ID:

dsi_11204

Coordinate:

3l:7718745-7718813 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7718394_7718744_-]; CDS [3l_7718394_7718744_-]; CDS [3l_7718814_7718945_-]; exon [3l_7718814_7718945_-]; intron [3l_7718745_7718813_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------################################################## ATACCATACAGAATGGCTATGCCAATGAGATGGACTATCTGTTTGGCGACGTAAGTAGATCACTATTAAATTGTTTACCAGCTGACACTAACATTGAATTATTTTTGATCTTACTTTAGTATTTGGATAGCATCACGAATACACCGAACACAGATCGTCGGGATTCCTT ************************************************..((((((((((....(((..((((..............)))).....)))....))))).)))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M024 male body	SRR553488 RT_0-2 hours eggs
.........................TGAGATGGACTATCTGTTTGGCGACTAT....................................................................................................................	28	3	1	1.00	1	1	0	0	0	0	0
............................GATGGACTATCTGTTTGGC..........................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0
.......ACAGAATGGCTATGCCAATGAGATGGA.......................................................................................................................................	27	0	1	1.00	1	0	0	1	0	0	0
...............................................................................................................TACTTTAGTATTTGGATAG.......................................	19	0	1	1.00	1	0	0	0	1	0	0
...........................................................TCACTTTTAACTTGTTCACCAG........................................................................................	22	3	2	0.50	1	1	0	0	0	0	0
.......................................................................................................TTTGATCTTACTTGTGTA................................................	18	2	14	0.43	6	4	0	0	0	0	2
...........................AGAGGGACTATCTGTTTC............................................................................................................................	18	2	4	0.25	1	0	0	0	0	1	0
................................................ATGGAGGTAGATCACTATT......................................................................................................	19	3	12	0.08	1	0	0	0	0	1	0
...........................................................................................CATTTAATTATTTTTGA.............................................................	17	1	20	0.05	1	1	0	0	0	0	0

Anti-sense strand reads

TATGGTATGTCTTACCGATACGGTTACTCTACCTGATAGACAAACCGCTGCATTCATCTAGTGATAATTTAACAAATGGTCGACTGTGATTGTAACTTAATAAAAACTAGAATGAAATCATAAACCTATCGTAGTGCTTATGTGGCTTGTGTCTAGCAGCCCTAAGGAA ************************************************..((((((((((....(((..((((..............)))).....)))....))))).)))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553486 Makindu_3 day-old ovaries
.............................................................................................................................................CTGGCTGATGTCTAGCAGCC........	20	3	2	1.00	2	2	0	0	0	0
...........................................................................ATGGGCGACTGTGATT..............................................................................	16	1	3	0.33	1	0	1	0	0	0
.......................................ACAAACCGATGCATTGAT................................................................................................................	18	2	3	0.33	1	0	1	0	0	0
...............................................................................................................................................GGTTTGTGCCTAGCAGCCTT......	20	3	4	0.25	1	0	0	1	0	0
.............................................................................................................................................CTGGCTGATGTCTAGCAGC.........	19	3	15	0.07	1	0	0	0	1	0
............................................................................................................AGAGTGAACTCATAAAC............................................	17	2	20	0.05	1	0	0	0	0	1

Generated: 04/24/2015 at 10:27 AM