ID:

dsi_11224

 Coordinate:

3l:17204646-17204849 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.4 -25.4 -25.3

Flybase annnotation

exon [3l_17204850_17205001_-]; CDS [3l_17204850_17205001_-]; exon [3l_17204480_17204645_-]; CDS [3l_17204480_17204645_-]; intron [3l_17204646_17204849_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGAACTCCGTGAAACAGAAGGCCCTCCGGGTGCTCAAACAAAAGAAGGCGTAGGTTCAATGCCCCACCCAATGCCTAGTATCGATTATTTTCCATAACTCCAGTGTTACTTTGCTCCAGACATTTGGAATTATCATTTCCCAATCTACAGTTCCATTACCTTATGGAATTTACATCCACAATCAATTTCTTATTTTGGCCTGTTCTAAATGTGTATTCTAAACCATTTCTAACTTTATTTGTTTACTACACAGCTACGAACAGCAGGCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAAC
**************************************************.(((((.................)))))(((..((((.......((((.(((((((((...........)))).))))).))))........)))))))((((((((......)))))))).(((.(((.(((.........))).)))..)))......((((((...(((((.................))))).)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.........................................................................................................................................................................................ATTTCTTATTTTGGCCTG..................................................................................................... 18 0 1 2.00 2 0 2 0 0 0
.......................................CGAAAGTAGGCGTGGGTTCA..................................................................................................................................................................................................................................................... 20 3 4 1.75 7 7 0 0 0 0
.............................................................................................................................................................................................................................................................................AGAATCTCTGCGCAACCAGTC.............. 21 0 1 1.00 1 0 0 1 0 0
..........................................AAGTAGGCGTGGGTTCA..................................................................................................................................................................................................................................................... 17 2 11 0.73 8 8 0 0 0 0
.......................................CGAAAGAGGGCGTGGGTTCA..................................................................................................................................................................................................................................................... 20 3 5 0.40 2 0 0 0 2 0
.........................................AAAGTAGGCGTGGGTTCA..................................................................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0
......................................ACGAAAGTAGGCGTGGGTTC...................................................................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0
.........................................AAAGTAGGCGTGGGTTC...................................................................................................................................................................................................................................................... 17 2 11 0.09 1 1 0 0 0 0
.................................................................................................................................ATTAGCATATCCCAATCT............................................................................................................................................................. 18 2 13 0.08 1 0 0 0 0 1
...........................................AGTAGGCGTCGGTTCA..................................................................................................................................................................................................................................................... 16 2 16 0.06 1 1 0 0 0 0
..........................................................................................................ATACTTTGCTCCGGACA..................................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 1 0

Anti-sense strand reads

TTCTTGAGGCACTTTGTCTTCCGGGAGGCCCACGAGTTTGTTTTCTTCCGCATCCAAGTTACGGGGTGGGTTACGGATCATAGCTAATAAAAGGTATTGAGGTCACAATGAAACGAGGTCTGTAAACCTTAATAGTAAAGGGTTAGATGTCAAGGTAATGGAATACCTTAAATGTAGGTGTTAGTTAAAGAATAAAACCGGACAAGATTTACACATAAGATTTGGTAAAGATTGAAATAAACAAATGATGTGTCGATGCTTGTCGTCCGTCTTAGAGACGCGTTGGTCAGCAAGTTGTACCTTG
**************************************************.(((((.................)))))(((..((((.......((((.(((((((((...........)))).))))).))))........)))))))((((((((......)))))))).(((.(((.(((.........))).)))..)))......((((((...(((((.................))))).)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR1275487
Male larvae		 M025
embryo
 SRR902009
testis
.......................................................................................................................................................................TTAAAAGTAGGTGTTAGTTAAGT.................................................................................................................. 23 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TCTTAAAAGTAGGTGTTAGTTAT.................................................................................................................... 23 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0
.............................................................CGGGGTGGGCTAGGGATCA................................................................................................................................................................................................................................ 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TCTTAAAAGTAGGTGTTAGTTAAT................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TTCTTAAAAGTAGGTGTTAGTTAA.................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TCTTAAAAGTAGGTGTTAGTTAA.................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AGGTAATTGAATACCTT....................................................................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................CGGGGTGGGCTAGGGATC................................................................................................................................................................................................................................. 18 2 4 0.50 2 0 2 0 0 0 0 0 0 0 0
..............................................................GGGGTGGGCTAGGGATCA................................................................................................................................................................................................................................ 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................TTTTAAAAGTAGGTGTTAGTTAA.................................................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.............................................................CGTGGTGGGCTACGGATC................................................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................CAAAGGGTTAGCTGTCAA....................................................................................................................................................... 18 2 9 0.22 2 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GGTAAAGATTGAATT.................................................................. 15 1 19 0.21 4 0 0 0 0 0 1 3 0 0 0
..............................................................GGGGTGGGCTAGGGATC................................................................................................................................................................................................................................. 17 2 17 0.18 3 0 0 0 0 0 0 0 3 0 0
..........................................................TTTTGGGGTGGGTTAGGGATC................................................................................................................................................................................................................................. 21 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................GGTTAGTTCTCAAGGTAA.................................................................................................................................................. 18 2 13 0.15 2 0 0 0 0 0 0 0 0 2 0
.............................................................TGGGGTGGGCTAGGGATCA................................................................................................................................................................................................................................ 19 3 15 0.13 2 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................TAAATGTAGTTGTCAGTT...................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................CGTCTGTAAACCTCAATA.......................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................GTTAGTTCTCAAGGTAA.................................................................................................................................................. 17 2 20 0.10 2 1 0 0 0 0 0 1 0 0 0
....................................................TCCAAGTTCAGGGGCGGGTT........................................................................................................................................................................................................................................ 20 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0
............................................................TTGTGGTGGGTTACGGATCA................................................................................................................................................................................................................................ 20 3 12 0.08 1 0 0 0 0 0 0 0 1 0 0
....................................................................................TAATAAAAGGTATTGC............................................................................................................................................................................................................ 16 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................AAAAGTAGGTGTTAGTTAAGT.................................................................................................................. 21 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................TGCATGTCGTCAGTCTT............................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................CGTTGCCCAGCAAGTTG....... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
......................................................................TTGCGGATCATAGGTA.......................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................ATGAGACGAGGTATGAAAA.................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:17204596-17204899 - dsi_11224 AAGAACTCCGTGAAACAGAAGGCCCTCCGGGTGCTCAAACAAAAGAAGGCGTAGGT---TCAAT----GCCCCACCCAATGC----------CT-AGTATCGATTATTTTCCATAACTCCAGTGTTACTTTGCTCCAGACATT-------TG---------------------------G---------AATTATCAT----------------TTCCCAATCTAC--------------A--------------GTTCCA-----------------------------------------------TTAC------CTT-ATGGAATTTACATCCAC-AATCAATTT-CTTATTTTGGCCTGTTC-TAAATGTGTATTCTAAACCATTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTATTTGTTTAC-------------------TACACAGCTACGAACAGCAGGCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAAC
droSec2 scaffold_0:9660125-9660419 - AAGAACTCCGTGAAACAGAAGGCCCTGCGGGTGCTCAAACAAAAGAAGGCGTAGGT---TCAAT----GCCCCACCCAATGC----------CT-AGTATCGATTATTTTCCATAACTACAGTGTTACTATGCTCCAGACATT-------TG---------------------------G---------AAATATCAT----------------TACCAAATTTAT--------------A--------------GTTCCA-----------------------------------------------TTACCATTACCTT----------------AC-AATCAATTT-TTTATTGTGCCCTGTTC-TAAAAGTGTATTCTAAACCATTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTATTTGTTTAC-------------------TACAAAGCTACGAACAGCAGGCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAAC
dm3 chr3L:17613945-17614250 - AAGAACTCCGTGAAACAGAAGGCCCTCCGGGTTCTCAAACAAAAGAAGGCGTACGT---TCAAT----GCCCCACCCACTGC----------CT-AGTATCGATTATATTCCAAACCTCCAGTGTTACTCTTCTCCAGACATT-------TG---------------------------A---------AATTATCAT----------------TTCCTAATCTAT--------------A-----------A--GTTCCA-----------------------------------------------TTAC------CTT-ATGAAATTTACATCCAC-AATCAATTTTTTTATTGTGTCCTGTTC-TAAATGAGTATTTTAAACCATTTTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTATTTGTTTCC-------------------TACACAGCTACGAACAGCAGGCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAAC
droEre2 scaffold_4784:16239825-16240141 + AAGAACTCAGTGAAACAGAAGGCCCTCAGGGTGCTCAAACAAAAGAAGGCGTACGT---TTAAT----GCCCCACCCACTGC----------TTCAGTATTGATTCGTCTCCACAGCTCCATTGTCGCT-TGCTCTAGATTTTCACATTCTG---------------------------CACATACATAGATTTTCAT----------------TTGCTAATCTTT--------------G--------------TTTCCG-----------------------------------------------TTTC------C-T-ATGGAATTCACAGGAAC-AATCTATTT-CTTATTGTGCCCTCTTC-TAAAA--CTTGTTTAAACCACGTCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTATTTGTTTAC-------------------TACACAGCTACGAACAGCAGGCGGAATCTCTGCGCAACCAGTCGTTCAACATGGAAC
droYak3 3L:16441538-16441825 + AAGAACTCAGTGAAACAGAAGGCTCTCCGGGTGCTCAAACAAAAGAAGGCGTACGT---TCAGT----GCCCCACCCACTGC----------TTTAGTATTGATTCGTTTTCATAACTCAATTGCTGCTTTGCTCCAGAGTTTCATGTTCTG---------------------------G---------AAGTTTCAT----------------TTGCCTATCTTT--------------G--------------ATTCCT-----------------------------------------------TTAC------CTC-ATGGAATTTACATGCAC-GATCTAATT-CTTATTGT-------------------------AACCACCTTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTTTTGTTTAC-------------------TACCCAGCTACGAACAGCAGGCGGAATCTCTGCGCAACCAGTCGTTCAACATGGAAC
droEug1 scf7180000409471:1951165-1951595 + AAGAACTCTGTAAAGCAAAAGGCTCTTAGGGTGCTCAAACAAAAGAAGGCGTAGGT---TTAAG-----CCCCACCCAGGGT----------GCCCTTATTGATTCGTTATTAGACCTCAGTTTTCAC----------------------------------------------------------------------------------------------------------------A-----------C--CCTT--ATA---TTAATATCTTGGGATTTTTATTCTTCATCCTAACATCTTCATAAC------ATTTTTAAAATGTATATTCATTTACCAACCGTCATTTTCTTTCAAGTCCTTAAACGTGTATTTTATACTAATTC-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATAAGTCTAAATTTCACTATCACTATATTAAGATACTAAAACTTTA------------------------------------------CGAAA----ATATGTT-GTCTCC---------TTAACCAGCTTAGTTTAAA--TATCATTCTAAAAAGTAATGCTAAATATACTCCTTA-------------ACTT-A-TCGTTTAT---------------------TATAGCTACGAACAGCAGGCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAAC
droBia1 scf7180000302193:915080-915463 - AAGAACTCCGTGAAACAGAAGGCGCTCCGGGTGCTCAAACAAAAGAAGGCGTAGGT---CCAAG----ACCCCACCCTCTAT----------TTTCATATTGATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------ACA---TTACTA---------------------------------------------------------CGCTGGGGG-ATTTTACTT-----------------------------------------------------------------------------------------------------------------------TGATAACTTTAGCTCTATCAA---GAG---------------------------------------------------------------------------------ATATCCCCTTTTTAAAGATGGATTTTTTTTAATCCTGAATTTTA------------------AATGAAACTTTATTTGTATAGAGTAATTTGATCTGTTCTCAGTTCAAATCGTATCGAATTTATATATGTACCTCTTTTTAACTTGTTCATCCATCCCAACCTAAACGTATCATTAT--------------------------------AAAACATG---------------CCTAAAACGACTTCAACAACCTGCAGCTACGAACAGCAGGCGGAATCTCTGCGCAACCAGTCGTTCAACATGGAGC
droTak1 scf7180000415409:378158-378495 - AAGAATTCTGTGAAACAAAAGGCCCTTCGGGTGCTCAAACAAAAGAAGGCGTAGGT---TTAAG----ACCCCACCCTCTCT----------TTTTAT---TATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------ACA------------------------------------------------------------------------------------------------------------------------------TTCATCCCTGCTAATTCTCCCCAAAAATTAGAAACTTCACTTGT----------------------------------TGA-AACTAAAGATCA---AA---TTAATGTTCCCTTTTTCCAAATTGATTTTCATCCAAT----CCT-----------------ATTAACATTATCGA-----ATTAACATTCCCTTTTCCAACCT-------------------------------------------------------------------------------------------------------------------------------GTTAATT-----CTATCTAGAATTTCCTTTAT--------------------------------AAAACATA---------------CCTAAACTGATTTTATTATCCTTTAGCTACGAACAGCAGGCGGAATCTCTGCGCAACCAGTCGTTCAACATGGAAC
droEle1 scf7180000490993:538826-539223 - AAGAATTCTGTTAAACAAAAGGCCCTCCGGGTGCTCAAACAAAAGAAAGCGTAGGT---TCAAA----ACCCCACCCACTGA----------TT-TATATTGATTCACTGCCATAACTCA-CTGCTTAATTGCCATAAAT--T-------TGTTTTTTATTTCTTTAAACAACTTTATCG---------AATTATCCAACTGGATATAAATGTGTTCCCAATCTAGACTCTTGACTCCACAAAGCTTATATCCTCCC----ATACCTCTCATACATTGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------ATCATCTTTAACAA-----ATTTGTATACCCATTTACAATTTGGATTTT----------------------------------------------------------------------------------------------------------------------------ATC-----CCATCCTGTACTTCTATTTA------------------AAAACCACAACCTC--------ACTTGATTTGTCAATCC----------------TAATATAGCTACGAACAGCAGGCGGAATCTCTGCGCAACCAGTCGTTTAACATGGAAC
droRho1 scf7180000778631:376-617 - AAGAATTCCGTAAAACAAAAGGCACTCCGGGTGCTCAAACAAAAGAAAGCGTAGGT---TCAAG----ACCCCACCCTCTGG----------TTTCATATTGATTCGCTGCCATGATTTCCTTTTTAT----------------------------------------------------------------------------------------------------------------A-----------C--TCTCTT-----------------------------------------------ATAC------CAT-CTGAATTTCACTTGGAT-ATTTTATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------ATTAACTTTATCGAAA-ATACTAGTATACCATTTTTTAAATCAATTTTATTTTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGATTTGTTTA--------------------------------------------------------TCAAATATTTCTAACTAGATT
droFic1 scf7180000454107:1193426-1193526 - TTTAAATTACGTATGCAAACCATTCTGTGACTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTAA------------------TCCTTTAGCTACGAACAGCAGGCGGAATCTCTTCGCAACCAGTCGTTCAACATGGAAC
droKik1 scf7180000302351:286497-286814 + AAGAACTCCGTGAAACAGAAGGCGTTGCGGGTGCTGAAACAAAAGAAGGCGTAAGTGTTTTGGG----GCCACGCCCTCGTA----------T---------ATTTGTTATTTGAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGGA-----------------AACATCTTAATAAT------AG---------------G-------------------------GA-------------------------------------------------------------TTCC------CCTTTACTTATTATTGGATTTTCGGACTTTGTTTTGTTATTTTTTGGTCAATTAACTTGAT-----------------------ATTTCTCGAATTTTACCTATAAAATTATGGATTTTCTTAAATATATTGAAACATACACATATATTATATTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTG--------C------------------TTTTATAGCTACGAACAGCAGGCGGAATCTCTGCGCAATCAGTCGTTTAACATGGAAC
droAna3 scaffold_13337:14316263-14316362 - AAAAACTCTGTGAAACAAAAGGCCCTTCGGGTTTTGAAACAAAAGAAAGCGTAAGT---CAAAG----ACCCCT--TAACG-CACCCCCTCCCT----CTTAATAATGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
droBip1 scf7180000396641:970865-970964 + AAAAACTCAGTGAAACAAAAGGCCCTTAGGGTTTTGAAACAAAAGAAAGCGTAAGT---CAAAG----ACCTCT--TAGCG-CACCCCCTCCCT----ATCAATAATGTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT
dp5 XR_group6:2281013-2281076 - TGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-------------------CCCACAGCTACGAACAGCAGTCCGAATCTCTGCGCAACCAGTCGTTCAACATGGAGC
droPer2 scaffold_9:571544-571607 - TGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-------------------CCCACAGCTACGAACAGCAGTCCGAATCTCTGCGCAACCAGTCGTTCAACATGGAGC
droWil2 scf2_1100000004762:1439512-1439572 - AAGAACTCTGTAAAGCAAAAGGCATTACGGGTGCTCAAACAAAAGAAAGCGTAAGC---GTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:6837271-6837369 + AAAAACTCAGTCAAACAAAGGGCGCTGCGTGTGCTCAAACAAAAGAAGGCGTAACT---GTTATCAATACC-AAGCCAGGGC----------CA-AATATTTATTGCGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT
droMoj3 scaffold_6680:5154725-5154798 + CATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGCTTAT-------------------------TTTAGCTATGAGCAACAAGCTGAATCTCTACGCAATCAATCCTTCAATATGGAAC
droGri2 scaffold_15110:5971657-5971765 - AAGAACTCAGTTAAACAAAGAGCGCTGCGTGTGCTTAAGCAAAAGAAGGCGTAATT---TAT-T----GT-CTATCAAATGA----------AA-GGGTTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAC-TAACTATTA-CTTATTAT---T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAGAACTCCGTGAAACAGAAGGCCCTCCGGGTGCTCAAACAAAAGAAGGCGTAGGT---TCAAT----GCCCCACCCAATGC----------CT-AGTATCGATTATTTTCCATAACTCCAGTGTTACTTTGCTCCAGACATT-------TG---------------------------G---------AATTATCAT----------------TTCCCAATCTAC--------------A--------------GTTCCA-----------------------------------------------TTAC------CTT-ATGGAATTTACATCCAC-AATCAATTT-CTTATTTTGGCCTGTTC-TAAATGTGTATTCTAAACCATTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTATTTGTTTAC-------------------TACACAGCTACGAACAGCAGGCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................ATTT-CTTATTTTGGCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCTCTGCGCAACCAGTC..............2111.00100100000000000000
droSec2
AAGAACTCCGTGAAACAGAAGGCCCTGCGGGTGCTCAAACAAAAGAAGGCGTAGGT---TCAAT----GCCCCACCCAATGC----------CT-AGTATCGATTATTTTCCATAACTACAGTGTTACTATGCTCCAGACATT-------TG---------------------------G---------AAATATCAT----------------TACCAAATTTAT--------------A--------------GTTCCA-----------------------------------------------TTACCATTACCTT----------------AC-AATCAATTT-TTTATTGTGCCCTGTTC-TAAAAGTGTATTCTAAACCATTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTATTTGTTTAC-------------------TACAAAGCTACGAACAGCAGGCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................CTGCGGGTGCTCAAACAAAAGAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGAACAGCAGGCAGAATCTCTGCGC......................2811.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGAACAGCAGGCAGAATCTCT..........................2411.0010100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAACAGCAGGCAGAATCTCTGCGC......................2711.0010010
dm3
AAGAACTCCGTGAAACAGAAGGCCCTCCGGGTTCTCAAACAAAAGAAGGCGTACGT---TCAAT----GCCCCACCCACTGC----------CT-AGTATCGATTATATTCCAAACCTCCAGTGTTACTCTTCTCCAGACATT-------TG---------------------------A---------AATTATCAT----------------TTCCTAATCTAT--------------A-----------A--GTTCCA-----------------------------------------------TTAC------CTT-ATGAAATTTACATCCAC-AATCAATTTTTTTATTGTGTCCTGTTC-TAAATGAGTATTTTAAACCATTTTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTATTTGTTTCC-------------------TACACAGCTACGAACAGCAGGCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCTCTGCGCAACCAGT...............2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAACAGCAGGCAGAATCTCTGCGCA.....................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCCCTCCGGGTTCTCAAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGAACAGCAGGCAGAATCTCTGCGC......................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCAACCAGTCGTTCA.........1812.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCCGGGTTCTCAAACAAAAGAAGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAATCTCTGCGCAACCAGTCGTTC..........2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TACTCTTCTCCAGACATT-------TG---------------------------A---------AATTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGCAGAATCTCTGCGCAACCA.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCTGCGCAACCAGTCGTTC..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTGCGCAACCAGTC..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCAACCAGTCGTTCAACATG....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTACGAACAGCAGGC...................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGCAACCAGTCGTTCAACAT.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ACAGAAGGCCCTCCGGGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.............................GGTTCTCAAACAAAAGAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGCAACCAGTCGTTCAACATGGAA.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGAAACAGAAGGCCCTCCGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................CTCCGGGTTCTCAAACAAAAGAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCTCTGCGCAACCAGTCGTTC..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGCAGAATCTCTGCGC......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
......................CCCTCCGGGTTCTCAAACAAAAGAAGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAATCTCTGCGCAACCAGTCGT............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....ACTCCGTGAAACAGAAGGCCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TTTTAAACCATTTTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG........................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
droEre2
AAGAACTCAGTGAAACAGAAGGCCCTCAGGGTGCTCAAACAAAAGAAGGCGTACGT---TTAAT----GCCCCACCCACTGC----------TTCAGTATTGATTCGTCTCCACAGCTCCATTGTCGCT-TGCTCTAGATTTTCACATTCTG---------------------------CACATACATAGATTTTCAT----------------TTGCTAATCTTT--------------G--------------TTTCCG-----------------------------------------------TTTC------C-T-ATGGAATTCACAGGAAC-AATCTATTT-CTTATTGTGCCCTCTTC-TAAAA--CTTGTTTAAACCACGTCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTATTTGTTTAC-------------------TACACAGCTACGAACAGCAGGCGGAATCTCTGCGCAACCAGTCGTTCAACATGGAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGAATCTCTGCGCAACCAGT...............2411.0011000000
..............................GTGCTCAAACAAAAGAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACAGCAGGCGGAATCTC...........................2011.0010000100
..........................CAGGGTGCTCAAACAAAAGAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
droYak3
AAGAACTCAGTGAAACAGAAGGCTCTCCGGGTGCTCAAACAAAAGAAGGCGTACGT---TCAGT----GCCCCACCCACTGC----------TTTAGTATTGATTCGTTTTCATAACTCAATTGCTGCTTTGCTCCAGAGTTTCATGTTCTG---------------------------G---------AAGTTTCAT----------------TTGCCTATCTTT--------------G--------------ATTCCT-----------------------------------------------TTAC------CTC-ATGGAATTTACATGCAC-GATCTAATT-CTTATTGT-------------------------AACCACCTTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTTTTGTTTAC-------------------TACCCAGCTACGAACAGCAGGCGGAATCTCTGCGCAACCAGTCGTTCAACATGGAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................CTCTCCGGGTGCTCAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.0010000000000010
........AGTGAAACAGAAGGCTCTCCGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
....ACTCAGTGAAACAGAAGGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCTCTGCGCAACCAGTCGTT...........2411.00110000000000
...............CAGAAGGCTCTCCGGGTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.................GAAGGCTCTCCGGGTGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
............AAACAGAAGGCTCTCCGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
droEug1
AAGAACTCTGTAAAGCAAAAGGCTCTTAGGGTGCTCAAACAAAAGAAGGCGTAGGT---TTAAG-----CCCCACCCAGGGT----------GCCCTTATTGATTCGTTATTAGACCTCAGTTTTCAC----------------------------------------------------------------------------------------------------------------A-----------C--CCTT--ATA---TTAATATCTTGGGATTTTTATTCTTCATCCTAACATCTTCATAAC------ATTTTTAAAATGTATATTCATTTACCAACCGTCATTTTCTTTCAAGTCCTTAAACGTGTATTTTATACTAATTC-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATAAGTCTAAATTTCACTATCACTATATTAAGATACTAAAACTTTA------------------------------------------CGAAA----ATATGTT-GTCTCC---------TTAACCAGCTTAGTTTAAA--TATCATTCTAAAAAGTAATGCTAAATATACTCCTTA-------------ACTT-A-TCGTTTAT---------------------TATAGCTACGAACAGCAGGCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACSizeHit CountTotal NormTotal
No Reads
droBia1
AAGAACTCCGTGAAACAGAAGGCGCTCCGGGTGCTCAAACAAAAGAAGGCGTAGGT---CCAAG----ACCCCACCCTCTAT----------TTTCATATTGATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------ACA---TTACTA---------------------------------------------------------CGCTGGGGG-ATTTTACTT-----------------------------------------------------------------------------------------------------------------------TGATAACTTTAGCTCTATCAA---GAG---------------------------------------------------------------------------------ATATCCCCTTTTTAAAGATGGATTTTTTTTAATCCTGAATTTTA------------------AATGAAACTTTATTTGTATAGAGTAATTTGATCTGTTCTCAGTTCAAATCGTATCGAATTTATATATGTACCTCTTTTTAACTTGTTCATCCATCCCAACCTAAACGTATCATTAT--------------------------------AAAACATG---------------CCTAAAACGACTTCAACAACCTGCAGCTACGAACAGCAGGCGGAATCTCTGCGCAACCAGTCGTTCAACATGGAGCSizeHit CountTotal NormTotal
No Reads
droTak1
AAGAATTCTGTGAAACAAAAGGCCCTTCGGGTGCTCAAACAAAAGAAGGCGTAGGT---TTAAG----ACCCCACCCTCTCT----------TTTTAT---TATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------ACA------------------------------------------------------------------------------------------------------------------------------TTCATCCCTGCTAATTCTCCCCAAAAATTAGAAACTTCACTTGT----------------------------------TGA-AACTAAAGATCA---AA---TTAATGTTCCCTTTTTCCAAATTGATTTTCATCCAAT----CCT-----------------ATTAACATTATCGA-----ATTAACATTCCCTTTTCCAACCT-------------------------------------------------------------------------------------------------------------------------------GTTAATT-----CTATCTAGAATTTCCTTTAT--------------------------------AAAACATA---------------CCTAAACTGATTTTATTATCCTTTAGCTACGAACAGCAGGCGGAATCTCTGCGCAACCAGTCGTTCAACATGGAACSizeHit CountTotal NormTotal
No Reads
droEle1
AAGAATTCTGTTAAACAAAAGGCCCTCCGGGTGCTCAAACAAAAGAAAGCGTAGGT---TCAAA----ACCCCACCCACTGA----------TT-TATATTGATTCACTGCCATAACTCA-CTGCTTAATTGCCATAAAT--T-------TGTTTTTTATTTCTTTAAACAACTTTATCG---------AATTATCCAACTGGATATAAATGTGTTCCCAATCTAGACTCTTGACTCCACAAAGCTTATATCCTCCC----ATACCTCTCATACATTGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------ATCATCTTTAACAA-----ATTTGTATACCCATTTACAATTTGGATTTT----------------------------------------------------------------------------------------------------------------------------ATC-----CCATCCTGTACTTCTATTTA------------------AAAACCACAACCTC--------ACTTGATTTGTCAATCC----------------TAATATAGCTACGAACAGCAGGCGGAATCTCTGCGCAACCAGTCGTTTAACATGGAACSizeHit CountTotal NormTotal
No Reads
droRho1
AAGAATTCCGTAAAACAAAAGGCACTCCGGGTGCTCAAACAAAAGAAAGCGTAGGT---TCAAG----ACCCCACCCTCTGG----------TTTCATATTGATTCGCTGCCATGATTTCCTTTTTAT----------------------------------------------------------------------------------------------------------------A-----------C--TCTCTT-----------------------------------------------ATAC------CAT-CTGAATTTCACTTGGAT-ATTTTATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------ATTAACTTTATCGAAA-ATACTAGTATACCATTTTTTAAATCAATTTTATTTTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGATTTGTTTA--------------------------------------------------------TCAAATATTTCTAACTAGATTSizeHit CountTotal NormTotal
No Reads
droFic1
TTTAAATTACGTATGCAAACCATTCTGTGACTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTAA------------------TCCTTTAGCTACGAACAGCAGGCGGAATCTCTTCGCAACCAGTCGTTCAACATGGAACSizeHit CountTotal NormTotal
No Reads
droKik1
AAGAACTCCGTGAAACAGAAGGCGTTGCGGGTGCTGAAACAAAAGAAGGCGTAAGTGTTTTGGG----GCCACGCCCTCGTA----------T---------ATTTGTTATTTGAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGGA-----------------AACATCTTAATAAT------AG---------------G-------------------------GA-------------------------------------------------------------TTCC------CCTTTACTTATTATTGGATTTTCGGACTTTGTTTTGTTATTTTTTGGTCAATTAACTTGAT-----------------------ATTTCTCGAATTTTACCTATAAAATTATGGATTTTCTTAAATATATTGAAACATACACATATATTATATTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTG--------C------------------TTTTATAGCTACGAACAGCAGGCGGAATCTCTGCGCAATCAGTCGTTTAACATGGAACSizeHit CountTotal NormTotal
No Reads
droAna3
AAAAACTCTGTGAAACAAAAGGCCCTTCGGGTTTTGAAACAAAAGAAAGCGTAAGT---CAAAG----ACCCCT--TAACG-CACCCCCTCCCT----CTTAATAATGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....CTCTGTGAAACAAAAGGCCCTTCGGGTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
droBip1
AAAAACTCAGTGAAACAAAAGGCCCTTAGGGTTTTGAAACAAAAGAAAGCGTAAGT---CAAAG----ACCTCT--TAGCG-CACCCCCTCCCT----ATCAATAATGTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
dp5
TGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-------------------CCCACAGCTACGAACAGCAGTCCGAATCTCTGCGCAACCAGTCGTTCAACATGGAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAATCTCTGCGCAACCAGT...............2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAACCAGTCGTTCAACATGG...2311.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAATCTCTGCGCAACCAGTCGT............2611.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTGCGCAACCAGTCGTTCAACATG....2811.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAATCTCTGCGCAACCAGTCGTC...........2711.0010010000000
droPer2
TGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-------------------CCCACAGCTACGAACAGCAGTCCGAATCTCTGCGCAACCAGTCGTTCAACATGGAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAATCTCTGCGCAACC..................2012.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGTCCGAATCTCTGCGC......................2211.001010000
droWil2
AAGAACTCTGTAAAGCAAAAGGCATTACGGGTGCTCAAACAAAAGAAAGCGTAAGC---GTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..GAACTCTGTAAAGCAAAAGGCATTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00220000
..............GCAAAAGGCATTACGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
...........AAAGCAAAAGGCATTACGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.........GTAAAGCAAAAGGCATTACGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
.......................ATTACGGGTGCTCAAACAAAAGAAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
.............AGCAAAAGGCATTACGGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
droVir3
AAAAACTCAGTCAAACAAAGGGCGCTGCGTGTGCTCAAACAAAAGAAGGCGTAACT---GTTATCAATACC-AAGCCAGGGC----------CA-AATATTTATTGCGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................AAAGGGCGCTGCGTGTGCTCAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000000000000000100000010000000000000000000000000000000000000000
..................AGGGCGCTGCGTGTGCTCAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000002
................AAAGGGCGCTGCGTGTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002001000010000000000000000000000000000000000000000000000000000000
...............CAAAGGGCGCTGCGTGTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
...AACTCAGTCAAACAAAGGGCGCTGCGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
............AAACAAAGGGCGCTGCGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
............AAACAAAGGGCGCTGCGTGTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
.......................GCTGCGTGTGCTCAAACAAAAGAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
CATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGCTTAT-------------------------TTTAGCTATGAGCAACAAGCTGAATCTCTACGCAATCAATCCTTCAATATGGAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGCTGAATCTCTACGC......................2011.001100000
droGri2
AAGAACTCAGTTAAACAAAGAGCGCTGCGTGTGCTTAAGCAAAAGAAGGCGTAATT---TAT-T----GT-CTATCAAATGA----------AA-GGGTTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAC-TAACTATTA-CTTATTAT---T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:29 AM