ID:

dsi_11202

Coordinate:

3r:4198306-4198455 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-34.7	-34.7	-34.6

Flybase annnotation

CDS [3r_4198172_4198305_-]; exon [3r_4198172_4198305_-]; intron [3r_4198306_4198612_-]; Antisense to intron [3r_4197814_4201350_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATTAAGTCTATATTACAACCCATTGAAGCTCATATGAGTCACCTAGTATGTTGTTGGGATCGGTTTTATCTCACTCAGAATAAGTAATGTATGCTTTAAAGTCTGCGACAACTAACCAAATTCACTGTCGAGTGGCAGCCACCTGCTGCTCCGTCTAATGCCACTAATCAGGCTAATCTATGAACTCTGATCCGCCGCAGCTGTTCGTGCTCGCCGCCTTTGCCGCCTCCCAGGCTATCGCCCATCCCGG ************************************************.(((..(((((((.(((((......((((..(((((.....))))).....))))(((((...............)))))((((((((....)))))))).........(((........)))......)))))..)))))))...))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	M023 head	SRR553488 RT_0-2 hours eggs	M024 male body	SRR902009 testis
..................................................................................................................................................TGCTCCGTCTAATGCCAC......................................................................................	18	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................CAGCTGTTCGAGCTCGCC...................................	18	1	2	0.50	1	0	1	0	0	0
................................................................TTTATCTCCCTCAGA...........................................................................................................................................................................	15	1	7	0.29	2	0	0	2	0	0
...............................................................................................TTAAAGGCTGCGACAACC.........................................................................................................................................	18	2	6	0.17	1	0	0	0	1	0
.............................................GTTTGTTGGTGGAATCGGTTT........................................................................................................................................................................................	21	3	10	0.10	1	0	0	0	0	1

Anti-sense strand reads

TAATTCAGATATAATGTTGGGTAACTTCGAGTATACTCAGTGGATCATACAACAACCCTAGCCAAAATAGAGTGAGTCTTATTCATTACATACGAAATTTCAGACGCTGTTGATTGGTTTAAGTGACAGCTCACCGTCGGTGGACGACGAGGCAGATTACGGTGATTAGTCCGATTAGATACTTGAGACTAGGCGGCGTCGACAAGCACGAGCGGCGGAAACGGCGGAGGGTCCGATAGCGGGTAGGGCC ************************************************.(((..(((((((.(((((......((((..(((((.....))))).....))))(((((...............)))))((((((((....)))))))).........(((........)))......)))))..)))))))...))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
..................................................................................TCATTACATACGAAATTTCAGACGCT..............................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................AAACGGCGGAGGGGCC................	16	1	1	1.00	1	1	0	0	0	0
........................................................................................................................................................CAGATTACGTTGATT...................................................................................	15	1	13	0.23	3	0	0	0	3	0
..........................................................................................TACGAAGTTTCAGAGGGTG.............................................................................................................................................	19	3	20	0.20	4	0	0	4	0	0
...................................................................................................................................................................................................................................AGGGTCCGCTAGTGGGTA.....	18	2	6	0.17	1	1	0	0	0	0
..................................................................................................................................TCAACGTCGGTGGAC.........................................................................................................	15	1	20	0.15	3	0	1	2	0	0
..................................................................................................................................TCAACGTCGGTGGACCA.......................................................................................................	17	2	20	0.10	2	0	0	2	0	0
............................................................................................................................................................................................................AGCAGGAGCGGCGGCAAGGGC.........................	21	3	11	0.09	1	1	0	0	0	0
.......................................................................................................................................................................................................................................TCCGAAAGCGGGTAACGCC	19	3	15	0.07	1	0	0	0	0	1
.....................................................................................................................TTTAAGTGTCAGGTCAC....................................................................................................................	17	2	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................CCAGATTACGTTGATT...................................................................................	16	2	20	0.05	1	0	0	0	1	0
........................................................................................................................................TCGATGGATGACGAGGTAG...............................................................................................	19	3	20	0.05	1	0	0	0	0	1
...................................................................................................................................................................................................................................AGGGTCCCCCAGCGGGTAG....	19	3	20	0.05	1	0	1	0	0	0

Generated: 04/23/2015 at 10:47 PM