dsi_11160

CGTTTTGCTGCTGATGCAAGCGGCTTGAGGAGGATCTGATAACCCTACACCTCGCTAATGGGGACCACAGACCGCAGGGGAGGTCGTTGCCTAGCCAGAAAAGCGAAAACGCGTAAACATGTTTGTGCACCGAACAACCAGCCCAGCCCACACAATCGCCATCGCCCACTGACTGATCTCGTCTTTCATTTGCATTTCAGTTGCCAAGCGGTTCAGACGCAGTCAGCAATCAGAGAAACCAGACATCAAC *******************************************************..((.(((....((((........))))))).))................*********************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	M023 head	M053 female body	O002 Head	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR902009 testis	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs
.........................................................................................................................................................................................................TGCCAAGCGGTTCAGACGCATTCAGC.......................	26	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................ATTTCAGTTGCCAAGCGGTTCAGA.................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................AGTTGCCAAGCGGTTCAGA.................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................ATGGGGACCACAGACCG................................................................................................................................................................................	17	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTCAGACGCAGTCAGCAATCAGAGA..............	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................TGCCTAGCCAGAAAAGCGAA...............................................................................................................................................	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.........................................................................GCAGGGTAGGACGTTGCC...............................................................................................................................................................	18	2	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
............................................................GGGATCAAAGAGCGCAGGGG..........................................................................................................................................................................	20	3	5	0.40	2	0	0	0	0	0	0	0	2	0	0	0
.........................................................................GCGTGGGAGGTCGTTGC................................................................................................................................................................	17	2	18	0.11	2	2	0	0	0	0	0	0	0	0	0	0
...........................................................................AGAGTAGGTCGTTGCC...............................................................................................................................................................	16	2	18	0.11	2	0	0	0	0	0	0	0	0	2	0	0
........................................................................TGCAGGGTAGGACGTTGCC...............................................................................................................................................................	19	3	11	0.09	1	0	0	0	0	0	0	1	0	0	0	0
........TGTTGATGCACGCGTCTTG...............................................................................................................................................................................................................................	19	3	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0
..............................................................................GTAGGTCGTTGCCTGGCCT.........................................................................................................................................................	19	3	17	0.06	1	0	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................CCCACTGACTGATCC.......................................................................	15	1	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CATTTCTGTTGCCAA...........................................	15	1	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0
..............................................................GACCACATAGCGCAGTGGA.........................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
..................................................................................GTCGGTACCTAACCAGAA......................................................................................................................................................	18	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................CAAGGGGAGGACGTTGCC...............................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

GCAAAACGACGACTACGTTCGCCGAACTCCTCCTAGACTATTGGGATGTGGAGCGATTACCCCTGGTGTCTGGCGTCCCCTCCAGCAACGGATCGGTCTTTTCGCTTTTGCGCATTTGTACAAACACGTGGCTTGTTGGTCGGGTCGGGTGTGTTAGCGGTAGCGGGTGACTGACTAGAGCAGAAAGTAAACGTAAAGTCAACGGTTCGCCAAGTCTGCGTCAGTCGTTAGTCTCTTTGGTCTGTAGTTG *********************************************************************************************************************************************..((.(((....((((........))))))).))................*******************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	M024 male body
.............................................................................................................................ACGTGGCTTGTAGGTC.............................................................................................................	16	1	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................AGCAGAAAGTAAACGTA.......................................................	17	0	1	1.00	1	1	0	0	0	0
.................................TAGACTAGTCGGATGTGG.......................................................................................................................................................................................................	18	2	2	0.50	1	0	1	0	0	0
.................................TACACTATTGCGATGTGGTGC....................................................................................................................................................................................................	21	3	3	0.33	1	0	0	0	1	0
.....................................................................................................................................................TGTTTTAGCGGTAGTGGGT..................................................................................	19	2	3	0.33	1	1	0	0	0	0
..................................AGACTAGTCGGATGTGGTG.....................................................................................................................................................................................................	19	3	15	0.27	4	0	4	0	0	0
....................................................................................................................................................GTGTGTTAGCGTTAGCGGGT..................................................................................	20	1	4	0.25	1	1	0	0	0	0
...................................GACTATTCGGATGTGG.......................................................................................................................................................................................................	16	1	4	0.25	1	0	1	0	0	0
..................................AGACTATTCGGATGTGGT......................................................................................................................................................................................................	18	2	5	0.20	1	0	1	0	0	0
..................................AGACTAGTCGGATGTGG.......................................................................................................................................................................................................	17	2	6	0.17	1	0	1	0	0	0
........................................................TTACCGCTGGTGTCTG..................................................................................................................................................................................	16	1	19	0.11	2	2	0	0	0	0
......................................................................................................................................................................CGGACTGACTAGAACAGA..................................................................	18	3	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:20220925-20221174 +	dsi_11160	CGT--TTTG------CTGCTGATGCAAGCGGCTTG-AGGAGGA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCACAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------AACAACCAGCCCAGCCCACACAATCGCC---A-TC--GCCCACTGACTG-----ATCTCGTCTTTCATTTGCATTTCAGTTGCC-AAGCGGTTCAGACGCAGTCA-GCAAT--C----------------AGAGA-----AACC---AGACAT--CAAC
droSec2	scaffold_0:21052675-21052924 +		CGT--TTTG------CTGCTGATGCAAGCGGCTTG-AGGAGGA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCACAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------AACAACCAGCCCAGCCCACACAATCGCC---A-TC--GCCCACTGACTG-----ATCTCGTCTTTCATTTGCATTTCAGTTGCC-AAGCGGTTCAGACGCATTCA-GCAAT--C----------------AGAGA-----AACC---AGACAT--CAAC
dm3	chr3R:20704584-20704821 +		CGT--TTTG------CTGCTGATGCAAGCGGCTTG-AGGAGTA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCACAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------AACAACCAGCCC-----ACACAATCGCC---A-TC--GCCCACTGACTG-----ATCTCGTCTTTCATTTGCATTTCAGTTGCC-CAGCGGTTCAGACGCAATTA--------------------------GAGA-----AACC---AATCAT--CAAC
droEre2	scaffold_4820:7349051-7349290 -		CTA--TCTG------CTGCTGATGCAAGCGGCTTG-AGGAGTA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCACAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCC--------------AACAACCAGCCC-----CCACAATCGCA---A-TC--GCCCACTGACTG------TTTCGCCTTTCATTTGCATTTCAGTTACC-AAGCGGTTCAGACGCAATCA-GC----------------------AGAGA-----AACC---AGACAT--CAAC
droYak3	3R:25791173-25791413 -		CGA--TCTG------CTGCTGATGCAAGCGGATTG-AGGAGTA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCACAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------AACAACCAGCCT-----CCACAATCGCA---A-GC--GCCCACTGACTG-----TTCTCGTCTTTCATTTGCATTTCAGTTACC-AAGCGGTTCAGACGCAATCA-GC----------------------ATAGA-----AACC---AGACAT--CAAC
droEug1	scf7180000409881:437720-437958 +		CGA--TCTG------TTGCTGATGCAAGCGGTTTG-AGGAGTA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACTA--------------GGCAACCAGCCC-----A--CATTCGCA---A-TC--GCCCACTGACTG-----TTCTCGTTTTTCATTTCAATTTCAGTTGCC-CAGCGGTTCAGACGCAATCA-GT----------------------AGAAA-----AACA---AGACGT--CAAC
droBia1	scf7180000302402:4495380-4495620 +		CTA--TCTG------CTGCTGATGCAAGCGGTTTG-AGGAGTA--CCTGATAACCCTACACCTCTC-TAAT------GG-G-----------------------------------------GACCATAGACCGCAAGTGGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------AATAACCAGCCC-----A--CATTCGCA---A-TC--GCCCACTGACTG-----TTCTTGTCTTTCATTTGCATTTCAGTTGCC-CAGCGGTTCAGACGCAGTCA-GC----------------------AGAAA-----ATCA---AGGCAT--CAAC
droTak1	scf7180000415310:417481-417706 -		C---------------TGCTGATGCAAGCGGTTTG-AGGAGTA--TCTGATAACCCTACACCTCGC-CAAT------GG-G-----------------------------------------GACCATAGACCGCAAGTGGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------ATCAC---------------CGATCGCA---A-TC--GCCCACTGACTG-----TTCTCGTCTTTCATTTGCATTTCAGTTGCC-CAGCGGTTCAGACGCAGCCA-GC----------------------AGAGA-----AACC---AACCAT--CAAC
droEle1	scf7180000491194:10436-10681 -		--------G------CTGCTGATGCAAGCGGTTTTGAGCCGTA--TCTGATAACCCTACACCTCGC-TGAT------GG-G----------------------------------GACCGTAGATCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACTCCG------------AACAGCCAGCAA-----A--CAGCAACC---A-GC--CCACATTGACTA-----TTCTCGCCTTTCATTTGCATTTCAGTTGCC-CAGCGGTTAAGACGCAGCCA-GC----------------------AGAAA-----CACCAGAAGACAT--CAAC
droRho1	scf7180000779488:82862-83101 -		CGA--TCGG------CTGCTGATGCAAGCGGTTTG-AGGAGTA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCA--------------AGCCACCAGCCC-----A--CATTCGCG---ATTC--GCCCACTGACTG-----TTCTCGTTTTTCATTTGCATTTCAGTTGCC-CAGCGGTTCAGACGCAGCCA-GC----------------------CGAAA-----TATC---AGACAT--CAAC
droFic1	scf7180000454106:1594022-1594262 -		CGAACTCTG------CTGCTGATGCAAGCGGTTTG-AGGAGAA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------AGCAACCAGCCC-----A--CATCAGCC---A-TC--GCCCACTGACTG-----ATCTCGTTTTTCATTTACATTTCAGTTGCC-CGGCGGTTCGCACGCAACAA-GC----------------------AGAAA-----AAAT---AGACTT--CAAC
droKik1	scf7180000302461:2296010-2296242 -		CGA--TCGG------CTGCTGATGCAAGCGATTCG-AGGAGTA--TCCGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAAAAAGCGAAAACGCGAAAACATGTTTGTGCACTGCTCC-------CCAAGCATCCAG-----------------------------CCCACTGACA---CTCGTCTCGTCTTTCATTTGCATTTCAGTCGCC-CAGCGTATTGGACGTGGAAA-CC----------------------AGAAG-----ATCT---AGACAA--TCAT
droAna3	scaffold_13340:18944465-18944723 -		CTG--CCGG----CCCTGCTGATGCAAGCGGTTTG-GGGCGTAACTCTGATAACCCTACACCTCCCATAAT------GG-G----------------------------------ATCTGTAGACCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGAAAACATGTTTGTGCACCGCGTTCAGTTTTTTAGC--CCCAGCCC-----GT-------CC---A-AC--ACCCATTGACTT-----GTCTCGTCTTTCATTTGCATTTCAGTCTTC-CAACGGATCAGTCGCAGGAA-TC----------------------AATTG---C-TCCC---AGACAT--CAAC
droBip1	scf7180000395652:232652-232914 +		CGA--TCTGCCGGGGCTGCTGATGCAAGCGGTTTG-GGGAGTAACTCTGATAACCCTACACCTCCCATAAT------GG-G----------------------------------ATCTGTAGACCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGAAAACATGTTTGTGCACCGCGTTCAGTTTTTCAGC--CCCAGCCC-----AT-------CC---A-AC--ACCCATTGACTT-----GTCTCGTCTTTCATTTGCATTTCAGTCTTC-CAACGGATCAGTCGCAGGAA-TC----------------------AACAG---C-TCTT---AGACAT--CAAC
dp5	2:10047597-10047850 -		C---------------TGCTGATGCAAGCGGTTTGAATGCGAA--TTTGATAACCCCACAGCCTGC-AGCTGTAGCTGGGGGGGC------------TGCTATTTG-----TATCAACGACAAACCGCAGCCCACAG--CGGAGGTCGTTGCCTAG----------GCGAAAAAGCGAAAACATTTTTGTGCAATC-----------CCAAA--CCCAGCCT-----A--C----------G-TC--TCCAACTGA----TCTCGCTTCGTCTTTCATTTGCATTTCAGTCGCC-TAGTGGATCGGACGTAGCAACGCCTTGAAAACTA-------------------C-AT----------TCAGAAC
droPer2	scaffold_0:10434414-10434666 +		C---------------TGCTGATGCAAGCGGTTTGGATGCGAA--TTTGATAACCCCACAGCCTGC-AGCTGTAGCTGG-GGGGC------------TGCTATTTG-----TATCAACGACAAACCGCAGCCCACAG--CGGAGGTCGTTGCCTAG----------GCGAAAAAGCGAAAACATGTTTGTGCAATC-----------CCAAAC--ACAGCCT-----A--C----------G-TC--TCCAACTGA----TCTCGCTTCGTCTTTCATTTGCATTTCAGTCGCC-TAGTGGATCGGACGTTATAACGCCTTGAAAACTA-------------------C-AT----------TCAGAAT
droWil2	scf2_1100000004943:12718319-12718563 -		CGT--TTG---------GCTGATGCAAGCGA-----------A--TTCGATAACCCCCTAACT-------T------GG-GGGGCACCTCCACACCATGTTCATTGCCCCTTATCAACAGAAAACCGCAGCCCACA-----GAGGTCGTTGTCTAGCGCTGTA-TAGAAAAAAAGCGAAAACATGTTTGTGCAGTA--------------ATC--C--------------CAATCGCCTATG-TC--GCCCACTGACTGATCTTATTTCATCTTTCATTTACATTTCAGTTGTC-GAGTGAACCAGACATC-----------------------------TA---------------TTACAG--CAAC
droVir3	scaffold_12855:2435542-2435777 +		TTT--T---------TTGCTGATGCAAGCG-----------CA--TCAGATTACCCTTCCTCTGA---AATGTAAGGGG-GCAGG------------TTTCAATTGC----TATCAGT--TAAACCGCAGCCCACA-----GAGGTCGTTGCCTAGA-C-GAA-AA--------GCGAAAACATGTTTGTGCAATC-------------------CAAGTCC-----A--C----------G-TCT-GGCCACTGA----AATCGTTTCATCTTTCAATTGCATTTCAGTTGTC-AACTGAATCGCATGCAGCTA-GCAGGAGCAGC-CCAAGGA------------------------CTAG--GAAC
droMoj3	scaffold_6540:11646001-11646247 +		-----------------GCTGATGCAAGCGAGTG-------------GGATGACCCTTCCCCTGA---ATCGCAGAGAG-GGGGG------------TCCTATTCGC----TATCAGCTCGAAGCCGCAGCCCACA-----GAGGTCGTTGCCTAGG-T-GAA-AA--------GCGAAAACATGTTTGTGCAGTT--------------TG--TGCAGCCC-----A--C----------G-TCG-GTGCATTGA----AATCGTTTCATCTTTCATTTGCATTTCAGCTACC-GAGTGAAACGCACGTACGCACGC----------CCAAGGACCAGCAAAGATGGCAAACC---AGAAAA--T-AG
droGri2	scaffold_14624:2505804-2505969 -		GAA--ATTG----------------------------------------------------------------------------------------------------------------------CAGCCCACA-----GAGGTCGTTGCCTAG-----------CGAAAAAGCGAAAACATGTTTGTGCAA-----------------A--TGCAGCCT-----A--C----------G-TCCGACAAACTGA----AATCATTTCATCTTTCATTTGCATTTCAGTCTTCGAAGTGAAACGTACGCAAAACGGCAATACGAACTCAAAGGA------------------------TCAG--CAAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CGT--TTTG------CTGCTGATGCAAGCGGCTTG-AGGAGGA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCACAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------AACAACCAGCCCAGCCCACACAATCGCC---A-TC--GCCCACTGACTG-----ATCTCGTCTTTCATTTGCATTTCAGTTGCC-AAGCGGTTCAGACGCAGTCA-GCAAT--C----------------AGAGA-----AACC---AGACAT--CAAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................................................ATTTCAGTTGCC-AAGCGGTTCAGA..............................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AGTTGCC-AAGCGGTTCAGA..............................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................AT------GG-G-----------------------------------------GACCACAGACCG...........................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TTCAGACGCAGTCA-GCAAT--C----------------AGAGA-----...................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TGCCTAGC-CAGAA-AAGCGAA......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................CCCACTGACTG-----ATCC.....................................................................................................	15	17	0.06	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

CGT--TTTG------CTGCTGATGCAAGCGGCTTG-AGGAGGA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCACAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------AACAACCAGCCCAGCCCACACAATCGCC---A-TC--GCCCACTGACTG-----ATCTCGTCTTTCATTTGCATTTCAGTTGCC-AAGCGGTTCAGACGCATTCA-GCAAT--C----------------AGAGA-----AACC---AGACAT--CAAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................................................................................................................................................GTTGCC-AAGCGGTTCAGA..............................................................	18	1	1.00	1	0	0	0	1
....................................................................................................................................................................................................................................................................................ATTTGCATTTCAGTTGCC-AAGCGGTTC.................................................................	27	1	1.00	1	0	0	0	1
...........................................................................................................................ACCACAGACCGCAG--GGGAGGTT..............................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................................................................................................GCAAT--C----------------AGAGA-----AACC---AGACAT--CA..	23	1	1.00	1	0	0	0	1
....................................................................................................................................................................................................................................................................................................................GCATTCA-GCAAT--C----------------AGAGA-----AA.................	20	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................................ATTCA-GCAAT--C----------------AGAGA-----AACC---............	20	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................GTTGCC-AAGCGGTTCAGACG............................................................	20	1	1.00	1	1	0	0	0
...........................................................................................................................ACCACAGACCGCAG--GGGAGGTCGTTG..........................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................AGACGCATTCA-GCAAT--C----------------A............................	18	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................CGCATTCA-GCAAT--C----------------AGAGA-----AACC---AGA.........	26	1	1.00	1	0	0	0	1

dm3

CGT--TTTG------CTGCTGATGCAAGCGGCTTG-AGGAGTA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCACAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------AACAACCAGCCC-----ACACAATCGCC---A-TC--GCCCACTGACTG-----ATCTCGTCTTTCATTTGCATTTCAGTTGCC-CAGCGGTTCAGACGCAATTA--------------------------GAGA-----AACC---AATCAT--CAAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................ATTTCAGTTGCC-CAGCGGTTC.................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TGCC-CAGCGGTTCAGACGCA..........................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................ATTTGCATTTCAGTTGCC-CAGCGGT...................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TGCC-CAGCGGTTCAGACGCAATTA--------------------------GAG.........................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGATGCAAGCGGCTTG-AGGAGTA--TC..................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TGCATTTCAGTTGCC-CAGC......................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GTTGCC-CAGCGGTTCAGG..............................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TGCC-CAGCGGTTCAGACGC...........................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................TCAGACGCAATTA--------------------------GAGA-----AACC---AATCAT--C...	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GCC-CAGCGGTTCAGACGCAATTA--------------------------GAGA-----...................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TAAT------GG-G-----------------------------------------GACCACAGACCGCAG--......................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TG-----ATCTCGTCTTTCATTTGCATTTCAGT...............................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AGTTGCC-CAGCGGTTCAGACGCA..........................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GTTGCC-CAGCGGTTCAGACGCAG.........................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................GACCGCAG--GGGAGGTCGTTGCCTAGC-...................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................C-CAGCGGTTCAGACGCAA.........................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CGCAATTA--------------------------GAGA-----AACC---AGA.........	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CTA--TCTG------CTGCTGATGCAAGCGGCTTG-AGGAGTA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCACAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCC--------------AACAACCAGCCC-----CCACAATCGCA---A-TC--GCCCACTGACTG------TTTCGCCTTTCATTTGCATTTCAGTTACC-AAGCGGTTCAGACGCAATCA-GC----------------------AGAGA-----AACC---AGACAT--CAAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................................................................................................................................................................GACGCAATCA-GC----------------------AGAGA-----AACC---AGA.........	24	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................ATTTCAGTTACC-AAGCGG....................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................C-AAGCGGTTCAGACGCAATCA-GC----------------------.............................	23	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................CAGACGCAATCA-GC----------------------AGAG.........................	18	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TTTCAGTTACC-AAGCGGTTCAGACGCA..........................................................	27	1	1.00	1	0	0	1	0	0	0	0
........................................................TACACCTCGC-TAAT------GG-G-----------------------------------------GACCACAGAC.............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................TCA-GC----------------------AGAGA-----AACC---AGAC........	18	1	1.00	1	0	0	0	0	0	1	0

droYak3

CGA--TCTG------CTGCTGATGCAAGCGGATTG-AGGAGTA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCACAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------AACAACCAGCCT-----CCACAATCGCA---A-GC--GCCCACTGACTG-----TTCTCGTCTTTCATTTGCATTTCAGTTACC-AAGCGGTTCAGACGCAATCA-GC----------------------ATAGA-----AACC---AGACAT--CAAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................................................................................................................................................................................................................AATCA-GC----------------------ATAGA-----AACC---AGAC........	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEug1

CGA--TCTG------TTGCTGATGCAAGCGGTTTG-AGGAGTA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACTA--------------GGCAACCAGCCC-----A--CATTCGCA---A-TC--GCCCACTGACTG-----TTCTCGTTTTTCATTTCAATTTCAGTTGCC-CAGCGGTTCAGACGCAATCA-GT----------------------AGAAA-----AACA---AGACGT--CAAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTA--TCTG------CTGCTGATGCAAGCGGTTTG-AGGAGTA--CCTGATAACCCTACACCTCTC-TAAT------GG-G-----------------------------------------GACCATAGACCGCAAGTGGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------AATAACCAGCCC-----A--CATTCGCA---A-TC--GCCCACTGACTG-----TTCTTGTCTTTCATTTGCATTTCAGTTGCC-CAGCGGTTCAGACGCAGTCA-GC----------------------AGAAA-----ATCA---AGGCAT--CAAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C---------------TGCTGATGCAAGCGGTTTG-AGGAGTA--TCTGATAACCCTACACCTCGC-CAAT------GG-G-----------------------------------------GACCATAGACCGCAAGTGGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------ATCAC---------------CGATCGCA---A-TC--GCCCACTGACTG-----TTCTCGTCTTTCATTTGCATTTCAGTTGCC-CAGCGGTTCAGACGCAGCCA-GC----------------------AGAGA-----AACC---AACCAT--CAAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

--------G------CTGCTGATGCAAGCGGTTTTGAGCCGTA--TCTGATAACCCTACACCTCGC-TGAT------GG-G----------------------------------GACCGTAGATCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACTCCG------------AACAGCCAGCAA-----A--CAGCAACC---A-GC--CCACATTGACTA-----TTCTCGCCTTTCATTTGCATTTCAGTTGCC-CAGCGGTTAAGACGCAGCCA-GC----------------------AGAAA-----CACCAGAAGACAT--CAAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGA--TCGG------CTGCTGATGCAAGCGGTTTG-AGGAGTA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCA--------------AGCCACCAGCCC-----A--CATTCGCG---ATTC--GCCCACTGACTG-----TTCTCGTTTTTCATTTGCATTTCAGTTGCC-CAGCGGTTCAGACGCAGCCA-GC----------------------CGAAA-----TATC---AGACAT--CAAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGAACTCTG------CTGCTGATGCAAGCGGTTTG-AGGAGAA--TCTGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGTAAACATGTTTGTGCACCG--------------AGCAACCAGCCC-----A--CATCAGCC---A-TC--GCCCACTGACTG-----ATCTCGTTTTTCATTTACATTTCAGTTGCC-CGGCGGTTCGCACGCAACAA-GC----------------------AGAAA-----AAAT---AGACTT--CAAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGA--TCGG------CTGCTGATGCAAGCGATTCG-AGGAGTA--TCCGATAACCCTACACCTCGC-TAAT------GG-G-----------------------------------------GACCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAAAAAGCGAAAACGCGAAAACATGTTTGTGCACTGCTCC-------CCAAGCATCCAG-----------------------------CCCACTGACA---CTCGTCTCGTCTTTCATTTGCATTTCAGTCGCC-CAGCGTATTGGACGTGGAAA-CC----------------------AGAAG-----ATCT---AGACAA--TCAT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTG--CCGG----CCCTGCTGATGCAAGCGGTTTG-GGGCGTAACTCTGATAACCCTACACCTCCCATAAT------GG-G----------------------------------ATCTGTAGACCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGAAAACATGTTTGTGCACCGCGTTCAGTTTTTTAGC--CCCAGCCC-----GT-------CC---A-AC--ACCCATTGACTT-----GTCTCGTCTTTCATTTGCATTTCAGTCTTC-CAACGGATCAGTCGCAGGAA-TC----------------------AATTG---C-TCCC---AGACAT--CAAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................AA-TC----------------------AATTG---C-TCCC---AGACAT--CA..	22	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TGCATTTCAGTCTTC-CAACGG....................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AGTCGCAGGAA-TC----------------------AATTG---C-TCCC---AGA.........	26	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................CAACGGATCAGTCGCAGGAA-T....................................................	21	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................ATCAGTCGCAGGAA-TC----------------------AATTG---C-TCCC---A...........	27	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CTTC-CAACGGATCAGTCGCAGG........................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AA-TC----------------------AATTG---C-TCCC---AGAC........	18	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CGCAGGAA-TC----------------------AATTG---C-TCCC---AGACAT--C...	27	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................ATCAGTCGCAGGAA-TC----------------------AATTG---C-TCC................	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TCAGTCGCAGGAA-TC----------------------AATTG---.....................	20	1	1.00	1	0	0	1	0	0	0

droBip1

CGA--TCTGCCGGGGCTGCTGATGCAAGCGGTTTG-GGGAGTAACTCTGATAACCCTACACCTCCCATAAT------GG-G----------------------------------ATCTGTAGACCGTAGACCGCAG--GGGAGGTCGTTGCCTAGC-CAGAA-AAGCGAAAACGCGAAAACATGTTTGTGCACCGCGTTCAGTTTTTCAGC--CCCAGCCC-----AT-------CC---A-AC--ACCCATTGACTT-----GTCTCGTCTTTCATTTGCATTTCAGTCTTC-CAACGGATCAGTCGCAGGAA-TC----------------------AACAG---C-TCTT---AGACAT--CAAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

C---------------TGCTGATGCAAGCGGTTTGAATGCGAA--TTTGATAACCCCACAGCCTGC-AGCTGTAGCTGGGGGGGC------------TGCTATTTG-----TATCAACGACAAACCGCAGCCCACAG--CGGAGGTCGTTGCCTAG----------GCGAAAAAGCGAAAACATTTTTGTGCAATC-----------CCAAA--CCCAGCCT-----A--C----------G-TC--TCCAACTGA----TCTCGCTTCGTCTTTCATTTGCATTTCAGTCGCC-TAGTGGATCGGACGTAGCAACGCCTTGAAAACTA-------------------C-AT----------TCAGAAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................GTCGCC-TAGTGGATCGGACGTA..........................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................TTGCATTTCAGTCGCC-TAGTGGA...................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GACGTAGCAACGCCTTGAAAAC..........................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GTCGCC-TAGTGGATCGGACGTAG.........................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTAGCAACGCCTTGAAAACTA-------------------C-...................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CC-TAGTGGATCGGACGTA..........................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................GATCGGACGTAGCAACGCC..................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

C---------------TGCTGATGCAAGCGGTTTGGATGCGAA--TTTGATAACCCCACAGCCTGC-AGCTGTAGCTGG-GGGGC------------TGCTATTTG-----TATCAACGACAAACCGCAGCCCACAG--CGGAGGTCGTTGCCTAG----------GCGAAAAAGCGAAAACATGTTTGTGCAATC-----------CCAAAC--ACAGCCT-----A--C----------G-TC--TCCAACTGA----TCTCGCTTCGTCTTTCATTTGCATTTCAGTCGCC-TAGTGGATCGGACGTTATAACGCCTTGAAAACTA-------------------C-AT----------TCAGAAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................................................................................................................GCC-TAGTGGATCGGACGTTA.........................................................	20	1	1.00	1	0	0	0	0	0	1

droWil2

CGT--TTG---------GCTGATGCAAGCGA-----------A--TTCGATAACCCCCTAACT-------T------GG-GGGGCACCTCCACACCATGTTCATTGCCCCTTATCAACAGAAAACCGCAGCCCACA-----GAGGTCGTTGTCTAGCGCTGTA-TAGAAAAAAAGCGAAAACATGTTTGTGCAGTA--------------ATC--C--------------CAATCGCCTATG-TC--GCCCACTGACTGATCTTATTTCATCTTTCATTTACATTTCAGTTGTC-GAGTGAACCAGACATC-----------------------------TA---------------TTACAG--CAAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................................................................AGTTGTC-GAGTGAACCAGACATC-----------------------------T............................	24	1	5.00	5	5	0	0	0	0
.............................................................................................................................................................................................................................................................................................................ACCAGACATC-----------------------------TA---------------TTACAG--....	18	1	3.00	3	0	0	0	0	3
...........................................................................................................................................................................................................................................................................................TTTCAGTTGTC-GAGTGAACCAGACA............................................................	25	1	3.00	3	2	0	0	0	1
.....................................................................................................................................................................................................................................................................................................C-GAGTGAACCAGACATC-----------------------------T............................	18	1	2.00	2	2	0	0	0	0
...................................................................................................................................CCACA-----GAGGTCGTTGTCTAGCGCTG................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................ATTTCAGTTGTC-GAGTGAACCAGACA............................................................	26	1	2.00	2	2	0	0	0	0
............................................................................................................................................................................................................................................................................................TTCAGTTGTC-GAGTGAACCAGACA............................................................	24	1	1.00	1	0	0	0	0	1
................................................................................................................................................................................................................................................................................................GTTGTC-GAGTGAACCAGACATC-----------------------------T............................	23	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................GTTGTC-GAGTGAACCAGACA............................................................	20	1	1.00	1	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................TTTCAGTTGTC-GAGTGAACCAGAC.............................................................	24	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................GTC-GAGTGAACCAGACATC-----------------------------.............................	19	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................ATGTTTGTGCAGTA--------------ATC--C--------------CA.........................................................................................................................................	20	1	1.00	1	0	0	1	0	0

droVir3

TTT--T---------TTGCTGATGCAAGCG-----------CA--TCAGATTACCCTTCCTCTGA---AATGTAAGGGG-GCAGG------------TTTCAATTGC----TATCAGT--TAAACCGCAGCCCACA-----GAGGTCGTTGCCTAGA-C-GAA-AA--------GCGAAAACATGTTTGTGCAATC-------------------CAAGTCC-----A--C----------G-TCT-GGCCACTGA----AATCGTTTCATCTTTCAATTGCATTTCAGTTGTC-AACTGAATCGCATGCAGCTA-GCAGGAGCAGC-CCAAGGA------------------------CTAG--GAAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................................................................................................................................................................................TGTC-AACTGAATCGCATGCA..........................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GAGCAGC-CCAAGGA------------------------CTAG--GAAC	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CGCATGCAGCTA-GCAGGA...............................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................CACA-----GAGGTCGTTGCCTAGA-C-GA...............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................AGTTGTC-AACTGAATCGCA..............................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................A-GCAGGAGCAGC-CCAAGGA------------------------CTAG--GAAC	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TTGCATTTCAGTTGTC-AACTGAATC.................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GTTGTC-AACTGAATCGCATGC...........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................ATGCAGCTA-GCAGGAGCA............................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AGCTA-GCAGGAGCAGC-CCAAGGA------------------------..........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................CAGCTA-GCAGGAGCAGC-CC.......................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTGCCTAGA-C-GAA-AA--------GCG................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AGCTA-GCAGGAGCAGC-CCAA.....................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GCTA-GCAGGAGCAGC-CCAAG....................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CGCATGCAGCTA-GCAGGAGCA............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GCAGC-CCAAGGA------------------------CTAG--GAAC	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GAATCGCATGCAGCTA-GCAGGAGCAG...........................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................TGA---AATGTAAGGGG-GCAGG------------TTTCAAT.........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CATGCAGCTA-GCAGGAGC.............................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TGTC-AACTGAATCGCATGCAGCTA-G....................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................ATGCAGCTA-GCAGGAGCAGC-CC.......................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GTTGTC-AACTGAATCGCAT.............................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AGGAGCAGC-CCAAGGA------------------------CT........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................ATCGCATGCAGCTA-GCAGGAGC.............................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GTTGTC-AACTGAATCGCATGCAGCT.......................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

-----------------GCTGATGCAAGCGAGTG-------------GGATGACCCTTCCCCTGA---ATCGCAGAGAG-GGGGG------------TCCTATTCGC----TATCAGCTCGAAGCCGCAGCCCACA-----GAGGTCGTTGCCTAGG-T-GAA-AA--------GCGAAAACATGTTTGTGCAGTT--------------TG--TGCAGCCC-----A--C----------G-TCG-GTGCATTGA----AATCGTTTCATCTTTCATTTGCATTTCAGCTACC-GAGTGAAACGCACGTACGCACGC----------CCAAGGACCAGCAAAGATGGCAAACC---AGAAAA--T-AG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................................................................................................................................C----------CCAAGGACCAGCAAAGATGGCC...................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AAGGACCAGCAAAGATGGCAAAC................	23	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................GCACGC----------CCAAGGACCAGCA............................	19	1	1.00	1	1	0	0	0	0	0
.........................................................TCCCCTGA---ATCGCAGAGAG-GG...............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
...................................................................................................................................CCACA-----GAGGTCGTTGCCTAG.....................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................GTT--------------TG--TGCAGCCC-----A--C----------G-TC............................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GAGTGAAACGCACGTACG........................................................	18	1	1.00	1	1	0	0	0	0	0

droGri2

GAA--ATTG----------------------------------------------------------------------------------------------------------------------CAGCCCACA-----GAGGTCGTTGCCTAG-----------CGAAAAAGCGAAAACATGTTTGTGCAA-----------------A--TGCAGCCT-----A--C----------G-TCCGACAAACTGA----AATCATTTCATCTTTCATTTGCATTTCAGTCTTCGAAGTGAAACGTACGCAAAACGGCAATACGAACTCAAAGGA------------------------TCAG--CAAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................................................................................................................................................................................................................CAAAACGGCAATACGAACT.........................................	19	1	2.00	2	2	0
.............................................................................................................................................................................................................................................................................................TCAGTCTTCGAAGTGAAACGTACG............................................................	24	1	2.00	2	2	0
...............................................................................................................................................................................................................................................................................................................................ATACGAACTCAAAGGA------------------------TCA.......	19	1	2.00	2	2	0
.................................................................................................................................................................................................................................................................................................................................ACGAACTCAAAGGA------------------------TCAG--CAAC	22	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................GCATTTCAGTCTTCGAAGT......................................................................	19	1	1.00	1	1	0
...............................................................................................................................................................................................................................................................................................................................ATACGAACTCAAAGGA------------------------TCAG--C...	21	1	1.00	1	1	0
...........................................................................................................................................................................................................................................................................................TTTCAGTCTTCGAAGTGAAACGTA..............................................................	24	1	1.00	1	0	1
.............................................................................................................................................................................................................................................................................................................................CAATACGAACTCAAAGGA------------------------TCA.......	21	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................AACGGCAATACGAACTCAAAGGA------------------------TCA.......	26	1	1.00	1	1	0
...............................................................................................................................................................................................................................................................................................AGTCTTCGAAGTGAAACGTACGCAAA........................................................	26	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................AACGGCAATACGAACTCAAAGGA------------------------..........	23	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................................................................................GAACTCAAAGGA------------------------TCAG--CAA.	19	1	1.00	1	1	0
.......................................................................................................................................................................................................................................................................................................................AAACGGCAATACGAACTCAAAGGA------------------------TC........	26	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................AGTGAAACGTACGCAAAACGG....................................................	21	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................AACGGCAATACGAACTCAAAGGA------------------------TC........	25	1	1.00	1	1	0
....................................................................................................................................................................................................................................................................................................................GCAAAACGGCAATACGAACT.........................................	20	1	1.00	1	1	0
....................................................................................................................................................................................................................................................................................ATTTGCATTTCAGTCTTCGAAGTG.....................................................................	24	1	1.00	1	1	0
.........................................................................................................................................................................................................................................................................................................................ACGGCAATACGAACTCAAAGGA------------------------TCAG--CA..	28	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................AACGTACGCAAAACGGCAATACGAACT.........................................	27	1	1.00	1	1	0
.....................................................................................................................................................................................................................................................................................................................CAAAACGGCAATACGAACTCAAAGGA------------------------TC........	28	1	1.00	1	0	1
.........................................................................................................................................................................................................................................................................................................GTGAAACGTACGCAAAACGGCAATACG.............................................	27	1	1.00	1	1	0
.........................................................................................................................................................................................................................................................................................................GTGAAACGTACGCAAAACGGCAATAC..............................................	26	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................................................................................GAACTCAAAGGA------------------------TCAG--CA..	18	1	1.00	1	1	0
.......................................................................................................................................................................................................................................................................................................................AAACGGCAATACGAACTCAAAG....................................	22	1	1.00	1	1	0
....................................................................................................................................................................................................................................................................................ATTTGCATTTCAGTCTTCG..........................................................................	19	1	1.00	1	1	0
.......................................................................................................................................................................................................................................................................................................................AAACGGCAATACGAACTCAAAGGA------------------------..........	24	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................TCAGTCTTCGAAGTGAAACG................................................................	20	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................AACGTACGCAAAACGGCAATACGA............................................	24	1	1.00	1	1	0
.......................................................................................................................................................................................................................................................................................................AAGTGAAACGTACGCAAAACG.....................................................	21	1	1.00	1	0	1
.............................................................................................................................................................................................................................................................................................TCAGTCTTCGAAGTGAAACGTACGCA..........................................................	26	1	1.00	1	0	1
..........................................................................................................................................................................................................................................................................................................................CGGCAATACGAACTCAAAGGA------------------------TC........	23	1	1.00	1	1	0
................................................................................................................................................................................................................................................................................................GTCTTCGAAGTGAAACGTACGCA..........................................................	23	1	1.00	1	1	0
....................................................................................................................................................................................................................................................................................................TCGAAGTGAAACGTACGCAAAACGGC...................................................	26	1	1.00	1	1	0
..........................................................................................................................................................................................................................................................................................ATTTCAGTCTTCGAAGTGAAAC.................................................................	22	1	1.00	1	1	0
.........................................................................................................................................................................................................................................................................................................................ACGGCAATACGAACTCAAA.....................................	19	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................................................................AAAACGGCAATACGAACTCAAAGGA------------------------TC........	27	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................................................................AAAACGGCAATACGAACTCA.......................................	20	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................................................................CGCAAAACGGCAATACGAACT.........................................	21	1	1.00	1	0	1
......................................................................................................................................................................................................................................................................................................GAAGTGAAACGTACGCAAAACGGCAATA...............................................	28	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................AACGGCAATACGAACTCAA......................................	19	1	1.00	1	1	0
....................................................................................................................................................................................................................................................................................................TCGAAGTGAAACGTACGCAAAACGGCA..................................................	27	1	1.00	1	1	0

dsi_11160

3r:20220975-20221124 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-9.8	-9.7	-9.7