ID:

dsi_1124

 Coordinate:

2r:3170701-3170850 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.0 -5.8 -5.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGCGTTGAATATCACAGTTATAAAATGAAGATTAAACGTATTCTTAAACTAACAGATACCTTTGGTATATGACTAGTGGCTTCCTCACTTTTGAATATTTCTCCCTGTGCATAAAGTAGTCGCCTTCGTCACTGCGTTGAATATCACAGTTATAAAATGAAATTAAACTTATTCTTTCGCAATTCAATCTTCTTCCCCAGGAGGTATCACCCGTTTTAGAGGGCCAACGTCTAACGACTCACCATTTACA
********************************************************************************************************************................((((..(((((....((((..............)))))))))...))))........************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 M053
female body
 O001
Testis
 M024
male body		 SRR553488
RT_0-2 hours eggs
................................................................................................................................................................................TCGCAATTCAATCTTCTTCCCCAGGA................................................ 26 0 1 11.00 11 6 0 5 0 0 0 0 0 0
...........TCACAGTTATAAAATGAAGATTAAACGTA.................................................................................................................................................................................................................. 29 0 1 5.00 5 5 0 0 0 0 0 0 0 0
.....TGAATATCACAGTTATAAAATGAAGA........................................................................................................................................................................................................................... 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCTTCCCCAGGAGGTATCACCCGTT................................... 26 0 1 4.00 4 2 0 0 0 2 0 0 0 0
....................................................................................................................TAGTCGCCTTCGTCACTGCGTTGAA............................................................................................................. 25 0 1 4.00 4 2 2 0 0 0 0 0 0 0
.............................................................................................................................................TATCACAGTTATAAAATGAAATTAAACT................................................................................. 28 0 1 3.00 3 2 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TCACCCGTTTTAGAGGGCCAACGTC................... 25 0 1 3.00 3 1 1 0 1 0 0 0 0 0
.................................................................................................................................................................................CGCAATTCAATCTTCTTCCCCAGGA................................................ 25 0 1 3.00 3 2 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTAGAGGGCCAACGTC................... 17 0 1 2.00 2 0 2 0 0 0 0 0 0 0
....................................................................................................................TAGTCGCCTTCGTCACTGCGTTGAATA........................................................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0
...........................................................................................................TGCATAAAGTAGTCGCCTTCGTCAC...................................................................................................................... 25 0 1 2.00 2 1 0 0 1 0 0 0 0 0
....................................................................................................................................TGCGTTGAATATCACAGTTATAAAA............................................................................................. 25 0 2 2.00 4 0 4 0 0 0 0 0 0 0
..............................................................................................................................................................................TATCGCAATTCAATCTTCTTCCCCAGGA................................................ 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCTTCCCCAGGAGGTATCACCCGT.................................... 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0
............................................................................................................GCATAAAGTAGTCGCCTTCGTCACTGCGTT................................................................................................................ 30 0 1 2.00 2 0 0 2 0 0 0 0 0 0
TGCGTTGAATATCACAGTTATAAAA................................................................................................................................................................................................................................. 25 0 2 2.00 4 0 4 0 0 0 0 0 0 0
..................................................................................................................................................................TTAAACTTATTCTTTCGCAATTCAATC............................................................. 27 0 1 2.00 2 0 0 0 0 2 0 0 0 0
.....................................................................................................TCCCTGTGCATAAAGTAGTCGCCTT............................................................................................................................ 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0
.....................................................................................................TCCCTGTGCATAAAGTAGTCGCC.............................................................................................................................. 23 0 1 2.00 2 0 0 1 0 0 1 0 0 0
...............................................................................................................................................................................TTCGCAATTCAATCTTCTTCCCCAGGA................................................ 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0
................................................................................................................................................................................TCGCAATTCAATCTTCTTCCTCAGGAGG.............................................. 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................CCAGGAGGTATCACCCGTTTTAGAGGGC.......................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TCACCCGTTTTAGAGGGC.......................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........TATCACAGTTATAAAATGAAGATTAAACGTA.................................................................................................................................................................................................................. 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CAACGTCTAACGACTC.......... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCTTCCCCAGGAGGTATC.......................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TGTGCATAAAGTAGTCGCCTTCGTC........................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................TCTCCCTGTGCATAAAGTAGTCGCCTT............................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCTTCCCCAGGAGGTATCACCCGT.................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................AAGTAGTCGCCTTCGTCACTG.................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................GCATAAAGTAGTCGCC.............................................................................................................................. 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTTTAGAGGGCCAACGTCTAACGACT........... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................TATCACCCGTTTTAGAGGGCCAACGTC................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................TTAAACTTATTCTTTCGCAATACAATC............................................................. 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0
...............AGTTATAAAATGAAGATTAAACGTAT................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TAGAGGGCCAACGTCTAACGACTCACC....... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.....................................................................................................TCCCTGTGCATAAAGTAGTCGCCTTCGTCAC...................................................................................................................... 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................TAGTCGCCTTCGTCACTGC................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTAGAGGGCCAACGTCTAACGATT........... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................TCTTCCCCAGGAGGAATCACCCGTT................................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................TCCCCAGGAGGTATCACCCGTTTTAGA.............................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................CGCCTTCGTCACTGCGTTGAATATC......................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0
..............................................................................................................ATAAAGTAGTCGCCTTC........................................................................................................................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................CAAAGTTATAAAATGAAATTAAACTTA............................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...........TCACAGTTATAAAATGAAGATTAAACG.................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................TTCTCCCTGTGCATAAAGTAGTCGCCTT............................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTAGAGGGCCAACGTCTAACGACT........... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TCTTTCGCAATTCAATCTTCTTCCCCAGGA................................................ 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................TAGTCGTTTTCGTCACTGCGTTGAA............................................................................................................. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................CCCTGTGCATAAAGTAGTCGCCTT............................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................TTCAATCTTCTTCCCCAGGAGGTATC.......................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................TTTCTCCCTGTGCATAAAGTAGTCGCC.............................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................TTTCTCCCTGTGCATAAAGTAGTCGC............................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................TCTTTCGCAATTCAATCTTCTTCCCCA................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................TTGCAATTCAATCTTCTTCCCCAGGA................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................TCTTATCGCAATTCAATCTTCTTCCCC.................................................... 27 3 1 1.00 1 0 0 0 0 0 0 1 0 0
................................................................................................................................................CACAGTTATAAAATGAAATTAAACT................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....TGAATATCACAGTTATAAAATGAAGAT.......................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................TATTCTTTCGCAATTCAATCTTCTTCCC..................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................................TTCTCCCTGTGCATAAAGTAGTCGCC.............................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................TCTTCCCCAGGAGGTATCACCCGTT................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTTTAGAGGGCCAACGTCTAACGAC............ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................TTAAACTTATTCTTTCGCAATTCAA............................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................TATCGCAATTCAATCTTCTTCCCCAGGAGG.............................................. 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................TCCCTGTGCATAAAGTAGTCGCCTTC........................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................................................TGGTATATGACTAGTGGCTTCCTCA................................................................................................................................................................... 25 0 3 1.00 3 0 0 1 1 1 0 0 0 0
...........................................................................................................................................................................................................................AGGGCCAACGTCTAACGACTCACCAT..... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TAGAGGGCCAACGTCTAACGATTTG......... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTTAGAGGGCCAACGTCTAACGACTC.......... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACCACGGAGGTATCACCCGTTTTAGAGGGCC......................... 31 3 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCCCCAGGAGGTATCACCCGTT................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................ATCGCAATTCAATCTTCTTCCCCAGGA................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................CCTTCGTCACTGCGTTGAATATCACAGT.................................................................................................... 28 0 2 1.00 2 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................TTTCGCAATTCAATCTTCTTCCCCAGGA................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................TGTGCATAAAGTAGTCGCCTTCGTCAC...................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................TAAACTTATTCTTTCGCAATTCAATC............................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................AAAGTAGTCGCCTTCGTCACTGCGT................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....TTGAATATCACAGTTATAAAATGAAGA........................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................TCTCCCTGTGCATAAAGTAGTCGCCT............................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..........ATCACAGTTATAAAATGAAGATTAAACGTA.................................................................................................................................................................................................................. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................GTCGCCTTCGTCACTGCGTTGAA............................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................TTCCCCAGGAGGTATCACCCGTTTTT................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTTTTAGAGGGCCAACGTC................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................ATACCTTTGGTATATGACTAGTGGCT......................................................................................................................................................................... 26 0 3 0.67 2 0 1 0 1 0 0 0 0 0
...................................................................TATGACTAGTGGCTTCCTCACTTTT.............................................................................................................................................................. 25 0 3 0.67 2 0 0 0 2 0 0 0 0 0
............................................................TTTGGTATATGACTAGTGGCTTCCTC.................................................................................................................................................................... 26 0 3 0.67 2 0 0 1 0 1 0 0 0 0
.................................................................................TCCTCACTTTTGAATATTTCTCCCTG............................................................................................................................................... 26 0 3 0.67 2 0 0 0 0 0 2 0 0 0
...............................................................................................TATTTCTCCCTGTGCATAAAG...................................................................................................................................... 21 0 3 0.67 2 0 0 0 0 0 0 2 0 0
................GTTATAAAATGAAGA........................................................................................................................................................................................................................... 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................CGTCACTGCGTTGAATATCACAGTTA.................................................................................................. 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0
..............................................................TGGTATATGACTAGTGGCTTCCT..................................................................................................................................................................... 23 0 3 0.33 1 0 0 0 1 0 0 0 0 0
.........................................................................................TTTGAATATTTCTCCCTGTGCATAAAGT..................................................................................................................................... 28 0 3 0.33 1 0 0 0 0 0 1 0 0 0
........................................................TACCTTTGGTATATGACTAGTGGCTT........................................................................................................................................................................ 26 0 3 0.33 1 0 0 0 1 0 0 0 0 0
........................................................................................TTTTGAATATTTCTCCCTGTGCATA......................................................................................................................................... 25 0 3 0.33 1 0 0 1 0 0 0 0 0 0
..............................................................TGGTATATGACTAGTGGCTTCCTCACTTT............................................................................................................................................................... 29 0 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................................................TCACTTTTGAATATTTCTCCCTGTGC............................................................................................................................................ 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................................................TCACTTTTGAATATTTCTCCCTGTGCA........................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0
..............................................................TGGTATATGACTAGTGGCTTCCTC.................................................................................................................................................................... 24 0 3 0.33 1 0 0 0 0 0 1 0 0 0
.........................................................................................TTTGAATATTTCTCTCTGTGCATA......................................................................................................................................... 24 1 3 0.33 1 0 0 1 0 0 0 0 0 0
..............................................................TGGTATATGACTAGTGGC.......................................................................................................................................................................... 18 0 3 0.33 1 0 1 0 0 0 0 0 0 0
...................................................................................CTCACTTTTGAATATTTCTCCCTGTGCA........................................................................................................................................... 28 0 3 0.33 1 1 0 0 0 0 0 0 0 0
..................................................................ATATGACTAGTGGCTTCCTCACTTT............................................................................................................................................................... 25 0 3 0.33 1 0 0 0 0 1 0 0 0 0
........................................................................................TTTTGAATATTTCTCCCTGTGCA........................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................TGAATATCACAGTTA.................................................................................................. 15 0 3 0.33 1 0 1 0 0 0 0 0 0 0
..............................................................TGGTATATGACTAGTGGCTTCCTCACT................................................................................................................................................................. 27 0 3 0.33 1 0 0 0 1 0 0 0 0 0
............................................................................TGGCTTCCTCACTTTTGAATATTTC..................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0
................................................................................................ATTTCTCCCTGTGCATA......................................................................................................................................... 17 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.....TGAATATCACAGTTA...................................................................................................................................................................................................................................... 15 0 3 0.33 1 0 1 0 0 0 0 0 0 0
.................................................................TATATGACTAGTGGCTTCCTCACT................................................................................................................................................................. 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.............................................................TTGGTATATGACTAGTGGCTTCCTC.................................................................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0
...............TGTTAGAAAATGAAGATTAA....................................................................................................................................................................................................................... 20 2 4 0.25 1 0 0 0 1 0 0 0 0 0
..................................................................................................TTCTCCCTGTGCATA......................................................................................................................................... 15 0 6 0.17 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................TTATAAAATGAAATT...................................................................................... 15 0 10 0.10 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................CAACGACTCACCATTTGCT 19 3 18 0.06 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................AACGGGTAACGACTCA......... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
........................................................TACCTTCGGGATATGAGT................................................................................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0
...............................................................................CTTCCTTACTTTTGA............................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................ATCTTCTGCCCCAGGAG............................................... 17 1 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

ACGCAACTTATAGTGTCAATATTTTACTTCTAATTTGCATAAGAATTTGATTGTCTATGGAAACCATATACTGATCACCGAAGGAGTGAAAACTTATAAAGAGGGACACGTATTTCATCAGCGGAAGCAGTGACGCAACTTATAGTGTCAATATTTTACTTTAATTTGAATAAGAAAGCGTTAAGTTAGAAGAAGGGGTCCTCCATAGTGGGCAAAATCTCCCGGTTGCAGATTGCTGAGTGGTAAATGT
*************************************************************................((((..(((((....((((..............)))))))))...))))........******************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
...............................................................................................................AGTTCATCAGCGGAAGCGGTGACC................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................TCAGCGGAAGCGGTGA..................................................................................................................... 16 1 7 0.43 3 1 1 0 1 0 0
.....................................................................................................................TCAGCGGAAGCGGTGAC.................................................................................................................... 17 1 3 0.33 1 0 1 0 0 0 0
............GTGTGAATATTTTACTGCTA.......................................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 1 0 0 0
......................................................................................................................................................................................AAGTTAGAAGAAGGGC.................................................... 16 1 5 0.20 1 0 1 0 0 0 0
..................................................................................................................TCATCGGCGGAAGCGGTGAT.................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0
....................................................................................................................................................................................TTAAGGTAGAAGACGGGGT................................................... 19 2 6 0.17 1 0 1 0 0 0 0
..............................................................................................................................GGAGTGACGCACGTTATAGT........................................................................................................ 20 3 7 0.14 1 0 1 0 0 0 0
.........................................................................................................................CGGCAGCAGTTAGGCAACTT............................................................................................................. 20 3 7 0.14 1 0 0 0 0 1 0
.................................................................................AGGAGTGAAAACTGA.......................................................................................................................................................... 15 1 17 0.06 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................GGTTGTAGATTGCTG............ 15 1 18 0.06 1 0 0 0 1 0 0
........................................AAGAATTTAATTGTCT.................................................................................................................................................................................................. 16 1 19 0.05 1 0 0 0 1 0 0
......................................................................................................................CAGCGGAAGCGGTGA..................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:3170651-3170900 + dsi_1124 TGCGTTGAATATCACAGTTATAAAATGAAGATTAAACGTATTCTTAAACTAACAGATACCTTTGGTATATGACT-AGTGGCTTCCTCACTTTTGAATATTTCTCCCTGTGCAT-AAAGTAGTCGCCT----------------------TCGTCACTGCGTTGAATAT---CACAGTTATAAAATGAA---------------------------------------------ATTAAACTTATTCTT--TCGCAAT--------TCAATCTT--CTTCCCCAGGAGGTATCA---CCCGTTTTAGAGGGCCAACG--TCTAACGACTCACCATTTACA
droSec2 scaffold_109:14508-14704 + GAT------------------------------------------------------ACCTTTGGTATATGACT--TTGGCTTCCTCACTTTTGAATATTTCTCCCTGTGCAT-AAAGTAGTCGCCT----------------------TCGTCACTGCGTTGAATAT---CACAGTTATAAAATGAA--------------------------------------------AATTAAACTTATTCTT-ATCGCAAT--------TCAATCTT--CTTCCCCAGGAGGTATCA---CCCGTTTTAGAGGGCCAACG--TCTAACGACCCACCATATACA
dm3 chrXHet:81055-81212 - GAT------------------------------------------------------ACCTTTGGTATATGACT-ATTGGTTTCCTCACTTTTGAATATTTCTCACTGTGCAT-AAAGTAGTCGCCT----------------------TCGTCACTGCATTGAATAC---CACAGTTATAAAATGAA--------------------------------------------GATTAAACTTATTCTT-AT-----------------------------------------------------CGCAATTCAACG--TCTTGCGACCCACCATGTACA
droEre2 scaffold_4690:18742949-18743214 - GGC------------------------------------------------------ACCTTTGGTGTATTACTGATTATTATCTTCACTCTTAAATATTTCCTCCTGTGCATGAAAGTAGACGCCTTCGCACACTCTCCTGTAGCGCTTCGTCACTACGTGGACTAC---CGTAGTCATAAAATTAACTTTCATAATAATAACATGAGAACTAGAAAACTCAGCTTTGGAAGATTAAACATATCCTT-ATCGCAAT--------CCAATCTC--CTTCCCCAGGAAGTATCA---CCCGTTTTAGAGGGCCAACG--TCTCACGACCCACCATGTACA
droYak3 chrXh:113499-113727 + TA--------------------------------------------------------CCTTTGATGTTT--CT-ATTATTATCCTCACTCTTGAATATTTTTTGCTGTGCAT-GAAGTG--CGC----------TTTCCTGTAGTGCTTCGTCACTACGTGGACTACTAGCGCAGTCATAAAATTAACTTTTAT-----------GAGAACT--------C-------GATGATTAAACTTATTCTT-ATCACAAC---TTAT-CGCAACTC--CTTCCCCAGGAGGTATCA---CCCGTTGTAAAGGGCCATCG--CCTCACTACCCACCATGTACA
droEug1 scf7180000408987:14852-14919 + TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACATC--CATTCCCAGGAGATCTCA---CCTGTTCCAGAGGGCCAGCG--ACTTACGACGAAACATGTGAA
droBia1 scf7180000301397:24325-24425 - AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTGAA---------------------------------------------TTTCAATGCATACATACTTTCTAT--------CCTATCTT--TTTCTTCAGAAGGTATTA---CCCGTTCCGGAGGGCCAACG--ACTCTCGACACAGCATGTGCA
droEle1 scf7180000491087:423422-423508 + AAC------------------------------------------------------TCCGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCATCTTCCAATCCCGTTTCCCCCAGGAGGCATCG---CCCGTGCCGGCTGGCCAACG--ACTGACCAGGCAGCATGTGGA
droRho1 scf7180000778808:18333-18398 - C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCC--CTTCCCCAGGAGGTATCG---CCTGTTCCGGAGGGCCAGCG--ACTCACCACCCAGCATATGCA
droFic1 scf7180000453495:225074-225135 - CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TCTTCCCAGGAGGCATCC---CCCGTTCCGGAGGGCCAGCG--TCTCAGCAGCCAGCACATCCA
droKik1 scf7180000302610:740296-740349 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGATGCATCG---CCAGTTCCCGAGGGCCAACG--CCTGACCACCCAGCATATCCA
droAna3 scaffold_13335:505298-505360 + TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCCAGGAACCATCATCTCCAGTTCCCGAGGGCCAACG--CCTCACCACCCAGCACGTCCA
droBip1 scf7180000395165:22678-22742 + CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--CCCTTCCAGGAGCCATCGTCTCCAGTTCCTGAAGGCCAACG--CCTCACCACCCAGCACGTCCA
dp5 XL_group1e:503670-503712 + C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---CCTGTGCCGGAGGGCCAGCG--GCTGACCACACAGCACGTTAA
droPer2 scaffold_30:710763-710805 - C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---CCTGTGCCGGAGGGCCAGCG--GTTGACCACACAGCACGTCAA
droWil2 scf2_1100000004909:6429658-6429796 - AGTGGCCTATGCCAATGCCTTGGAGGTAGGTAGATTCTTTGTCATAGACTAATGCGTCCAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATCTCTCT--------CTCTCACT--CGTGTACAGAATGCTCTG---CCCGTGCCTGATGGCCAACG--GTTGACCACTTCTCATGTCAC
droVir3 scaffold_12928:230058-230117 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCTCAGAGGCCACTG---CCAGATGTGGAGCCCCAGAA--GCTGACCAGCGAGCACGTCCA
droMoj3 scaffold_6359:1574048-1574081 + G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGCCACCGAAGCTGACGAGTCAGCACGTGAA
droGri2 scaffold_15203:6697198-6697216 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGACGGAGCATGTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGCGTTGAATATCACAGTTATAAAATGAAGATTAAACGTATTCTTAAACTAACAGATACCTTTGGTATATGACT-AGTGGCTTCCTCACTTTTGAATATTTCTCCCTGTGCAT-AAAGTAGTCGCCT----------------------TCGTCACTGCGTTGAATAT---CACAGTTATAAAATGAA---------------------------------------------ATTAAACTTATTCTT--TCGCAAT--------TCAATCTT--CTTCCCCAGGAGGTATCA---CCCGTTTTAGAGGGCCAACG--TCTAACGACTCACCATTTACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................TCGCAAT--------TCAATCTT--CTTCCCCAGGA.....................................................26111.001100000065000000000
...........TCACAGTTATAAAATGAAGATTAAACGTA...........................................................................................................................................................................................................................................................................................................2915.00500000050000000000
.....TGAATATCACAGTTATAAAATGAAGA....................................................................................................................................................................................................................................................................................................................2614.00400000040000000000
...............................................................................................................................................................................................................................................................................TT--CTTCCCCAGGAGGTATCA---CCCGTT.....................................2614.00400000020000002000
......................................................................................................................TAGTCGCCT----------------------TCGTCACTGCGTTGAA..............................................................................................................................................................................2514.00400000020002000000
.....................................................................................................................................................................TAT---CACAGTTATAAAATGAA---------------------------------------------ATTAAACT..................................................................................................2813.00300000021000000000
..................................................................................................................................................................................................................................................................................................TCA---CCCGTTTTAGAGGGCCAACG--TC...................2513.00300000010001010000
...........................................................................................................................................................................................................................................................CGCAAT--------TCAATCTT--CTTCCCCAGGA.....................................................2513.00300000021000000000
.............................................................................................................................................................................................................................................................................................................TTTAGAGGGCCAACG--TC...................1712.00200000000002000000
......................................................................................................................TAGTCGCCT----------------------TCGTCACTGCGTTGAATA............................................................................................................................................................................2712.00200000002000000000
............................................................................................................TGCAT-AAAGTAGTCGCCT----------------------TCGTCAC.......................................................................................................................................................................................2512.00200000010000010000
............................................................................................................................................................TGCGTTGAATAT---CACAGTTATAAAA...........................................................................................................................................................2522.00400000000004000000
...............................................................................................................................................................................................................................................................................TT--CTTCCCCAGGAGGTATCA---CCCGT......................................2512.00200000011000000000
.............................................................................................................GCAT-AAAGTAGTCGCCT----------------------TCGTCACTGCGTT.................................................................................................................................................................................3012.00200000002000000000
TGCGTTGAATATCACAGTTATAAAA..........................................................................................................................................................................................................................................................................................................................2522.00400000000004000000
..........................................................................................................................................................................................................................................TTAAACTTATTCTT--TCGCAAT--------TCAATC....................................................................2712.00200000000000002000
......................................................................................................TCCCTGTGCAT-AAAGTAGTCGCCT----------------------T.............................................................................................................................................................................................2512.00200000000000020000
......................................................................................................TCCCTGTGCAT-AAAGTAGTCGCC.....................................................................................................................................................................................................................2312.00200010001000000000
.......................................................................................................................................................................................................................................................T--TCGCAAT--------TCAATCTT--CTTCCCCAGGA.....................................................2712.00200000002000000000
........................................................................................................................................................................................................................................................................................CCAGGAGGTATCA---CCCGTTTTAGAGGGC............................2811.00100000001000000000
..................................................................................................................................................................................................................................................................................................TCA---CCCGTTTTAGAGGGC............................1811.00100000000001000000
.........TATCACAGTTATAAAATGAAGATTAAACGTA...........................................................................................................................................................................................................................................................................................................3111.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................CAACG--TCTAACGACTC..........1611.00100000000001000000
...............................................................................................................................................................................................................................................................................TT--CTTCCCCAGGAGGTATC...............................................1911.00100000000001000000
..........................................................................................................TGTGCAT-AAAGTAGTCGCCT----------------------TCGTC.........................................................................................................................................................................................2511.00100000001000000000
....................................................................................................TCTCCCTGTGCAT-AAAGTAGTCGCCT----------------------T.............................................................................................................................................................................................2711.00100000010000000000
................................................................................................................................................................................................................................................................................T--CTTCCCCAGGAGGTATCA---CCCGT......................................2411.00100000000001000000
...................................................................................................................AAGTAGTCGCCT----------------------TCGTCACTG.....................................................................................................................................................................................2111.00100000000001000000
.............................................................................................................GCAT-AAAGTAGTCGCC.....................................................................................................................................................................................................................1611.00100000000001000000
............................................................................................................................................................................................................................................................................................................TTTTAGAGGGCCAACG--TCTAACGACT...........2611.00100000000001000000
................................................................................................................................................................................................................................................................................................TATCA---CCCGTTTTAGAGGGCCAACG--TC...................2711.00100000000001000000
...............AGTTATAAAATGAAGATTAAACGTAT..........................................................................................................................................................................................................................................................................................................2611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................TAGAGGGCCAACG--TCTAACGACTCACC.......2711.00100010000000000000
......................................................................................................TCCCTGTGCAT-AAAGTAGTCGCCT----------------------TCGTCAC.......................................................................................................................................................................................3111.00100000010000000000
......................................................................................................................TAGTCGCCT----------------------TCGTCACTGC....................................................................................................................................................................................1911.00100000000001000000
.....................................................................................................................................................................................................................................................................................TCCCCAGGAGGTATCA---CCCGTTTTAGA................................2711.00100000001000000000
..........................................................................................................................CGCCT----------------------TCGTCACTGCGTTGAATAT---C.......................................................................................................................................................................2511.00101000000000000000
...............................................................................................................AT-AAAGTAGTCGCCT----------------------TC............................................................................................................................................................................................1711.00100000000001000000
...........TCACAGTTATAAAATGAAGATTAAACG.............................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...................................................................................................TTCTCCCTGTGCAT-AAAGTAGTCGCCT----------------------T.............................................................................................................................................................................................2811.00100000001000000000
.............................................................................................................................................................................................................................................................................................................TTTAGAGGGCCAACG--TCTAACGACT...........2511.00100000010000000000
....................................................................................................................................................................................................................................................TCTT--TCGCAAT--------TCAATCTT--CTTCCCCAGGA.....................................................3011.00100000010000000000
.......................................................................................................CCCTGTGCAT-AAAGTAGTCGCCT----------------------T.............................................................................................................................................................................................2411.00100001000000000000
................................................................................................................................................................................................................................................................T--------TCAATCTT--CTTCCCCAGGAGGTATC...............................................2611.00100000000001000000
..................................................................................................TTTCTCCCTGTGCAT-AAAGTAGTCGCC.....................................................................................................................................................................................................................2711.00100000001000000000
..................................................................................................TTTCTCCCTGTGCAT-AAAGTAGTCGC......................................................................................................................................................................................................................2611.00100000000000010000
....................................................................................................................................................................................................................................................TCTT--TCGCAAT--------TCAATCTT--CTTCCCCA........................................................2711.00100010000000000000
...........................................................................................................................................................................CACAGTTATAAAATGAA---------------------------------------------ATTAAACT..................................................................................................2511.00100000010000000000
.....TGAATATCACAGTTATAAAATGAAGAT...................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.................................................................................................................................................................................................................................................TATTCTT--TCGCAAT--------TCAATCTT--CTTCCC..........................................................2811.00100000000000001000
...................................................................................................TTCTCCCTGTGCAT-AAAGTAGTCGCC.....................................................................................................................................................................................................................2611.00100000001000000000
................................................................................................................................................................................................................................................................................T--CTTCCCCAGGAGGTATCA---CCCGTT.....................................2511.00100000010000000000
............................................................................................................................................................................................................................................................................................................TTTTAGAGGGCCAACG--TCTAACGAC............2511.00100000000001000000
..........................................................................................................................................................................................................................................TTAAACTTATTCTT--TCGCAAT--------TCAA......................................................................2511.00100000000000010000
......................................................................................................TCCCTGTGCAT-AAAGTAGTCGCCT----------------------TC............................................................................................................................................................................................2611.00100000000000001000
..............................................................TGGTATATGACT-AGTGGCTTCCTCA...........................................................................................................................................................................................................................................................2531.00300000001000011000
..................................................................................................................................................................................................................................................................................................................AGGGCCAACG--TCTAACGACTCACCAT.....2611.00100000000001000000
.....................................................................................................................................................................................................................................................................................TCCCCAGGAGGTATCA---CCCGTT.....................................2211.00100000000001000000
............................................................................................................................CCT----------------------TCGTCACTGCGTTGAATAT---CACAGT..................................................................................................................................................................2821.00200000011000000000
......................................................................................................................................................................................................................................................TT--TCGCAAT--------TCAATCTT--CTTCCCCAGGA.....................................................2811.00100000010000000000
..........................................................................................................TGTGCAT-AAAGTAGTCGCCT----------------------TCGTCAC.......................................................................................................................................................................................2711.00100000001000000000
...........................................................................................................................................................................................................................................TAAACTTATTCTT--TCGCAAT--------TCAATC....................................................................2611.00100000000000010000
..................................................................................................................AAAGTAGTCGCCT----------------------TCGTCACTGCGT..................................................................................................................................................................................2511.00100000000001000000
....TTGAATATCACAGTTATAAAATGAAGA....................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
....................................................................................................TCTCCCTGTGCAT-AAAGTAGTCGCCT----------------------..............................................................................................................................................................................................2611.00100000000000001000
..........ATCACAGTTATAAAATGAAGATTAAACGTA...........................................................................................................................................................................................................................................................................................................3011.00100000010000000000
........................................................................................................................GTCGCCT----------------------TCGTCACTGCGTTGAA..............................................................................................................................................................................2311.00100000000000010000
....................................................................................................................................................................................................................................................................................TTCCCCAGGAGGTATCA---CCCGTTTTT..................................2611.00100000010000000000
...........................................................................................................................................................................................................................................................................................................GTTTTAGAGGGCCAACG--TC...................1911.00100000000001000000
.......................................................ATACCTTTGGTATATGACT-AGTGGCT.................................................................................................................................................................................................................................................................2630.67200000000001010000
...................................................................TATGACT-AGTGGCTTCCTCACTTTT......................................................................................................................................................................................................................................................2530.67200000000000020000
............................................................TTTGGTATATGACT-AGTGGCTTCCTC............................................................................................................................................................................................................................................................2630.67200000001000001000
..................................................................................TCCTCACTTTTGAATATTTCTCCCTG.......................................................................................................................................................................................................................................2630.67200020000000000000
................................................................................................TATTTCTCCCTGTGCAT-AAAG.............................................................................................................................................................................................................................2130.67200002000000000000
................GTTATAAAATGAAGA....................................................................................................................................................................................................................................................................................................................1520.50100000010000000000
......................................................................................................................................................CGTCACTGCGTTGAATAT---CACAGTTA................................................................................................................................................................2620.50100000000001000000
..............................................................TGGTATATGACT-AGTGGCTTCCT.............................................................................................................................................................................................................................................................2330.33100000000000010000
..........................................................................................TTTGAATATTTCTCCCTGTGCAT-AAAGT............................................................................................................................................................................................................................2830.33100010000000000000
........................................................TACCTTTGGTATATGACT-AGTGGCTT................................................................................................................................................................................................................................................................2630.33100000000000010000
.........................................................................................TTTTGAATATTTCTCCCTGTGCAT-A................................................................................................................................................................................................................................2530.33100000001000000000
..............................................................TGGTATATGACT-AGTGGCTTCCTCACTTT.......................................................................................................................................................................................................................................................2930.33100000010000000000
.....................................................................................TCACTTTTGAATATTTCTCCCTGTGC....................................................................................................................................................................................................................................2630.33100000010000000000
.....................................................................................TCACTTTTGAATATTTCTCCCTGTGCA...................................................................................................................................................................................................................................2730.33100000010000000000
..............................................................TGGTATATGACT-AGTGGCTTCCTC............................................................................................................................................................................................................................................................2430.33100010000000000000
..............................................................TGGTATATGACT-AGTGGC..................................................................................................................................................................................................................................................................1830.33100000000001000000
....................................................................................CTCACTTTTGAATATTTCTCCCTGTGCA...................................................................................................................................................................................................................................2830.33100000010000000000
..................................................................ATATGACT-AGTGGCTTCCTCACTTT.......................................................................................................................................................................................................................................................2530.33100000000000001000
.........................................................................................TTTTGAATATTTCTCCCTGTGCA...................................................................................................................................................................................................................................2330.33100000010000000000
.................................................................................................................................................................TGAATAT---CACAGTTA................................................................................................................................................................1530.33100000000001000000
..............................................................TGGTATATGACT-AGTGGCTTCCTCACT.........................................................................................................................................................................................................................................................2730.33100000000000010000
.............................................................................TGGCTTCCTCACTTTTGAATATTTC.............................................................................................................................................................................................................................................2530.33100000010000000000
.................................................................................................ATTTCTCCCTGTGCAT-A................................................................................................................................................................................................................................1730.33100000010000000000
.....TGAATATCACAGTTA...............................................................................................................................................................................................................................................................................................................................1530.33100000000001000000
.................................................................TATATGACT-AGTGGCTTCCTCACT.........................................................................................................................................................................................................................................................2430.33100000010000000000
.............................................................TTGGTATATGACT-AGTGGCTTCCTC............................................................................................................................................................................................................................................................2530.33100000000001000000
...................................................................................................TTCTCCCTGTGCAT-A................................................................................................................................................................................................................................1560.17100000001000000000
................................................................................................................................................................................TTATAAAATGAA---------------------------------------------ATT.......................................................................................................15100.10100000000001000000
droSec2
GAT------------------------------------------------------ACCTTTGGTATATGACT--TTGGCTTCCTCACTTTTGAATATTTCTCCCTGTGCAT-AAAGTAGTCGCCT----------------------TCGTCACTGCGTTGAATAT---CACAGTTATAAAATGAA--------------------------------------------AATTAAACTTATTCTT-ATCGCAAT--------TCAATCTT--CTTCCCCAGGAGGTATCA---CCCGTTTTAGAGGGCCAACG--TCTAACGACCCACCATATACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................TATCA---CCCGTTTTAGAGGGCCAACG--TC...................2711.0011000
dm3
GAT------------------------------------------------------ACCTTTGGTATATGACT-ATTGGTTTCCTCACTTTTGAATATTTCTCACTGTGCAT-AAAGTAGTCGCCT----------------------TCGTCACTGCATTGAATAC---CACAGTTATAAAATGAA--------------------------------------------GATTAAACTTATTCTT-AT-----------------------------------------------------CGCAATTCAACG--TCTTGCGACCCACCATGTACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................TGAATATTTCTCACTGTGCAT-AAAG.............................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TGCAT-AAAGTAGTCGCCT----------------------TCGTCACT......................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................GTGCAT-AAAGTAGTCGCCT----------------------TC............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................TTCCTCACTTTTGAATATTTCTCA..........................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GCAATTCAACG--TCTTGCGACCCACCA......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TTAAACTTATTCTT-AT-----------------------------------------------------CG.................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TGTGCAT-AAAGTAGTCGCCT----------------------TCGTCACT......................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TTCTT-AT-----------------------------------------------------CGCAATTCAACG--TC...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................GGTTTCCTCACTTTTGAATA.................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................CTTTGGTATATGACT-ATTGGT..................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................AATTCAACG--TCTTGCGACCCA.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TTGAATATTTCTCACTGTGCA...................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TAC---CACAGTTATAAAATGAA--------------------------------------------G..........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................ACTGCATTGAATAC---CACAGTT.................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
GGC------------------------------------------------------ACCTTTGGTGTATTACTGATTATTATCTTCACTCTTAAATATTTCCTCCTGTGCATGAAAGTAGACGCCTTCGCACACTCTCCTGTAGCGCTTCGTCACTACGTGGACTAC---CGTAGTCATAAAATTAACTTTCATAATAATAACATGAGAACTAGAAAACTCAGCTTTGGAAGATTAAACATATCCTT-ATCGCAAT--------CCAATCTC--CTTCCCCAGGAAGTATCA---CCCGTTTTAGAGGGCCAACG--TCTCACGACCCACCATGTACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................GCGCTTCGTCACTACGTGGACT.............................................................................................................................................................................22100.1010000010
droYak3
TA--------------------------------------------------------CCTTTGATGTTT--CT-ATTATTATCCTCACTCTTGAATATTTTTTGCTGTGCAT-GAAGTG--CGC----------TTTCCTGTAGTGCTTCGTCACTACGTGGACTACTAGCGCAGTCATAAAATTAACTTTTAT-----------GAGAACT--------C-------GATGATTAAACTTATTCTT-ATCACAAC---TTAT-CGCAACTC--CTTCCCCAGGAGGTATCA---CCCGTTGTAAAGGGCCATCG--CCTCACTACCCACCATGTACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACATC--CATTCCCAGGAGATCTCA---CCTGTTCCAGAGGGCCAGCG--ACTTACGACGAAACATGTGAASizeHit CountTotal NormTotal
No Reads
droBia1
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTGAA---------------------------------------------TTTCAATGCATACATACTTTCTAT--------CCTATCTT--TTTCTTCAGAAGGTATTA---CCCGTTCCGGAGGGCCAACG--ACTCTCGACACAGCATGTGCASizeHit CountTotal NormTotal
No Reads
droEle1
AAC------------------------------------------------------TCCGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCATCTTCCAATCCCGTTTCCCCCAGGAGGCATCG---CCCGTGCCGGCTGGCCAACG--ACTGACCAGGCAGCATGTGGASizeHit CountTotal NormTotal
No Reads
droRho1
C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCC--CTTCCCCAGGAGGTATCG---CCTGTTCCGGAGGGCCAGCG--ACTCACCACCCAGCATATGCASizeHit CountTotal NormTotal
No Reads
droFic1
CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TCTTCCCAGGAGGCATCC---CCCGTTCCGGAGGGCCAGCG--TCTCAGCAGCCAGCACATCCASizeHit CountTotal NormTotal
No Reads
droKik1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGATGCATCG---CCAGTTCCCGAGGGCCAACG--CCTGACCACCCAGCATATCCASizeHit CountTotal NormTotal
No Reads
droAna3
TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCCAGGAACCATCATCTCCAGTTCCCGAGGGCCAACG--CCTCACCACCCAGCACGTCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--CCCTTCCAGGAGCCATCGTCTCCAGTTCCTGAAGGCCAACG--CCTCACCACCCAGCACGTCCASizeHit CountTotal NormTotal
No Reads
dp5
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---CCTGTGCCGGAGGGCCAGCG--GCTGACCACACAGCACGTTAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---CCTGTGCCGGAGGGCCAGCG--GTTGACCACACAGCACGTCAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AGTGGCCTATGCCAATGCCTTGGAGGTAGGTAGATTCTTTGTCATAGACTAATGCGTCCAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATCTCTCT--------CTCTCACT--CGTGTACAGAATGCTCTG---CCCGTGCCTGATGGCCAACG--GTTGACCACTTCTCATGTCACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................TG---CCCGTGCCTGATGGCCA..........................1911.00101000
droVir3
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCTCAGAGGCCACTG---CCAGATGTGGAGCCCCAGAA--GCTGACCAGCGAGCACGTCCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGCCACCGAAGCTGACGAGTCAGCACGTGAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGACGGAGCATGTGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:07 PM