ID:

dsi_11235

 Coordinate:

3l:16365310-16365459 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.5 -11.4 -11.4

Flybase annnotation

CDS [3l_16365460_16365582_+]; exon [3l_16365460_16365582_+]; intron [3l_16364829_16365459_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATCTAACTCTGAAATCAGTCGCTGCCAAATTTATAAGCTCTCTGAACCCTTTGAAACATAATCCACGTACTTAAATTCTACCCCCCTCATATCCCTGCATACGCCATTGATTAACTTGTCTCTTCCTGCTTAATTATTTTCCCAAACGCTGCCGAAACGCAAACACGCGCAAACTCAAAATAACGCTGGGAAAACATAGCTCCGCTCGGGCCTTGGAAAATCCGGTTGTGACCGGTATGGTGAAATCCT
**************************************************..........................................((((.((..........(((......))).............(((((((......((((((......))).....))).......))))))).)).))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M023
head
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body
.......................TGCCAACTTTATCAACTCTCT.............................................................................................................................................................................................................. 21 3 2 17.00 34 34 0 0 0 0 0 0 0 0
......................CTGCCAACTTTATCAACTCTCT.............................................................................................................................................................................................................. 22 3 2 12.00 24 24 0 0 0 0 0 0 0 0
......................CTGCCAACTTTATCAACTCTC............................................................................................................................................................................................................... 21 3 5 6.00 30 30 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCCGCTCGGGCCTTGGAAAATCCGGT....................... 26 0 1 2.00 2 1 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................AACATAGCTCCGCTCGGGCCT.................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................TGCCAAATTTATAAGCTCTCTGAACCC........................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................AATAACGCTGGGAAAACATAG.................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................TCGGGCCTTGGAAAATCCGGTTGTGAC................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................GTCGCTGCCAAATTTATAAGC................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................GCCCTTGAAAATCCGG........................ 16 2 20 0.65 13 2 0 4 0 0 0 0 7 0
.........................................................................................................................................................................................................TCCGGTCGGGCCTAGGAAA.............................. 19 2 5 0.40 2 0 2 0 0 0 0 0 0 0
......................CTGCCAACTTTATCAACTCT................................................................................................................................................................................................................ 20 3 15 0.33 5 5 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GGCCCTTGAAAATCCGG........................ 17 2 16 0.25 4 0 2 0 0 0 0 0 2 0
..............................................................................................................................................................CGAAAAGACGCGCAAACT.......................................................................... 18 2 9 0.22 2 0 0 0 0 0 0 0 2 0
............................................................................................................................................................................................................GCTCAGGCCTTGGAA............................... 15 1 5 0.20 1 0 1 0 0 0 0 0 0 0
.......................TGCCAACTTTATCAACTCTC............................................................................................................................................................................................................... 20 3 11 0.18 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CGGTCGGGCCTAGGAAAAA............................ 19 3 10 0.10 1 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................CGACCTCCGCTCGGGCCTT................................... 19 3 12 0.08 1 0 0 0 1 0 0 0 0 0
.................................................................ACGGACTTAAATTCTAAC....................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 1
..................GTCGCTGCCAAGTTT......................................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.........CTGAACTTAGTCGCTACC............................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTAGATTGAGACTTTAGTCAGCGACGGTTTAAATATTCGAGAGACTTGGGAAACTTTGTATTAGGTGCATGAATTTAAGATGGGGGGAGTATAGGGACGTATGCGGTAACTAATTGAACAGAGAAGGACGAATTAATAAAAGGGTTTGCGACGGCTTTGCGTTTGTGCGCGTTTGAGTTTTATTGCGACCCTTTTGTATCGAGGCGAGCCCGGAACCTTTTAGGCCAACACTGGCCATACCACTTTAGGA
**************************************************..........................................((((.((..........(((......))).............(((((((......((((((......))).....))).......))))))).)).))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
.......................ACGGTTGAAATAGTTGAGAGA.............................................................................................................................................................................................................. 21 3 2 5.50 11 11 0 0 0 0 0 0
..........................................................................TTAAGATGGGGGGAG................................................................................................................................................................. 15 0 1 3.00 3 0 2 1 0 0 0 0
..............................................................................GATGTGGAGAGTACAGGGA......................................................................................................................................................... 19 3 9 1.67 15 15 0 0 0 0 0 0
...........................................................................TAAGATGGGGAGAGTA............................................................................................................................................................... 16 1 1 1.00 1 0 1 0 0 0 0 0
...............................................................................ATGGGGAGAGTACAGGGA......................................................................................................................................................... 18 2 1 1.00 1 1 0 0 0 0 0 0
.........................................................................CTTAAGATGGGGGGAG................................................................................................................................................................. 16 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................................TTAAGATGGGGGGAGA................................................................................................................................................................ 16 1 2 1.00 2 1 0 1 0 0 0 0
......................GACGGTTGAAATAGTTGAGA................................................................................................................................................................................................................ 20 3 15 0.87 13 13 0 0 0 0 0 0
...........................................................................TAAGATGGGGGGAGA................................................................................................................................................................ 15 1 5 0.80 4 1 1 0 1 0 1 0
.................................TAGTCGAGAGATTTGGGAGACT................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 1 0 0
..........................................................................TTAAGATGGGGGGAGATT.............................................................................................................................................................. 18 2 2 0.50 1 0 1 0 0 0 0 0
.....................................................................................................................................................................TGCGCGTTTGAATTTTA.................................................................... 17 1 4 0.25 1 0 0 1 0 0 0 0
.........................................................................CTTAAGATGGGGGGAGA................................................................................................................................................................ 17 2 12 0.25 3 0 2 0 1 0 0 0
.........................................................................................................................................AAAAGGGTTTGCGCCG................................................................................................. 16 1 4 0.25 1 0 0 1 0 0 0 0
.........TACTTTAGTCCGAGACGGTTT............................................................................................................................................................................................................................ 21 3 4 0.25 1 0 1 0 0 0 0 0
..........................................................................TTAAGATGGAGGGAG................................................................................................................................................................. 15 1 5 0.20 1 0 1 0 0 0 0 0
.........................................................................CTTAAGATGGGGGGA.................................................................................................................................................................. 15 1 5 0.20 1 0 1 0 0 0 0 0
.......................ACGGTTGAAATAGTTGAGAG............................................................................................................................................................................................................... 20 3 11 0.18 2 2 0 0 0 0 0 0
..........................................................................TTAAGATGGGGGTAG................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 1 0 0 0
......................................................................................................................................AAGAAAAGGGTTTGCG.................................................................................................... 16 1 6 0.17 1 0 0 1 0 0 0 0
..........GCTTTAGTCAGCGATGG............................................................................................................................................................................................................................... 17 2 8 0.13 1 0 0 0 1 0 0 0
.......................................................................ACCTTAAGATGGGGGGAG................................................................................................................................................................. 18 2 8 0.13 1 0 0 0 0 0 0 1
..........................................................................TTAAGATGGGGGGAGAG............................................................................................................................................................... 17 2 16 0.13 2 0 2 0 0 0 0 0
.........................................................................................................................................................................................................AGGCGAGCCCAGAAC.................................. 15 1 9 0.11 1 0 0 0 1 0 0 0
.............................TAAAAATTCGAGAGGCTT........................................................................................................................................................................................................... 18 2 10 0.10 1 1 0 0 0 0 0 0
..........................................................................TTAAGATGGGGGGAGAT............................................................................................................................................................... 17 2 11 0.09 1 0 1 0 0 0 0 0
.................................................................................GTGGGGAGTACAGGGA......................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0
...........................................ACTTGAGCAACTTTGTA.............................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0
............................................................................................................................................AGGGATTGCGACGGCA.............................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 04:21 AM