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTGGCAAAGATCGTGCGGAACGAT............................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AACGATGACAATGAGCTGACCTACCG......... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................TGCAGAACGATGACAATGAGCTGACC.............. 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................AAGGCAAAGATCGTGCGGAAC................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCGTGCGGAACGATGACAATGAGCTGA................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTGCGGAACGATGACAATGAGCT.................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GTGAAGGCAAAGATCGTGCGGAAC................................ 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGCAAAGATCGTGCGGAACGA.............................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGCGGAACGATGACAATGAGCTGAC............... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................GCAAAGATCGTGCGGAACGATGG........................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................GATGACAATGAGCTGACCTACCGGACC..... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGCAAAGATCGTGCGGAAC................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCGTGCGGAACGATGACAATGAGC................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................GAACGATGACAATGAGCT.................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAAGATCGTGCGGAACGATGACAATG...................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GATGACAATGAGCTGACCTACC.......... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGCAAAGATCGTGCGGAACGAC............................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TCTCTCTGTCGATTCTACTTTGTGGT........................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GCTGACCTACCGGACCAC... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGGCAAAGATCGTGCGGAACGAT............................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AATGAGCTGACCTACCGGACCACGG. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................ACGAATTCGCTCATTTTCCAG.................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................CTATGACACGACATTAAACT.............................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0
..............TCGGTCAAAGAAACA............................................................................................................................................................................................................................. 15 1 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0
......................................................................AAACTCACCTATCCGTT................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................GGGAAAGTTCGTGCGG................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TCTGAGAAAACCACAACCAGTTTCTTTGTACTAGAGGACTCAATACCGGGAGTGGAGTTGTTTGGGAGCTTTTGAGTGTACAGGCAATAGAGAGACAGCTAAGATGAAACACCAGGGAGGGGATTAGACCGCAAAGAAAAAATTTAGCGTTGGAGATTGTGCTGCAATTTGATTAGCGGTGCTTAAGCGAGTAAAAGGTCCGTTTCTAGCACGCCTTGCTACTGTTACTCGACTGGATGGCCTGGTGCCT
**************************************************.((....................((............(((((((.............(((............)))............))))).)).............))))**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
............................................................TTTGGGAGATTTTGGGTGTA.......................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................GTCCGTTTCTAGCACGCCTTG................................ 21 0 1 1.00 1 0 1 0 0 0 0
........................................................GATGTTTGGGAGCTTT.................................................................................................................................................................................. 16 1 4 0.25 1 1 0 0 0 0 0
............................................................TTTGGGAGATTTTGGGTGTACT........................................................................................................................................................................ 22 3 4 0.25 1 0 0 0 1 0 0
........................................................................................................................................AATAAATTTAGCGATGGAGGT............................................................................................. 21 3 6 0.17 1 0 0 0 0 1 0
......................................................................................................................................AGAAAAAATGTAGCG..................................................................................................... 15 1 20 0.15 3 0 0 3 0 0 0
...................................................................................GCTATAGAGAGAGAGCTA..................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................TGGACTTGATGGCCTGG..... 17 2 8 0.13 1 0 0 1 0 0 0
....................................................................................................................................................................................................................................TCAACTCGATGGCCTGG..... 17 2 8 0.13 1 0 0 1 0 0 0
..............................................................................................................................................................................................GTAGAAGGTCCGTTTC............................................ 16 1 9 0.11 1 1 0 0 0 0 0
.........................................................................................................................................AAAAATTTTGCGATTGAGATT............................................................................................ 21 3 10 0.10 1 0 0 0 0 0 1
.....................................................................................................................................................................................................................................CGACTCGATGCCCTGG..... 16 2 18 0.06 1 0 0 1 0 0 0
....................................................................................................................................................................................GCTCAAGCCAGTAGAAGG.................................................... 18 3 20 0.05 1 0 0 1 0 0 0

Generated: 04/23/2015 at 01:35 PM