ID:

dsi_11195

 Coordinate:

3r:17181770-17181919 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCCCACGTTTGCAACTACAAAGAGAATACATAGTTGATTAAATTTTCTCTTTCTTAAGAATCTTGTTTGCTTTTAGACGCTCGGAAAATATAAATATTTTGCTTTTGTCGAAGCAAGATAAAATTTTATTCGCTCCCATTTAGACACAATCAACTTTCAATTGAAGTTTAATCCGAATTTATTTTCCCCCCTTCTTACAGAGGACCTTTCTCCATCGTAAGGCGATGCATACACAGGGAGTCCAATCAGC
**************************************************....((((((...((((((....))))))...((((((((....(((((((((((....))))))))))).......(((((.......((((((.((((.........))))..))))))..))))).))))))))....))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................................................CCCCCCTTCTTACAGAGGAC............................................. 20 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................................................GTCGTAAGACGATGTATA................... 18 3 20 0.10 2 0 1 0 1
................................................................................TCGGAAGAAATAAATATTTT...................................................................................................................................................... 20 2 11 0.09 1 0 0 1 0
......................................AAACTTTTATCTTTCTTAAGA............................................................................................................................................................................................... 21 3 14 0.07 1 0 1 0 0

Anti-sense strand reads

GGGGTGCAAACGTTGATGTTTCTCTTATGTATCAACTAATTTAAAAGAGAAAGAATTCTTAGAACAAACGAAAATCTGCGAGCCTTTTATATTTATAAAACGAAAACAGCTTCGTTCTATTTTAAAATAAGCGAGGGTAAATCTGTGTTAGTTGAAAGTTAACTTCAAATTAGGCTTAAATAAAAGGGGGGAAGAATGTCTCCTGGAAAGAGGTAGCATTCCGCTACGTATGTGTCCCTCAGGTTAGTCG
**************************************************....((((((...((((((....))))))...((((((((....(((((((((((....))))))))))).......(((((.......((((((.((((.........))))..))))))..))))).))))))))....))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
......................................................................................................................ATTTTAGAATAACCGAGGGT................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................CTGTGTCCCTCAGGTTAGT.. 19 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................ACAAGGTCTCCTTGAAAGAGG..................................... 21 3 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................TGTGTCCCTCAGGTT..... 15 0 9 0.44 4 0 0 3 0 1 0
.......................................................................................................................................................................................................................GCATTCCGCTACGTTT................... 16 1 3 0.33 1 0 1 0 0 0 0
........................................TTAAAAGAGAAAGAA................................................................................................................................................................................................... 15 0 4 0.25 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................GAGCATTCCGCTACGTTT................... 18 2 5 0.20 1 0 1 0 0 0 0
..................................................................................................................................................................CTTCAAATAAGGCTTATA...................................................................... 18 2 6 0.17 1 0 0 0 1 0 0
................................................................................................................................................................AGCTTCAAATTAGGC........................................................................... 15 1 9 0.11 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................TGGGTGTCCCTCAGGTTCGT.. 20 3 12 0.08 1 0 0 0 0 0 1
...........................................................................................................AGCTTGGTTCTATTT................................................................................................................................ 15 1 13 0.08 1 0 1 0 0 0 0
.......................................TTTCAAAGAGAAAGA.................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0

Generated: 04/23/2015 at 02:34 PM