ID:dsi_1117 |
Coordinate:3r:4664630-4664695 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
CDS [3r_4664555_4664629_+]; exon [3r_4664448_4664629_+]; CDS [3r_4664696_4665450_+]; exon [3r_4664696_4665450_+]; intron [3r_4664630_4664695_+]
No Repeatable elements found
| ##################################################------------------------------------------------------------------################################################## CAAAGAAACCTCTGAACACCATCGATGAGAACGCGACCATGAAAGTACCGGTAAGTGGACATACTTACCATTCGGAATTTGGAACTCCATTTACTTGAACAAAATCTGTATTTCAGCGCCTGGCGGAGACGACCACAAATATATCAGTTGAGTCATCATCTGGTGG **************************************************(((((((((........((....))..........)))))))))......................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | O001 Testis |
GSM343915 embryo |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................GCGACCATGAAAGTACCG.................................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .....AAACCTCTGAACACCATC............................................................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .................ATCATCGGTGAGAACGC.................................................................................................................................... | 17 | 2 | 9 | 0.11 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................GAACGCGGCCATGAA........................................................................................................................... | 15 | 1 | 9 | 0.11 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..................................................GTGTGTGGACGTACTTACC................................................................................................. | 19 | 3 | 19 | 0.11 | 2 | 0 | 0 | 0 | 0 | 2 | 0 |
| ..........................................AAGTACCGGGAAGTTGA........................................................................................................... | 17 | 2 | 10 | 0.10 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...................................ATCATGACAGTACCGG................................................................................................................... | 16 | 2 | 19 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................................................................................................TCAGGGCCAGGCGGAGA..................................... | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
|
GTTTCTTTGGAGACTTGTGGTAGCTACTCTTGCGCTGGTACTTTCATGGCCATTCACCTGTATGAATGGTAAGCCTTAAACCTTGAGGTAAATGAACTTGTTTTAGACATAAAGTCGCGGACCGCCTCTGCTGGTGTTTATATAGTCAACTCAGTAGTAGACCACC
**************************************************(((((((((........((....))..........)))))))))......................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|
| ......................................................................................................................GGACCACCGCTGCAGGTGTTT........................... | 21 | 3 | 1 | 1.00 | 1 | 1 | 0 |
| ................................................................................CCGTGAGGTAAAAGAACATG.................................................................. | 20 | 3 | 13 | 0.08 | 1 | 0 | 1 |
| .TTTCTTTGGAGAGTTCT.................................................................................................................................................... | 17 | 2 | 20 | 0.05 | 1 | 0 | 1 |
Generated: 04/24/2015 at 10:21 AM