ID:

dsi_11267

 Coordinate:

2r:17127528-17127792 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.6 -11.6 -11.2

Flybase annnotation

CDS [2r_17127351_17127500_-]; five_prime_UTR [2r_17127501_17127527_-]; exon [2r_17127793_17127947_-]; five_prime_UTR [2r_17127793_17127947_-]; exon [2r_17127351_17127527_-]; intron [2r_17127528_17127792_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAAAGCGAAAGAGCCCATCGAAACCAACACGAAAAATGTGTTCAGTAGAGGTGAGCCCAAAAGAAAAGTGCTGAAGTGTGGTGAAAGTGAACATACATACATACATATACAAACGTTTGTCTAAAAGATGGCGCCTCTGGAAAGAAACCGTTAATAGTAGCTTAGGGTTTAATAGACTCTTGAAAATACATAGCCCGTCACTTCATATCGAAAATCTAGTGAAAGCGGTTCGCGTTTTGCTAAGGAAATCGGTTCCTTAAAATAACAAAAAAAAATTCCAGAAAGTCAGCTAATTTGGTTTTCCGAATTTTCTAGATTCCGTTCCCCAGATCATATAAGAAAATGGTTGCTGATGACATTGATGC
**************************************************************************************************************************************************************************....................................(((((...(((((((((((((...))).)))))))).))...)))))**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 O001
Testis
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M025
embryo
 SRR618934
dsim w501 ovaries
 M023
head
................................................................................................................................................................................................................................................................................................................................................AAGAAAATGGTTGCTGATGAC........ 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AATAGACTCTTGAAAATACATAGCCCGT....................................................................................................................................................................... 28 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0
...................................................................................................................................................................................................................................................................................................................................................AAAATGGTTGCTGATGAC........ 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TCGCGTTTTGCTAAGGAAATCGGT................................................................................................................ 24 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AAAAAAAATTCCAGAAAGTCAGCT.......................................................................... 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................TATAAGAAAATGGTTGCTGATGACA....... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................AAAATGTGTTCAGTAGAGGTG........................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................................AAATGGTTGCTGATGA......... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................TCGGTTCCTTAAAATAACAAAAAAA............................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................AAATGGTTGCTGATGAC........ 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................AATCGGTTCCTTAAAA....................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................AAAAAAATTCCAGAAAGTCAGCT.......................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TTGCTAAGGAAATCGG................................................................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................CCCAGATCATATAAG.......................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CGTTAATAGTAGCTTAGGGTT.................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................CGCCTCTGGAAAGAAACCGT...................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AAAAATTCCAGAAAGTCAGC........................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................CATACATACATATACAAAC........................................................................................................................................................................................................................................................... 19 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0
.AAAGCGAAAGAGCCCATCGA........................................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTTCGCGTTTTGCAAAGGAAATCGGTT............................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................ATAGACTCTTGAAAATACATA............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................................................................................AAGAAAATGGTTGCCGATAACATC..... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................AAAAAAAAATTCCAGAAAGTCAGC........................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................GTAGAGATTCCGTTCCCCAGATC................................. 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................TAAGAAAATGGTTGCTGATGACATT..... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................AAGAAAATGGTTGCTGA............ 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................ATAAGAAAATGGTTGCTGAT........... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATCGAAAATCTAGTGA............................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TAACAAAAAAAAATTCCAGAAAGTCAGC........................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................AAATTCCAGAAAGTCAGCT.......................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCATATAAGAAAATGGTTGCTGATGACA....... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AAAAAAAATTCCAGAAAGTC.............................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCATATAAGAAAATGGTTGCTGATGA......... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................GAAAATGGTTGCTGATGAC........ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................CTAGATTCCGTTCCCCAG.................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................TAAGAAAATGGTTGCTGATGACATTGA... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................GAAAATGGTTGCTGA............ 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TCCAGAAAGTCAGCT.......................................................................... 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................AGTGTGGTGAATGTGA................................................................................................................................................................................................................................................................................... 16 1 6 0.33 2 0 0 0 0 0 0 0 0 0 2 0
...............................................................................................................................................................................................................................................CTAAGGAAATAGGTTC.............................................................................................................. 16 1 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................TAGGGAAAGCGGTTC...................................................................................................................................... 15 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................GTGCTGAAGCGTGATTAAAG...................................................................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................................................TTTTGCTAAGGAAATA................................................................................................................... 16 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................TATAAGATAATGGTT................. 15 1 18 0.06 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................AAGAGATAAGTGCTGA................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................GACTAACAGATGGAGCCT..................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................GAAGCGTGGTAAAAGT..................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................................................AAATAACAAAAAAAAA.......................................................................................... 16 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................ACCGTTACTAATAGCT........................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.......................................GTACAGGATAGGTGAGCC.................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTTTCGCTTTCTCGGGTAGCTTTGGTTGTGCTTTTTACACAAGTCATCTCCACTCGGGTTTTCTTTTCACGACTTCACACCACTTTCACTTGTATGTATGTATGTATATGTTTGCAAACAGATTTTCTACCGCGGAGACCTTTCTTTGGCAATTATCATCGAATCCCAAATTATCTGAGAACTTTTATGTATCGGGCAGTGAAGTATAGCTTTTAGATCACTTTCGCCAAGCGCAAAACGATTCCTTTAGCCAAGGAATTTTATTGTTTTTTTTTAAGGTCTTTCAGTCGATTAAACCAAAAGGCTTAAAAGATCTAAGGCAAGGGGTCTAGTATATTCTTTTACCAACGACTACTGTAACTACG
****************************************************************************************************************....................................(((((...(((((((((((((...))).)))))))).))...)))))************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
..........................................................................................................................................CCTTTCTTTGGCAATTATCATC............................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................ATTTTTCGGGCAGTGAAGTA............................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................TATCTGAGAACTTTTATGTAT............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.......TTTCTCGGGTAGCTTTGGTTG................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
........................................................................................................................................................................................AAATGTATCGGGCAGTGAAGTA............................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................AAGTATAGCTTTTAGATC.................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TTTTTTTTAAGGTCTTTCAGTC............................................................................ 22 0 1 1.00 1 0 0 1 0 0 0
..........CTCGGGTAGCTTTGGTTGTGC.............................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0
..........................................................................................................................TTTTCTACCGCGGAGACCTTT.............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................CGGGCAGTGGAGTATAGCTTT........................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................................AGTGAAGTATAGCTTTTAGAT................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................................................................CTCTAAGGCAAGGGGTCTAG................................. 20 1 2 0.50 1 0 0 0 0 1 0
...................................................................................................................................................................................................................................................................................................................AAAAGATCTTAGGCCAGGGT...................................... 20 3 20 0.25 5 0 0 2 0 0 3
........................................................................................................................................................CTATCATCGAATCTCAA.................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................CAAGGAATTTTAGTTGTTTTTT............................................................................................ 22 3 16 0.06 1 0 0 1 0 0 0
............................................................................................................................................................................................................................................................AAGGATTTTGATTGTTTTTT............................................................................................. 20 2 19 0.05 1 0 0 0 0 0 1
................................TTTTAAACAAGTCAT.............................................................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:17127478-17127842 - dsi_11267 AAAAGCGAAAGAGCCCATCGAAACCAA-CA--CGAAAAATGTGTTC--AGT-AGAGGTGAGCCCAAAAGAAAA-GTG-------------CTGA----------------------------------------------------AGTGTGGTGAAA--G---------------------------------------------------------------------------------------------------------------------------------------------TGAACATACATACA-----------------TACATATAC---AAACGTTTGT----------------------------------CTAAAAGATGGCGCC--------------TCTGGAAAGAAACCGTTAATA---------------GTAGCT---TAGGGTTTAATAG-ACTCTTGAAA--ATACAT-------A--------------GCCCGTCACTTCATATCGAAAAT----------------CTAGTGAAAGCGGTTCGCGTTTTGCTAA------------------------------------G-GAA-AT-------------CGGTTCCTTA--AA--ATAACAA-----AA-------AAAAA-TT--------CC---A-------GAAAG------------------------TCAGCTAATT-----TGG-----------TTTTCCG-------AATTT-T--------------------------------------------CTAGATTCCGTTCCCCAGATCA--TATAA-G--AAAATGGTTGCTGATGACATTGATGC
droSec2 scaffold_1:14111728-14112092 - AAAAGCGAAAGAGCCCATCGAAACCAA-CA--CGAAATATGTGTTC--AAT-AGAGGTGAGCCCAAAAGAAAA-GTG-------------CTGA----------------------------------------------------AGTGTGGTGAAA--G---------------------------------------------------------------------------------------------------------------------------------------------TGAACATACATACA-----------------TACATATAC---AAACGTCTGT----------------------------------CTAAAAGATGGCGCC--------------TCTGGAAAAAATCCGTTAGTA---------------GTAGCT---TAGGGTTTAATAG-ACTCTTGAAA--ATACAT-------A--------------GCCCGTCACTTCATATCGAAAAT----------------CTAGTGAAAGCGGTTCGCGTTTTGCTAA------------------------------------G-GAA-AT-------------CGGTTCCTTA--AA--ATAACAA-----AA-------AAAAA-TT--------CC---A-------GAAAG------------------------TCAGCTAATT-----TGG-----------TTTTCCG-------AATTT-T--------------------------------------------CTAGATTCCTTTCCCCAGATCA--TATAA-G--AAAATGGTTGCTGATGACATTGATGC
dm3 chr2R:16557833-16558192 - AAAAGCGAAAGAGCCCATCGAAACCAA-CA--CGAAAAAGGAGTTC--AAT-AAAGGTGAGCCCAAAAGAAAA-GTG-------------CTAA----------------------------------------------------AGTGTGGTGAAA--G---------------------------------------------------------------------------------------------------------------------------------------------TGAACATACATACA-----------------TACACATAA---AAACATCTGT----------------------------------GTAAAAGATGGCGCC--------------ACTGGAAGAAAACCGTTAGTTG---------------TAGCT---TTGGGTTTAATAG-ACTCTTGAAA--ATTCGT-------A--------------GCCCGTCACTTCATATCGAAAAT----------------CTAGTGAAAGCGGTTCGCGTTTTGCAAA------------------------------------G-GAA-AT-------------CGGTTCCTTA--AA--AAA----------A-------AAAAA-TT--------CT---A-------GTGAC------------------------TCAGCTAATT-----TCG-----------TTATCCG-------AATTT-T--------------------------------------------CTAGATTGCTTTTCGCAGATCA--TATAA-G--AAAATGGTTGCCGATAACATCGATGC
droEre2 scaffold_4845:10705847-10706212 - AAAAGCGAAAGAGCCCATCGAAACCAG-CA--CGAAGAAGGAGTTC--AAT-AAAGGTGAGTGCAAAAGAAAA-GTG-------------CCAA----------------------------------------------------AGTGTGGTGGAA--AGA----------------ATATATAT------------------------------------------------------------------------------------------------------------------------ATATGTATG-----------------CACACATAC---ACATGTGTGT----------------------------------GCTAAAGATGGCGCT--------------TCTGGAAGAAGACCGTTAGTTC------TT---CCAGAAGCTC----GGGTTTAATAG-ACTCCCGAAA--ATGCAT-------T--------------GCCCTTCACTTCGTAGCGAAAAT----------------CTAGTGAAAGCGGTTCGCGATTTGCAAA------------------------------------G-GAA-AT-------------CAATTCCTTG--AA--------------------------AA-TT-----TCTTA---A-------GTGAG------------------------TCAGCTAATT-----TTA-----------ATTTTCG-------ATTTT-T--------------------------------------------CAAGATTGCTTTCCGCAGATCA--TATAA-G--AAAATGGTTGCCGATAATATCGATGC
droYak3 2R:12637557-12637925 + AAAAGCGAAAGAGCCCATCGAAACCAA-CA--CGAAGAAGGAGTTC--AAT-AAAGGTGAGTGCAAAAGTAAA-GTG-------------CCAA----------------------------------------------------AGTGTGGTGAAA--G---------------------------------------------------------------------------------------------------------------------------------------------TATCCATACATACAAAATATATATGTGAATATACATACACAACACACATGTGT----------------------------------GCAAAAGATGGCGCT--------------ACTGGAAGAAGACCGTTAGTTC------TT---CCTGAAGCTC----GGGTTTAATAG-ACTCTCGAAA--ATTTAT-------T--------------GCCCGTCACTTCGTTGCGAAAAT----------------CTAGTGAAAGCGGTTCGCGATTTGCAAA------------------------------------T-GAA-AT-------------CAGTTCCTTG--A------------------------------------------------------TTAG------------------------TCAGCTAATT-----TCT-----------TTTTTCG-------ATTTT-T--------------------------------------------CAAGATTGCTTTCCGCAGATCA--TATAA-G--AAAATGGTTGCCGATAATATCGATGC
droEug1 scf7180000409474:1401428-1401798 + AAAAGCGAAAGAGCCCATCGAAATCAA-CA--CGAAAAAGGAGTTC--AAT-AAAGGTGAGTGGAAAGGGAAA-GTG-------------CTAAA-----A----------------GT------------------------GAT--TGTGGTGAAA--AAGT-------------------------------------------------------------------------------------------------------------------------------------GTCTG--------------------------------------------------------AAGTAAAAAGAGTG---A--T-GTAAA-------GAAAATGGCGCT--------------CCTGGAAGAGAACTGTTAATTC-C----TT---CTAGAACCTC-----AGTTTAATAA-ACCC--GAAA--ACTTGC-------T--------------GCCTGTCACTTCGTAGACAAAAT----------------CTAAGAAAAGCGGCTCGCGTTTCACAAG------------------------------------TTTAA-AT-------------TATTTCTTTG--AA--ATAAAAC-----AT-------AAAAA-AT--------TA---A-------GTGAGT------------C----------TCTTCTAATG-----TAA-----------TACTTGG------TATCTT-T--------------------------------------------CTATATTTTATTCTCCAGATCA--TATAATA--AAAATGGTTGCCGATAATATCGATGC
droBia1 scf7180000301754:983472-983838 + AAAAGCGAAAGAGCCCATCGAAACCAA-CA--CGAA-ACGGAGTTC--AAT-AAAGGTGAGTGCAAAAGAAAAGGTG-------------CTAAA-----A----------------GT------------------------GAA--TGTGGTGAAA--ACGC-------------------------------------------------------------------------------------------------------------------------------------GCGTG--------------------------------------------------------TGGTGTAAAGTGGG-----CT-CCAAA-------GAAAATGGCGCT--------------TCTGGAAGGGAACCGTTCCTTC-------T---CCGTAATCTC-----GGTTTAATAG-ACCCCCGAAA--TTTCGG-------A--------------GCCCGTCACTTCGTAGACAAATT----------------CTTCTAAAAGCGGTTCGCGTTTTACTAA------------------------------------G-GAA-C--------------GATTTCCTT-TACC--A------AAAAT---------ATTAA-TT--------TC---A-------GTGAG------------------------TTAGTTACCC-----CTT--TTTTT----CCTTTTG-------A-TTT-T--------------------------------------------CTAGATTGCTTCCCCCAGATCA--GATTC-A--AAAATGGTTGCCGATAATATCGATGC
droTak1 scf7180000414560:248620-248977 + AAAAGCGAAAGAGCCCATCGAAATTAA-CA--CGAA-AAGGAGTTCCCAAT-AAAGGTAAGACAAAGAA-AAA-ATG-------------AAAAA---------------------------------------------------AGTGTGGTGAAA--ATGT-------------------------------------------------------------------------------------------------------------------------------------GAGAG--------------------------------------------------------TGA-----------------TAGAAAA-------AAAAATGGCGAT--------------TCTGGAAGGAACCCGTTGCCTT-------G---CCAAAATCTC-----GGTTTAA-AG-ACCCTCGAAT--GTTCGG-------G--------------GCCCGTCACTTCGTAGACAAAAT----------------CTATTAAAAGCGGTTCGCGTTTCACTAA------------------------------------G-GAA-AA--------------GTTTCCTT-TACA--A------AAAAGTT--G----AAAAA-TT-----ATTGA---A-------GTGAGT-----TT----------------TCGGCTAATGAAAATTTG-------------TTGCG-------ATTTT-T--------------------------------------------CTAGAACG-TTTCCCCAGATCA--TATTC-A--AAAATGGTTGCCGATAATATCGATGC
droEle1 scf7180000491240:525893-526247 + AAAAGCGAAAGAGCCCGTCGAAATCAA-CA--CAAAAAAGGAGTTC--AAT-AAAGGTGAGTCCAAAAGGAAA-GTG-------------ACAAA-----A----------------GT------------------------GAT--TATGGTGAAT--AAA-------------------------------------------------------------------------------------------------------------------------------ATACTGTGAGAGTGG------------------------------------------------------------------GCAG-----CAAAA-------CAAAATGGCGCT--------------CCTGGAAGGAATCTGTTAGTTA------TT---CTAGAATCGC-----GGTTAAGTTCACCACTTAAAA--GTTCGG-------G--------------GCCCGACACTTTGTAGAAAAAAC----------------CTT-----CACGGTTCACGTTTAACAAA------------------------------------G--------------------TTTCTTTTTA--GC--A------C-A--------------AA-GT-----ATATA---A-------GTGAGT-----------------------TCTGCTAATT-----GTA-----T-----ACTTACATATGTATA-TTTTTTT-T------T---------------------------------CTGGATTGCTTCCCCTAGATC------------AAAATGGTTGCCAATAATATCGATGC
droRho1 scf7180000780104:181629-181972 - AAAAGCGAAAGAGC-CGTCGAAATCAA-CA--CGAAAAAGGAGTTC--AAT-AAAGGTGAGAACATAAAGAAA-GTT-------------GCAA------A----------------GT------------------------GGC--TGTGGTGAATTAA---------------------------------------------------------------------------------------------------------------------------------------------TGAGCTGGC------------------------------------AAGTGTG----------------TGGTG-----CAAAA------CAAATATGGCGCT--------------GCTGGAAGGAAGCTGTTAGTTT-------T---CCAATATTGC-----GTTTTAAGCTACCTCTTGTGT--CTTCGG-------C--------------GCAAGTCACTTCGTATA-AAACC----------------CCAACAAAAGAGGTTCGCGTTTTACAAG------------------------TTCCTTTTTACAC-A-----CAAAAAT-----------------------------------T--------AAAA-TT-----ATTTA---A-------GTGAG----------------------------CTAATT-----TTG-----------T-----------------------------------------------------------------ACGTGTATTTCTCCCAGATCA--TATAG-A--AAAATGGTTGCCGATAACGTCGATAC
droFic1 scf7180000454039:1866906-1867242 - AAAAGCGAAAGAGCCCATCGAAATTAA-CA--CGAAAAAGGAGTTC--AAT-AAAGGTTAGTGCAATAAGGAA-GTG-------------CTGAA-----A----------------GT------------------------GA-AGTGTGGTGAAA--AA---------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------T-----------------------C-TAAAA-------GAAAATGGCGTT--------------CCTGGAAGGAATCCGTTAGTTT-------C---CTGGAATATC-----AGCTTAATTCAATGCTT----------GA-------A--------------GCCAGTCACTTCGTGGACAAAAT----------------CGAAAACAAGCGGATCGCGTTTGAGAAG------------------------------------C-GAA-AA-------------TTTTTCTTTA--AA--A------A-A-------------AAG-TT-----ATTGG---A-------GTGAG----------------------------CTGATA---TTTTGTTGTAC-----TTCTACA-------ATATT-T--------------------------------------------CTAGATTGCTTCGCTCAAATCA--C---T-A--AAAATGGTTGCCGAAAATATCGATGC
droKik1 scf7180000302471:1032698-1033084 - AAAAGCGAAAGAGCCCATCGAAATTAA-CA--CGAA-AAGGAGTTC--AAT-AAAAGTGAGTGAAAAAAAAGA-GTG-------------AAATAAAATCA----------------GT------------------------GAT--TGTGGTGAGT--ATGTTC------------------------------------------------------------CGTGTGTGTG----------------------------------------------------------------TG--------------------------------------------------------TGG-AAGTGGAGCA---GGGC-CGAAA-------GAACATGGCGCT--------------CCTGGAAAGGAACCGCTGCTTT-------C---CCTGGTCCCCATTTGGGTTCAACCG-ACTCCCAGAA--GT-CAG-------T--------------GGCCGGCAGTTCGTAGACAAGTC--------------------TCAAAGCGAATCGCGGTCTTCGAG------------------------------------G-GAC-AA-------------TTTTACCC--TTCTA-A------AAAAA--TCTA-------A-CG--------TC---A--------AACG------------------------TCAA-TAATT-----TTT-TTTCTTCCTTCACCTTA-------A-TTT-T--------------------------------------------TTTCATCGGTTTCACCAGTTCA--TATAG-GATAAAATGGGTGCCGACAACATCGATGC
droAna3 scaffold_13266:4024282-4024691 + AAAAGCGAAGGAGCCCATCGAGATCAA-CA--CGAA-AAGGAGTTCA-AAT-AAAGGTAAGTGGAATAGAAAA--TA-------------AA--------------------------TAATTGTGGAAT-------------GAT--TGTG---CAA--AA-----------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAATTGTA--------------TAAGT---GAGAGTGTGTTTG------------TGCGG-----CCAAGTACTTTGGAAGATGGCGCT--------------TCTGGAAGGAATCAGTTAGCTT-------C--CATAGGTACT---TGGCGTTCAATCC-CCTCTAACAATTGTTC-G-------G--------------GTTAGTCACTTCGTCATCGAAAC----------------TCAGTCCAAGCGGTTCGCGTTCGTTCAA------------------------------------G-GAA-AA-------------GTTTTCCGG-TAGA--AGAATAA-----AA--TATTTTCAAACTT-----TTGAC---A-------GTGCCC-----CGTCCGCCCATCCAG--C----CTAAAT------------------------CG-------AATTT-TTTTT----------------------------------------TCAGATTGCTTCCCTCAGATCT--TATAC-C--AAAATGGTTGCCGATAACATCGATGC
droBip1 scf7180000396427:2488184-2488569 + AAAAGCGAAAGAGC-CATCGAAATTAA-CA--CGAA-AAGGAGTTCA-AAT-AAAGGTAAGTACAAAAGAAAA--TA-------------ATAG------A---------------------------------------------ATGATGGTGCAA--AA---------------------------------------------------------------------------------------------------------------------------------------------AATCAAGTGTATG-----------------GAAAAAAGT---GAAAGTGTGT---------------TAGTG-----CATTG-------GAAAATGGCGCA--------------TGTGGAAGAATACAGTTAGCTT-------C--CATCGGTTCC---TGGCGTTCAATCC-CCTCTAACAATTCTT-CG-------G--------------GTTAGTCACTTCGTCTTCGAAAC----------------TCTGCGCAAGCGGTTCGCGTTCGTTCTA------------------------------------A-CAAAC--------------ATTTTCTGG-TAGA--AAA----------G-------AAAAA-TT--------TTCACA-------ACGAAATTCCCCGTTCG----TCAAG--C----CTAAAT------------------------AA-------AATTT-TTT-T----------------------------------------TCAGATTGCTTCCCTCAGATCT--CATAG-C--AAAATGGTTGCCGATTCCATCGACGC
dp5 3:8590724-8591134 + AAACGCGAAAGAACCGGTCGAAAAAAA-AACGCGGA-GAGAAATTCTAAATAAAAGGTAGGCTGAAAAG------TGCTTGAAAATAGTGATAA----------------------------------------------------AGTGCG----------------------------------------------------------------------------------------------------------------------------------------------------CG--------------------------------------------------------AGA-AGACAGAGAA---A--A-GAAAA-------AAAGATGGCGCTTGAAGTGAACCTAGACTGGAAATAAACCGTAGCTTT-GTACATATTTCCAC-TCCGC-----GGTGTAG----AGCAGTGCA---------GCCA----GTTTTTTGCAATCCGTCAGACATTCCACAGCCAAAAC----------------GCTGCTCAAGCGGTTCGCGATTCTA-----------------------TT---TTTTTTTTTGAG-A-----AAAAAATTTTCTT----------TGTTC-G------AAAAT--TTTAGT------TTTGTGTTAAAAC---A-----------G--------TAGGCCTACTCGG----TTGCTAATT-----TTA-----T-----TTTTTCG-------AATTT-C--------------------------------------------CTGG-----TGTTCTCAGATAT--TTTTT-C--AAAATGGTTGCCGAAATTTCTAAAGA
droPer2 scaffold_4:2475215-2475628 + AAACGCGAAAGAACCGGTCGAAAAAAAAAACGCGTA-GAGAAATTCAAAATAAAAGGTAGGCTGAAAAG------TGCTTGAAAATAGTGATAA----------------------------------------------------AGTGCG----------------------------------------------------------------------------------------------------------------------------------------------------CG--------------------------------------------------------AGA-AGGCAGAGAA--------AAGAA-------AAAGATGGCGCTTGAAGTGAACCTAGACTGGAAATAAACCGTAGCTTT-GTACATATTTCCAC-TCTGC-----GGTGTAG----AGCAGCGCA---------GGCA----GTTTTTTGCAATCCGTCAGACATTCCACAGCCAAAAC----------------GCTGCTCAAGCGGTTCGCGATTTTA-----------------------TTTTTTTTTTTTTTGAG-A-----AAAAAATTTTCTT----------TGTTTAG------AAAAT--TTTAGT------TTTGTGTTAAAAC---A-----------G--------TAGGCCTACTCGG----TTGCTAATT-----TTA-----T-----TTTTTTG-------AATTT-C--------------------------------------------CTGG-----TGTTCTCAGATAT--TTTTT-C--AAAATGGTTGCCGAAATTTCTAAAGA
droWil2 scf2_1100000004513:4551142-4551251 - AACAGCGAAAGAGCCCATCGAGTTAAA-CG--CGAGACGAGAGCAA--AA---AAGAGGATTTCAAATTAAAA-GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTGATAAGAAGCAAAGAAGATAAAGTGCAATAAAAGTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12823:2210726-2211116 + AAAAGCGAAAAAGCCCATCGAATTAAG-CC--CGAA-CGTAAGTGG--AA--GAAGGTAAGGCGATAAA-TAA-TTT-------------CTATT-----ATTGTGTGTCTGTGTGTGT-----------GTGTCTATGCGCG--------GGTGCAA--A-----------------------------------------------------------------------------------------A------------GAAATTAAAAGAAG-----------------------------------------------------------------------------------------------------A-AAAAA-------AAACATGGCGTA-CTCGAAAAACTGTCCTGGAAATATGCCGTTGCCAGAAAGTTTG---CCTCTTTTGT-----GGTTTATTCG-TCCC---------------------AG---TCCGCAATTCG------------TTAGCGTTCT----------------TCGTTCTGTGCGCGTCGCAACTTCTGCGTTAGCAAAGAT--TT-------------------------A-TT-------------AGATTTCTTC--TA--AT-------------------AAAAA-GT--------AT---AGTGCGTAGTTTCT-----TTT-----------GTAT----TTA------------------------ATTTG-------ATTTT-T--------------------------------------------TTTTGTTCTTGCGCGCAGATCA--TATAC-C--AAAATGGTTGCCGTTAGCATTGATTC
droMoj3 scaffold_6496:1559535-1559960 + AAAAGCGAAAAAACCCATCGAATTAAG-CC--CGAA-CGTTAGTGG----G-AAAGGTAAGCGAATG--AT----TT-------------TTTTT-----TTTCTTT---------------------------------------------------------TTTTTTTTAATTTAAATTCATGTATGTATATACATACATACGTAAAGAGCAAACTATAGAAGTATGTGTGTGTGCGAGAATGAGAATTGAATTGAAAGGCAATAAATAC------------------------AAAAT----------------------------------------------------------------TGA--GA----GG-CGAAA-------AAAAATGGCGAA--GCGTAAAACAGTCCTGGAAATATGCCGTTGTTTT-------C---TTG----CT------TGTTTGACAG-TTCTGCACA---------AAGTTCA-G---TTCGCAATTCG------------TCTTCAAT-C------TGTGTGCATCGTTACT------GTTGCCGC-------T--GGCAAAAGTAAAT---------------------TTTAA-AT-------------TTTT--------------------------------------------------T---C-------TTGAG----------------------------GTATTT-----TAA--------------TTGG------TA-TTT-TT-------------------------------------------TT---CTCTTTTTGGCAGTTCA--TATAC-C--AAAATGGTTGCCATTAGCATTGATTC
droGri2 scaffold_14925:1510-1921 - AAAAGCGAAAAATACCATCGAATCGAAAAT--CGAACGGAAAGTGT--AAA-AAAGGTGAGAGAAAATGAC---TTG----CATGT-----------------GTTCATTCGTGTGAGT-----------GTATGTGTGCGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------TGC-AAAAGAAATT---TC-G-TTAAA-------AAAAATGGCGTT-GAGCGAAAACTGTCCTGGAATTATTCCGTTAGCTTAG------------------------TGCTTAA-----CCC--ATAA--A-TTGT-------T--------------GACCGCCAT-TCGCAGTTCAGTTGCAATAT---------TCGTTCCTTGCGGGTCACAATTTCTTCT--GGAA--GAT--ATTCTTAATTTTTTTTTTTTACTG---------------------------------------------------------------GT--------AT---AAATCGAAGTGAGC-----TTT-----------GTGT----TCG------------------------TTTTA-------G-TTT-TTATTATAAATTCTGATTTAATTATATTATAAATAATAAATATATTATAATATATTTTCTTAGGTCCAAAATAG-C--AAAATGGTTGCCAATAA---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAAAGCGAAAGAGCCCATCGAAACCAA-CA--CGAAAAATGTGTTC--AGT-AGAGGTGAGCCCAAAAGAAAA-GTG-------------CTGA----------------------------------------------------AGTGTGGTGAAA--G---------------------------------------------------------------------------------------------------------------------------------------------TGAACATACATACA-----------------TACATATAC---AAACGTTTGT----------------------------------CTAAAAGATGGCGCC--------------TCTGGAAAGAAACCGTTAATA---------------GTAGCT---TAGGGTTTAATAG-ACTCTTGAAA--ATACAT-------A--------------GCCCGTCACTTCATATCGAAAAT----------------CTAGTGAAAGCGGTTCGCGTTTTGCTAA------------------------------------G-GAA-AT-------------CGGTTCCTTA--AA--ATAACAA-----AA-------AAAAA-TT--------CC---A-------GAAAG------------------------TCAGCTAATT-----TGG-----------TTTTCCG-------AATTT-T--------------------------------------------CTAGATTCCGTTCCCCAGATCA--TATAA-G--AAAATGGTTGCTGATGACATTGATGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-G--AAAATGGTTGCTGATGAC........2112.00202000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAG-ACTCTTGAAA--ATACAT-------A--------------GCCCGT..............................................................................................................................................................................................................................................................................................................................................................................2812.00200200000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGTTGCTGATGAC........1812.00202000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGTTTTGCTAA------------------------------------G-GAA-AT-------------CGGT....................................................................................................................................................................................................................................................2412.00200000000000020000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AA-------AAAAA-TT--------CC---A-------GAAAG------------------------TCAGCT...................................................................................................................................................2412.00200000011000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAA-G--AAAATGGTTGCTGATGACA.......2511.00100000000000010000
...................................AAAATGTGTTC--AGT-AGAGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGCTGATGA.........1611.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------CGGTTCCTTA--AA--ATAACAA-----AA-------AAA................................................................................................................................................................................................................2511.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGCTGATGAC........1711.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AT-------------CGGTTCCTTA--AA--A.......................................................................................................................................................................................................................................1611.00100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAAAA-TT--------CC---A-------GAAAG------------------------TCAGCT...................................................................................................................................................2311.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTAA------------------------------------G-GAA-AT-------------CGG.....................................................................................................................................................................................................................................................1611.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGATCA--TATAA-G--..........................1511.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTAATA---------------GTAGCT---TAGGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CGCC--------------TCTGGAAAGAAACCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA-TT--------CC---A-------GAAAG------------------------TCAGC....................................................................................................................................................2011.00100000010000000000
......................................................................................................................................................................................................................................................................................................................CATACA-----------------TACATATAC---AAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.00200002000000000000
.AAAGCGAAAGAGCCCATCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAG-ACTCTTGAAA--ATACAT-------A--------------....................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----AA-------AAAAA-TT--------CC---A-------GAAAG------------------------TCAGC....................................................................................................................................................2411.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-G--AAAATGGTTGCTGATGACATT.....2511.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-G--AAAATGGTTGCTGA............1711.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAA-G--AAAATGGTTGCTGAT...........2011.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAAT----------------CTAGTGA......................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAA-----AA-------AAAAA-TT--------CC---A-------GAAAG------------------------TCAGC....................................................................................................................................................2811.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-TT--------CC---A-------GAAAG------------------------TCAGCT...................................................................................................................................................1911.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA--TATAA-G--AAAATGGTTGCTGATGACA.......2811.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AA-------AAAAA-TT--------CC---A-------GAAAG------------------------TC.......................................................................................................................................................2011.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA--TATAA-G--AAAATGGTTGCTGATGA.........2611.00100000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--AAAATGGTTGCTGATGAC........1911.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGATTCCGTTCCCCAG.........................................1811.00100001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-G--AAAATGGTTGCTGATGACATTGA...2711.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--AAAATGGTTGCTGA............1520.50100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------CC---A-------GAAAG------------------------TCAGCT...................................................................................................................................................1520.50100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCTAA------------------------------------G-GAA-AT-------------A.......................................................................................................................................................................................................................................................16160.06100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--ATAACAA-----AA-------AAAAA-.............................................................................................................................................................................................................16200.05100000000000001000
droSec2
AAAAGCGAAAGAGCCCATCGAAACCAA-CA--CGAAATATGTGTTC--AAT-AGAGGTGAGCCCAAAAGAAAA-GTG-------------CTGA----------------------------------------------------AGTGTGGTGAAA--G---------------------------------------------------------------------------------------------------------------------------------------------TGAACATACATACA-----------------TACATATAC---AAACGTCTGT----------------------------------CTAAAAGATGGCGCC--------------TCTGGAAAAAATCCGTTAGTA---------------GTAGCT---TAGGGTTTAATAG-ACTCTTGAAA--ATACAT-------A--------------GCCCGTCACTTCATATCGAAAAT----------------CTAGTGAAAGCGGTTCGCGTTTTGCTAA------------------------------------G-GAA-AT-------------CGGTTCCTTA--AA--ATAACAA-----AA-------AAAAA-TT--------CC---A-------GAAAG------------------------TCAGCTAATT-----TGG-----------TTTTCCG-------AATTT-T--------------------------------------------CTAGATTCCTTTCCCCAGATCA--TATAA-G--AAAATGGTTGCTGATGACATTGATGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
AAAAGCGAAAGAGCCCATCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAAAT----------------CTAGTGAAAGCGGT...............................................................................................................................................................................................................................................................................................................................2211.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTAGTA---------------GTAGCT---TAGGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
........................................................GTGAGCCCAAAAGAAAA-GTG-------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
AAAAGCGAAAGAGCCCATCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
dm3
AAAAGCGAAAGAGCCCATCGAAACCAA-CA--CGAAAAAGGAGTTC--AAT-AAAGGTGAGCCCAAAAGAAAA-GTG-------------CTAA----------------------------------------------------AGTGTGGTGAAA--G---------------------------------------------------------------------------------------------------------------------------------------------TGAACATACATACA-----------------TACACATAA---AAACATCTGT----------------------------------GTAAAAGATGGCGCC--------------ACTGGAAGAAAACCGTTAGTTG---------------TAGCT---TTGGGTTTAATAG-ACTCTTGAAA--ATTCGT-------A--------------GCCCGTCACTTCATATCGAAAAT----------------CTAGTGAAAGCGGTTCGCGTTTTGCAAA------------------------------------G-GAA-AT-------------CGGTTCCTTA--AA--AAA----------A-------AAAAA-TT--------CT---A-------GTGAC------------------------TCAGCTAATT-----TCG-----------TTATCCG-------AATTT-T--------------------------------------------CTAGATTGCTTTTCGCAGATCA--TATAA-G--AAAATGGTTGCCGATAACATCGATGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAAGCGGTTCGCGTTTTGC....................................................................................................................................................................................................................................................................................................................231100.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283023018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-G--AAAATGGTTGCCGATAACATC.....25124.002400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAGAGCCCATCGAAACCAA-CA--CGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGAAAGCGGTTCGCGTTTTGC....................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGCGGTTCGCGTTTTGC....................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAAGCGGTTCGCGTT........................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGCGTTTTGCAAA------------------------------------G-GAA-AT-------------CGG.....................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----TCG-----------TTATCCG-------AATTT-T--------------------------------------------CTAGATT....................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCA--TATAA-G--AAAATGGTTGCCGA............2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAA-G--AAAATGGTTGCCGATAAC........2313.0030000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-G--AAAATGGTTGCCGATAAC........2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCAAA------------------------------------G-GAA-AT-------------CGGTTCCT................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAAGCGGTTCGCGTTTT......................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGCCCATCGAAACCAA-CA--CGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGAAAGCGGTTCGCGT.........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA----------A-------AAAAA-TT--------CT---A-------GTGAC------------------------TCAGCT...................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTTTTGCAAA------------------------------------G-GAA-AT-------------CGGTTCCT................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCGTTTTGCAAA------------------------------------G-GAA-AT-------------C.......................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........AAGAGCCCATCGAAACCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATCGAAAAT----------------CTAGTGAAAG...................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCCGATAACATCGATG.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGAAAGCGGTTCGCG..........................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGGTTCGCGTTTTGCAA..................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTTGCAAA------------------------------------G-GAA-AT-------------CGGTTCCT................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCGTTAGTTG---------------TAGCT---TTGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------CT---A-------GTGAC------------------------TCAGCTAATT-----TCG-----------TTATCC......................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCA--TATAA-G--AAAATGGTTGCCGT............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-TT--------CT---A-------GTGAC------------------------TCAGCT...................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCT---TTGGGTTTAATAG-ACTCTTGA....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAA-G--AAAATGGTTGCCGATAAC........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------------TAGCT---TTGGGTTTAATAG-............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATATCGAAAAT----------------CTAGTG.......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAAGCGGTTCGCGTTTTGCAAA------------------------------------G-...........................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGAAAGCGGTTCGCGTTTTGCAAA------------------------------------G-...........................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droEre2
AAAAGCGAAAGAGCCCATCGAAACCAG-CA--CGAAGAAGGAGTTC--AAT-AAAGGTGAGTGCAAAAGAAAA-GTG-------------CCAA----------------------------------------------------AGTGTGGTGGAA--AGA----------------ATATATAT------------------------------------------------------------------------------------------------------------------------ATATGTATG-----------------CACACATAC---ACATGTGTGT----------------------------------GCTAAAGATGGCGCT--------------TCTGGAAGAAGACCGTTAGTTC------TT---CCAGAAGCTC----GGGTTTAATAG-ACTCCCGAAA--ATGCAT-------T--------------GCCCTTCACTTCGTAGCGAAAAT----------------CTAGTGAAAGCGGTTCGCGATTTGCAAA------------------------------------G-GAA-AT-------------CAATTCCTTG--AA--------------------------AA-TT-----TCTTA---A-------GTGAG------------------------TCAGCTAATT-----TTA-----------ATTTTCG-------ATTTT-T--------------------------------------------CAAGATTGCTTTCCGCAGATCA--TATAA-G--AAAATGGTTGCCGATAATATCGATGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAT----------------CTAGTGAAAGCGGTTCGCGA.........................................................................................................................................................................................................................................................................................................................26115.001500000015
..........GAGCCCATCGAAACCAG-CA--CGAAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000200
................ATCGAAACCAG-CA--CGAAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
droYak3
AAAAGCGAAAGAGCCCATCGAAACCAA-CA--CGAAGAAGGAGTTC--AAT-AAAGGTGAGTGCAAAAGTAAA-GTG-------------CCAA----------------------------------------------------AGTGTGGTGAAA--G---------------------------------------------------------------------------------------------------------------------------------------------TATCCATACATACAAAATATATATGTGAATATACATACACAACACACATGTGT----------------------------------GCAAAAGATGGCGCT--------------ACTGGAAGAAGACCGTTAGTTC------TT---CCTGAAGCTC----GGGTTTAATAG-ACTCTCGAAA--ATTTAT-------T--------------GCCCGTCACTTCGTTGCGAAAAT----------------CTAGTGAAAGCGGTTCGCGATTTGCAAA------------------------------------T-GAA-AT-------------CAGTTCCTTG--A------------------------------------------------------TTAG------------------------TCAGCTAATT-----TCT-----------TTTTTCG-------ATTTT-T--------------------------------------------CAAGATTGCTTTCCGCAGATCA--TATAA-G--AAAATGGTTGCCGATAATATCGATGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
AAAAGCGAAAGAGCCCATCGAAATCAA-CA--CGAAAAAGGAGTTC--AAT-AAAGGTGAGTGGAAAGGGAAA-GTG-------------CTAAA-----A----------------GT------------------------GAT--TGTGGTGAAA--AAGT-------------------------------------------------------------------------------------------------------------------------------------GTCTG--------------------------------------------------------AAGTAAAAAGAGTG---A--T-GTAAA-------GAAAATGGCGCT--------------CCTGGAAGAGAACTGTTAATTC-C----TT---CTAGAACCTC-----AGTTTAATAA-ACCC--GAAA--ACTTGC-------T--------------GCCTGTCACTTCGTAGACAAAAT----------------CTAAGAAAAGCGGCTCGCGTTTCACAAG------------------------------------TTTAA-AT-------------TATTTCTTTG--AA--ATAAAAC-----AT-------AAAAA-AT--------TA---A-------GTGAGT------------C----------TCTTCTAATG-----TAA-----------TACTTGG------TATCTT-T--------------------------------------------CTATATTTTATTCTCCAGATCA--TATAATA--AAAATGGTTGCCGATAATATCGATGCSizeHit CountTotal NormTotal
No Reads
droBia1
AAAAGCGAAAGAGCCCATCGAAACCAA-CA--CGAA-ACGGAGTTC--AAT-AAAGGTGAGTGCAAAAGAAAAGGTG-------------CTAAA-----A----------------GT------------------------GAA--TGTGGTGAAA--ACGC-------------------------------------------------------------------------------------------------------------------------------------GCGTG--------------------------------------------------------TGGTGTAAAGTGGG-----CT-CCAAA-------GAAAATGGCGCT--------------TCTGGAAGGGAACCGTTCCTTC-------T---CCGTAATCTC-----GGTTTAATAG-ACCCCCGAAA--TTTCGG-------A--------------GCCCGTCACTTCGTAGACAAATT----------------CTTCTAAAAGCGGTTCGCGTTTTACTAA------------------------------------G-GAA-C--------------GATTTCCTT-TACC--A------AAAAT---------ATTAA-TT--------TC---A-------GTGAG------------------------TTAGTTACCC-----CTT--TTTTT----CCTTTTG-------A-TTT-T--------------------------------------------CTAGATTGCTTCCCCCAGATCA--GATTC-A--AAAATGGTTGCCGATAATATCGATGCSizeHit CountTotal NormTotal
No Reads
droTak1
AAAAGCGAAAGAGCCCATCGAAATTAA-CA--CGAA-AAGGAGTTCCCAAT-AAAGGTAAGACAAAGAA-AAA-ATG-------------AAAAA---------------------------------------------------AGTGTGGTGAAA--ATGT-------------------------------------------------------------------------------------------------------------------------------------GAGAG--------------------------------------------------------TGA-----------------TAGAAAA-------AAAAATGGCGAT--------------TCTGGAAGGAACCCGTTGCCTT-------G---CCAAAATCTC-----GGTTTAA-AG-ACCCTCGAAT--GTTCGG-------G--------------GCCCGTCACTTCGTAGACAAAAT----------------CTATTAAAAGCGGTTCGCGTTTCACTAA------------------------------------G-GAA-AA--------------GTTTCCTT-TACA--A------AAAAGTT--G----AAAAA-TT-----ATTGA---A-------GTGAGT-----TT----------------TCGGCTAATGAAAATTTG-------------TTGCG-------ATTTT-T--------------------------------------------CTAGAACG-TTTCCCCAGATCA--TATTC-A--AAAATGGTTGCCGATAATATCGATGCSizeHit CountTotal NormTotal
No Reads
droEle1
AAAAGCGAAAGAGCCCGTCGAAATCAA-CA--CAAAAAAGGAGTTC--AAT-AAAGGTGAGTCCAAAAGGAAA-GTG-------------ACAAA-----A----------------GT------------------------GAT--TATGGTGAAT--AAA-------------------------------------------------------------------------------------------------------------------------------ATACTGTGAGAGTGG------------------------------------------------------------------GCAG-----CAAAA-------CAAAATGGCGCT--------------CCTGGAAGGAATCTGTTAGTTA------TT---CTAGAATCGC-----GGTTAAGTTCACCACTTAAAA--GTTCGG-------G--------------GCCCGACACTTTGTAGAAAAAAC----------------CTT-----CACGGTTCACGTTTAACAAA------------------------------------G--------------------TTTCTTTTTA--GC--A------C-A--------------AA-GT-----ATATA---A-------GTGAGT-----------------------TCTGCTAATT-----GTA-----T-----ACTTACATATGTATA-TTTTTTT-T------T---------------------------------CTGGATTGCTTCCCCTAGATC------------AAAATGGTTGCCAATAATATCGATGCSizeHit CountTotal NormTotal
No Reads
droRho1
AAAAGCGAAAGAGC-CGTCGAAATCAA-CA--CGAAAAAGGAGTTC--AAT-AAAGGTGAGAACATAAAGAAA-GTT-------------GCAA------A----------------GT------------------------GGC--TGTGGTGAATTAA---------------------------------------------------------------------------------------------------------------------------------------------TGAGCTGGC------------------------------------AAGTGTG----------------TGGTG-----CAAAA------CAAATATGGCGCT--------------GCTGGAAGGAAGCTGTTAGTTT-------T---CCAATATTGC-----GTTTTAAGCTACCTCTTGTGT--CTTCGG-------C--------------GCAAGTCACTTCGTATA-AAACC----------------CCAACAAAAGAGGTTCGCGTTTTACAAG------------------------TTCCTTTTTACAC-A-----CAAAAAT-----------------------------------T--------AAAA-TT-----ATTTA---A-------GTGAG----------------------------CTAATT-----TTG-----------T-----------------------------------------------------------------ACGTGTATTTCTCCCAGATCA--TATAG-A--AAAATGGTTGCCGATAACGTCGATACSizeHit CountTotal NormTotal
No Reads
droFic1
AAAAGCGAAAGAGCCCATCGAAATTAA-CA--CGAAAAAGGAGTTC--AAT-AAAGGTTAGTGCAATAAGGAA-GTG-------------CTGAA-----A----------------GT------------------------GA-AGTGTGGTGAAA--AA---------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------T-----------------------C-TAAAA-------GAAAATGGCGTT--------------CCTGGAAGGAATCCGTTAGTTT-------C---CTGGAATATC-----AGCTTAATTCAATGCTT----------GA-------A--------------GCCAGTCACTTCGTGGACAAAAT----------------CGAAAACAAGCGGATCGCGTTTGAGAAG------------------------------------C-GAA-AA-------------TTTTTCTTTA--AA--A------A-A-------------AAG-TT-----ATTGG---A-------GTGAG----------------------------CTGATA---TTTTGTTGTAC-----TTCTACA-------ATATT-T--------------------------------------------CTAGATTGCTTCGCTCAAATCA--C---T-A--AAAATGGTTGCCGAAAATATCGATGCSizeHit CountTotal NormTotal
No Reads
droKik1
AAAAGCGAAAGAGCCCATCGAAATTAA-CA--CGAA-AAGGAGTTC--AAT-AAAAGTGAGTGAAAAAAAAGA-GTG-------------AAATAAAATCA----------------GT------------------------GAT--TGTGGTGAGT--ATGTTC------------------------------------------------------------CGTGTGTGTG----------------------------------------------------------------TG--------------------------------------------------------TGG-AAGTGGAGCA---GGGC-CGAAA-------GAACATGGCGCT--------------CCTGGAAAGGAACCGCTGCTTT-------C---CCTGGTCCCCATTTGGGTTCAACCG-ACTCCCAGAA--GT-CAG-------T--------------GGCCGGCAGTTCGTAGACAAGTC--------------------TCAAAGCGAATCGCGGTCTTCGAG------------------------------------G-GAC-AA-------------TTTTACCC--TTCTA-A------AAAAA--TCTA-------A-CG--------TC---A--------AACG------------------------TCAA-TAATT-----TTT-TTTCTTCCTTCACCTTA-------A-TTT-T--------------------------------------------TTTCATCGGTTTCACCAGTTCA--TATAG-GATAAAATGGGTGCCGACAACATCGATGCSizeHit CountTotal NormTotal
No Reads
droAna3
AAAAGCGAAGGAGCCCATCGAGATCAA-CA--CGAA-AAGGAGTTCA-AAT-AAAGGTAAGTGGAATAGAAAA--TA-------------AA--------------------------TAATTGTGGAAT-------------GAT--TGTG---CAA--AA-----------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAATTGTA--------------TAAGT---GAGAGTGTGTTTG------------TGCGG-----CCAAGTACTTTGGAAGATGGCGCT--------------TCTGGAAGGAATCAGTTAGCTT-------C--CATAGGTACT---TGGCGTTCAATCC-CCTCTAACAATTGTTC-G-------G--------------GTTAGTCACTTCGTCATCGAAAC----------------TCAGTCCAAGCGGTTCGCGTTCGTTCAA------------------------------------G-GAA-AA-------------GTTTTCCGG-TAGA--AGAATAA-----AA--TATTTTCAAACTT-----TTGAC---A-------GTGCCC-----CGTCCGCCCATCCAG--C----CTAAAT------------------------CG-------AATTT-TTTTT----------------------------------------TCAGATTGCTTCCCTCAGATCT--TATAC-C--AAAATGGTTGCCGATAACATCGATGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCCAAGCGGTTCGCG..........................................................................................................................................................................................................................................................................................................................1811.001100000
droBip1
AAAAGCGAAAGAGC-CATCGAAATTAA-CA--CGAA-AAGGAGTTCA-AAT-AAAGGTAAGTACAAAAGAAAA--TA-------------ATAG------A---------------------------------------------ATGATGGTGCAA--AA---------------------------------------------------------------------------------------------------------------------------------------------AATCAAGTGTATG-----------------GAAAAAAGT---GAAAGTGTGT---------------TAGTG-----CATTG-------GAAAATGGCGCA--------------TGTGGAAGAATACAGTTAGCTT-------C--CATCGGTTCC---TGGCGTTCAATCC-CCTCTAACAATTCTT-CG-------G--------------GTTAGTCACTTCGTCTTCGAAAC----------------TCTGCGCAAGCGGTTCGCGTTCGTTCTA------------------------------------A-CAAAC--------------ATTTTCTGG-TAGA--AAA----------G-------AAAAA-TT--------TTCACA-------ACGAAATTCCCCGTTCG----TCAAG--C----CTAAAT------------------------AA-------AATTT-TTT-T----------------------------------------TCAGATTGCTTCCCTCAGATCT--CATAG-C--AAAATGGTTGCCGATTCCATCGACGCSizeHit CountTotal NormTotal
No Reads
dp5
AAACGCGAAAGAACCGGTCGAAAAAAA-AACGCGGA-GAGAAATTCTAAATAAAAGGTAGGCTGAAAAG------TGCTTGAAAATAGTGATAA----------------------------------------------------AGTGCG----------------------------------------------------------------------------------------------------------------------------------------------------CG--------------------------------------------------------AGA-AGACAGAGAA---A--A-GAAAA-------AAAGATGGCGCTTGAAGTGAACCTAGACTGGAAATAAACCGTAGCTTT-GTACATATTTCCAC-TCCGC-----GGTGTAG----AGCAGTGCA---------GCCA----GTTTTTTGCAATCCGTCAGACATTCCACAGCCAAAAC----------------GCTGCTCAAGCGGTTCGCGATTCTA-----------------------TT---TTTTTTTTTGAG-A-----AAAAAATTTTCTT----------TGTTC-G------AAAAT--TTTAGT------TTTGTGTTAAAAC---A-----------G--------TAGGCCTACTCGG----TTGCTAATT-----TTA-----T-----TTTTTCG-------AATTT-C--------------------------------------------CTGG-----TGTTCTCAGATAT--TTTTT-C--AAAATGGTTGCCGAAATTTCTAAAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---A-----------G--------TAGGCCTACTCGG----TTGCTA..................................................................................................................................................2211.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCAAGCGGTTCGCG..........................................................................................................................................................................................................................................................................................................................1911.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTTAAAAC---A-----------G--------TAGGCCTACT...............................................................................................................................................................2411.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------AATTT-C--------------------------------------------CTGG-----TGTTCTCAG.........................................2011.0010100000000
..................CGAAAAAAA-AACGCGGA-GAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCG-------AATTT-C--------------------------------------------CTGG-----TGTT..............................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACAGCCAAAAC----------------GCTGCTCAAGCGGT...............................................................................................................................................................................................................................................................................................................................2811.0010000100000
droPer2
AAACGCGAAAGAACCGGTCGAAAAAAAAAACGCGTA-GAGAAATTCAAAATAAAAGGTAGGCTGAAAAG------TGCTTGAAAATAGTGATAA----------------------------------------------------AGTGCG----------------------------------------------------------------------------------------------------------------------------------------------------CG--------------------------------------------------------AGA-AGGCAGAGAA--------AAGAA-------AAAGATGGCGCTTGAAGTGAACCTAGACTGGAAATAAACCGTAGCTTT-GTACATATTTCCAC-TCTGC-----GGTGTAG----AGCAGCGCA---------GGCA----GTTTTTTGCAATCCGTCAGACATTCCACAGCCAAAAC----------------GCTGCTCAAGCGGTTCGCGATTTTA-----------------------TTTTTTTTTTTTTTGAG-A-----AAAAAATTTTCTT----------TGTTTAG------AAAAT--TTTAGT------TTTGTGTTAAAAC---A-----------G--------TAGGCCTACTCGG----TTGCTAATT-----TTA-----T-----TTTTTTG-------AATTT-C--------------------------------------------CTGG-----TGTTCTCAGATAT--TTTTT-C--AAAATGGTTGCCGAAATTTCTAAAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AACAGCGAAAGAGCCCATCGAGTTAAA-CG--CGAGACGAGAGCAA--AA---AAGAGGATTTCAAATTAAAA-GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTGATAAGAAGCAAAGAAGATAAAGTGCAATAAAAGTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.ACAGCGAAAGAGCCCATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.........AGAGCCCATCGAGTTAAA-CG--CGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
..CAGCGAAAGAGCCCATCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.............................G--CGAGACGAGAGCAA--AA---AAGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
AACAGCGAAAGAGCCCATCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
......GAAAGAGCCCATCGAGTTAAA-CG--CGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
................ATCGAGTTAAA-CG--CGAGACGAGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
droVir3
AAAAGCGAAAAAGCCCATCGAATTAAG-CC--CGAA-CGTAAGTGG--AA--GAAGGTAAGGCGATAAA-TAA-TTT-------------CTATT-----ATTGTGTGTCTGTGTGTGT-----------GTGTCTATGCGCG--------GGTGCAA--A-----------------------------------------------------------------------------------------A------------GAAATTAAAAGAAG-----------------------------------------------------------------------------------------------------A-AAAAA-------AAACATGGCGTA-CTCGAAAAACTGTCCTGGAAATATGCCGTTGCCAGAAAGTTTG---CCTCTTTTGT-----GGTTTATTCG-TCCC---------------------AG---TCCGCAATTCG------------TTAGCGTTCT----------------TCGTTCTGTGCGCGTCGCAACTTCTGCGTTAGCAAAGAT--TT-------------------------A-TT-------------AGATTTCTTC--TA--AT-------------------AAAAA-GT--------AT---AGTGCGTAGTTTCT-----TTT-----------GTAT----TTA------------------------ATTTG-------ATTTT-T--------------------------------------------TTTTGTTCTTGCGCGCAGATCA--TATAC-C--AAAATGGTTGCCGTTAGCATTGATTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........AAGCCCATCGAATTAAG-CC--CGAA-CG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.004000000000000000000001000000020010000000000000000000000000000000
..........AAGCCCATCGAATTAAG-CC--C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.004000000000000000000000000000011000200000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGTTCT----------------TCGTTCTGTGCGC................................................................................................................................................................................................................................................................................................................................2213.003000000000000000000002000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG------------TTAGCGTTCT----------------TCGTTC.......................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000002
........................................................GTAAGGCGATAAA-TAA-TTT-------------CTATT-----ATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000020000000000000000000000000000000000
........................................................GTAAGGCGATAAA-TAA-TTT-------------CTATT-----ATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002000000000000000000000000000020000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AAAATGGTTGCCGTTAGC........1912.002000000000000000000000000000000000020000000000000000000000000000
...AGCGAAAAAGCCCATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1612.002000000000000000000000000000000000000000000000000000000000000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCG------------TTAGCGTTCT----------------TCGTTCT......................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGTTGCCGTTAGC........1811.001000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGCGTCGCAACTTCTGCGTT...............................................................................................................................................................................................................................................................................................................2311.001000000000001000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCG------------TTAGCGTTCT----------------TCGTTCTGTGC..................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
.........AAAGCCCATCGAATTAAG-CC--CGAA-C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
......................TTAAG-CC--CGAA-CGTAAGTGG--AA--GAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
...............CATCGAATTAAG-CC--CGAA-CT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
......................................GTAAGTGG--AA--GAAGGTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAC-C--AAAATGGTTGCCGTTAGCATTG....2711.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCGTTCT----------------TCGTTCTG.....................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000001000000000000000000000000000
...............CATCGAATTAAG-CC--CGAA-CG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
..........AAGCCCATCGAATTAAG-CC--CG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...................GAATTAAG-CC--CGAA-CGTAAGTGG--A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
..........AAGCCCATCGAATTAAG-CC--CGAA-CGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGCCGTTAGCATTG....1911.001000000000000000000000000000100000000000000000000000000000000000
.........AAAGCCCATCGAATTAAG-CC--CGAA-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
....GCGAAAAAGCCCATCGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT----------------TCGTTCTGTGCGCGT..............................................................................................................................................................................................................................................................................................................................1811.001000000001000000000000000000000000000000000000000000000000000000
..........AAGCCCATCGAATTAAG-CC--CGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
...AGCGAAAAAGCCCATCGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-C--AAAATGGTTGCCGTTAGCATT.....2411.001000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGCCGTTGCCAGAAAGTTTG---CC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCAAAGAT--TT-------------------------A-TT-------------AG......................................................................................................................................................................................................................................................1911.001000000000000000000000000000100000000000000000000000000000000000
........AAAAGCCCATCGAATTAAG-CC--CGAA-CG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
.................................GAA-CGTAAGTGG--AA--GAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTTGCCGTTAGCATT.....1911.001000000000000000000000000000000000000010000000000000000000000000
..AAGCGAAAAAGCCCATCGAATTAAG-CC--C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000010000000000000000000000000000000
...AGCGAAAAAGCCCATCGAATTAAG-CC--C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.....................ATTAAG-CC--CGAA-CGTAAGTGG--AA--GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---CCTCTTTTGT-----GGTTTATTCG-TC..........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------TCGTTCTGTGCGCGTCGCAAC........................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTTGCCAGAAAGTTTG---CC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000001000000000000000000000000000000000000000000
................ATCGAATTAAG-CC--CGAA-CGTAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-C--AAAATGGTTGCCGTTAGCATT.....2311.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAACTGTCCTGGAAATATGCCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
............GCCCATCGAATTAAG-CC--CG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGCCGTTAGCATT.....1811.001000000000000000000000000000000100000000000000000000000000000000
.............................................................GCGATAAA-TAA-TTT-------------CTATT-----ATTGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
............................................................................T-------------CTATT-----ATTGTGTGTCTGTGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
.........AAAGCCCATCGAATTAAG-CC--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCG------------TTAGCGTTCT----------------TCGTTCTGT....................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCGTCGCAACTTCTGCG.................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTGCGCGTCGCAACTTCTGCGT................................................................................................................................................................................................................................................................................................................2611.001000000000000000000001000000000000000000000000000000000000000000
..........................................................................................CTATT-----ATTGTGTGTCTGTGTGTGT-----------GTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000001000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGCGCGTCGCAACTTCTGCGTTAGC............................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG------------TTAGCGTTCT----------------TCGTTCTGTGC..................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
.............CCCATCGAATTAAG-CC--CG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000010000000000000000000000000000000000
.....................ATTAAG-CC--CGAA-CGTAAGTGG--AA--GAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAC-C--AAAATGGTTGCCGTG...........2011.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAC-C--AAAATGGTTGCCGTTAGCATT.....2611.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TATAC-C--AAAATGGTTGCCGTTAGC........2511.001000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------ATTTT-T--------------------------------------------TTTTGTTCTTC................................................18150.071001000000000000000000000000000000000000000000000000000000000000
......................................................................................................TGTGTGTCTGTGTGTGT-----------GTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
AAAAGCGAAAAAACCCATCGAATTAAG-CC--CGAA-CGTTAGTGG----G-AAAGGTAAGCGAATG--AT----TT-------------TTTTT-----TTTCTTT---------------------------------------------------------TTTTTTTTAATTTAAATTCATGTATGTATATACATACATACGTAAAGAGCAAACTATAGAAGTATGTGTGTGTGCGAGAATGAGAATTGAATTGAAAGGCAATAAATAC------------------------AAAAT----------------------------------------------------------------TGA--GA----GG-CGAAA-------AAAAATGGCGAA--GCGTAAAACAGTCCTGGAAATATGCCGTTGTTTT-------C---TTG----CT------TGTTTGACAG-TTCTGCACA---------AAGTTCA-G---TTCGCAATTCG------------TCTTCAAT-C------TGTGTGCATCGTTACT------GTTGCCGC-------T--GGCAAAAGTAAAT---------------------TTTAA-AT-------------TTTT--------------------------------------------------T---C-------TTGAG----------------------------GTATTT-----TAA--------------TTGG------TA-TTT-TT-------------------------------------------TT---CTCTTTTTGGCAGTTCA--TATAC-C--AAAATGGTTGCCATTAGCATTGATTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAT-C------TGTGTGCATCGTTACT------G................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------TGTGTGCATCGTTACT------GTTGCC...........................................................................................................................................................................................................................................................................................................................2311.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTACT------GTTGCCGC-------T--GGC............................................................................................................................................................................................................................................................................................................2011.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCG------------TCTTCAAT-C------TGTGTGC................................................................................................................................................................................................................................................................................................................................................2211.001100000
......................................................................T----TT-------------TTTTT-----TTTCTTT---------------------------------------------------------TTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
droGri2
AAAAGCGAAAAATACCATCGAATCGAAAAT--CGAACGGAAAGTGT--AAA-AAAGGTGAGAGAAAATGAC---TTG----CATGT-----------------GTTCATTCGTGTGAGT-----------GTATGTGTGCGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------TGC-AAAAGAAATT---TC-G-TTAAA-------AAAAATGGCGTT-GAGCGAAAACTGTCCTGGAATTATTCCGTTAGCTTAG------------------------TGCTTAA-----CCC--ATAA--A-TTGT-------T--------------GACCGCCAT-TCGCAGTTCAGTTGCAATAT---------TCGTTCCTTGCGGGTCACAATTTCTTCT--GGAA--GAT--ATTCTTAATTTTTTTTTTTTACTG---------------------------------------------------------------GT--------AT---AAATCGAAGTGAGC-----TTT-----------GTGT----TCG------------------------TTTTA-------G-TTT-TTATTATAAATTCTGATTTAATTATATTATAAATAATAAATATATTATAATATATTTTCTTAGGTCCAAAATAG-C--AAAATGGTTGCCAATAA---------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
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Generated: 05/19/2015 at 01:46 AM