ID:

dsi_1115

 Coordinate:

3r:1547842-1548007 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.3 -6.3 -6.3

Flybase annnotation

exon [3r_1548008_1549267_+]; CDS [3r_1548008_1548772_+]; exon [3r_1547597_1547841_+]; CDS [3r_1547597_1547841_+]; intron [3r_1547842_1548007_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGTCGGCCTGTTTATCGTGCCCGAAACGCCAGTGTATCTACTTAAAAGGGTAAGGAACCTTGGAAACCAGTCAAAAACTTTACCAAAAATCAATCTGAAGTATTTTTGAAATCTTTATTCCAAATATTTTCGAAATGCTCCGGTTTTGTATAGTTTGGACGATGATTAGATTATCAATATTGCTTTATACTGATTTACACGTTTTTAAATTGCAGGGTAGGCGCTCCGAGGCCAATCGTGCACTAAAATGGCTGTGGGGAGATTA
********************************************************************************************.......((((((((.(((((.(((.....))).))))).)))))))).***************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
..............................................................................................................................ATTTTCGAAATGCTC............................................................................................................................. 15 0 1 2.00 2 0 2 0 0 0 0 0 0
................................................................................................................................................................................................................................................GCACTAAAATGGCTGTGGGGA..... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................AATCTGAAGTATTTTTGAAATC........................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTAGGCGCTCCGAGGCCAATCGTGCACTA.................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................CTAAAATGGCTGTGGGGAGA... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................CACTAAAATGGCTGTGGGGGG.... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................CTAAAATGGCTGTGGGGA..... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCTCCGAGGCCAATCGTGCAC...................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
................CGTGCCCGAAACGCCAGTGT...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................................................ATTTTCGAAATGCTCT............................................................................................................................ 16 1 20 0.35 7 0 7 0 0 0 0 0 0
................................................................................................TGAAGTATTTTTGAA........................................................................................................................................................... 15 0 4 0.25 1 0 0 0 0 0 1 0 0
.............................................AAACGGTAACGAACCTTGCAA........................................................................................................................................................................................................ 21 3 4 0.25 1 0 0 0 0 0 0 1 0
.......................................................................TCAAACACTCTACCAAAA................................................................................................................................................................................. 18 2 13 0.08 1 0 0 0 0 0 0 0 1
....................................................AAGTCACCTTGGAGACCAG................................................................................................................................................................................................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

AGCAGCCGGACAAATAGCACGGGCTTTGCGGTCACATAGATGAATTTTCCCATTCCTTGGAACCTTTGGTCAGTTTTTGAAATGGTTTTTAGTTAGACTTCATAAAAACTTTAGAAATAAGGTTTATAAAAGCTTTACGAGGCCAAAACATATCAAACCTGCTACTAATCTAATAGTTATAACGAAATATGACTAAATGTGCAAAAATTTAACGTCCCATCCGCGAGGCTCCGGTTAGCACGTGATTTTACCGACACCCCTCTAAT
*****************************************************************************************************************************.......((((((((.(((((.(((.....))).))))).)))))))).******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...................................................................GGTAAGTTTTTGAAATGGTTGTT................................................................................................................................................................................ 23 2 1 1.00 1 0 0 0 1 0 0
.......................................................................................................................................TACGAGGCCAAAACATATCAAAC............................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0
AGCAGCCTGACATATAGCA....................................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0
.......................................................CTTGGAACCTCTGGTC................................................................................................................................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0
.........................................................TGGAACCTCTGGTCA.................................................................................................................................................................................................. 15 1 20 0.20 4 4 0 0 0 0 0
.........................................................TGGAACCTTTGGTCG.................................................................................................................................................................................................. 15 1 11 0.18 2 2 0 0 0 0 0
............................................................................................................................................................................................................................CCGATAGGCTCCGGTTGGC........................... 19 3 13 0.15 2 0 0 0 0 2 0
......................................................................................................................................................................................................................................CCGGGTGGCACGTGATT................... 17 2 9 0.11 1 1 0 0 0 0 0
...........................................ATGTTCCCAGTCCTTG............................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 2
.........................................................TGGAACCTCTGGGCAGT................................................................................................................................................................................................ 17 2 11 0.09 1 1 0 0 0 0 0
.............ATCGCGCGGGCTTTGC............................................................................................................................................................................................................................................. 16 2 19 0.05 1 0 0 0 0 0 1
AGCAGCCTGACAAATAA......................................................................................................................................................................................................................................................... 17 2 19 0.05 1 0 1 0 0 0 0
.....................................................TCATTGGAACCTCTGGTCG.................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:1547792-1548057 + dsi_1115 TCGTCGGCCTGTTTATCGTGCCCGAAACGCCAGTGTATCTACTTAAAAGGGTAAGGAACCTT-----GGAAACCA----------GTCAAA----------------------------------------------------------------------------------AACTTTACCAAAAATCAAT-----------------------CTGAAGTATTTTTGAAA-----------------------------------------------------------------------------------------------------------------TCTTTATTCC---------------AAATATTTT-CGAAA-------TGCTCCGGT-----TTTGTATAGTTTGGACGA-TGATTAGATTATCAATATTGCTTTATACTGA-------------------------TTTACACGTTTTTAAATT---------GCAGGGTAGGCGCTCCGAGGCCAATCG---TGCACTAAAATGGCTGTGGGGAG------ATTA
droSec2 scaffold_6:1766843-1767105 + TCGTCGGCCTGTTTATCGTGCCCGAAACGCCAGTGTATCTACTTAAAAGGGTAAGGAACCTT-----GGAAACCA----------GTCAAA----------------------------------------------------------------------------------AACTTTACCAAAAACCAAT-----------------------CTGAAGTATTTTTGAAA-----------------------------------------------------------------------------------------------------------------TCTTAATTCC---------------AAATATTTT-CCAAA-------TGCTTCGGTTACGTTTTATATAGTTTGGAC---------GATTATCAATATTGCTTTATACTGA-------------------------TTTACACGTTTTTAAATT---------GCAGGGTAGGCGCTCCGAGGCCAGTCG---CGCACTAAAATGGCTGTGGGGAG------ATTA
dm3 chr3R:1663014-1663290 + TCGTCGGCCTGTTTATCGTGCCCGAGACGCCAGTGTATCTACTTAAAAACGTAAGGGTCTCA-----GG-------------------------------------------------------------------T-------CCCTG------------AGAGCTATACAAAATTGT---ATAAACCTTT-----------------------CTAAAGTATTTTTTAAA-----------------------------------------------------------------------------------------------------------------TCTTTATTCC---------------AAATATTTT-TCAAATGCTAAATGCTTCGGTTACGTTTTGTATAGTTCAGACAA-TGATTTGATTATCAATATTTATTTATACGG-----------------------------ACACATTTTTAAATT---------GCAGGGTAAGCGCTCCGAGGCCAATCG---CGCACTAAAATGGCTGTGGGGAG------ATTA
droEre2 scaffold_4770:1927440-1927668 + TCTTCGGCCTGTTTATCGTGCCCGAAACTCCAGTATATCTACTTAAGAGGGTAAGGGACTTG-----AGAAACCC----------GGCAA-----------------------------------------------------------------------------------------------------T-----------------------ATAAAGTATTTTT--------------------------------------------------ATGAAGGCATGCAATA-------CTATTAGAACGTATATAT--------------------CTTA--------------------------------------------------------------------------------A-TGATTTGATGAACCATATTGACTTAGACTGT-------------------------GGTA--CCCTTTTGAATT---------CCAGGGCAAGCGCTCCGAGGCGAATCG---CGCACTAAAATGGCTGTGGGGAG------ATTA
droYak3 3R:17610098-17610304 + TCTGCGGCCTGTTTATCGTGCCTGAAACTCCAGTATATCTACTTAAAAGGGTAAGGAACTAC-----ACAAA-------------------------------------------------------------------------------------------------------TTTT---ATAAATCAAT-----------------------CTTTAGTTTTT------C------------------------------------------GA-----------------TTGGGATTTTCTAGG-----------------------TTGATGTCCTA--------------------------------------------------------------------------------A-TGATTTTATTAACAATTTTGA-------------------------------------------TTATTTAATT---------CCAGGGTAAGCGCTCCGAGGCCAATCG---CGCACTAAAATGGCTGTGGGGAG------ATTA
droEug1 scf7180000409766:632659-632906 + TAATTGGTCTTCTCTTCCTGCCTGAAACTCCAGTTTATCTTCTAAAGAGGGTAAGTCCGTTC-----AGAGAATC----------AATGAT----------------------------------------------------------------------------------GA--ATTCTAG---------------------------------------------------------------GAAATATAAT-------------GAAAATATAAGGA-AACAGAAATC-----------------TCAGACAG------------AGATAGATTTTTATGTTCCAGGTTCTAAGCTTTCTAAGT--------------------------------------------------------------------------------------CTC---ATATTACTA------ATAC-----CTTATTTTGTCTT---------ACAGGGAAAACGCTCCGAGGCCAATCG---CGCACTGAAATGGTTGTGGGGTG------ATTA
droBia1 scf7180000302155:3088380-3088623 - TAATCGGACTCTTTTTCCTGCCCGAAACTCCTGTCTACCTCCTTAAAAGGGTAAGCAAACTG-----AGAAACCC----------ATTTAA----------------------------------------------------------------------------------ATATATACTAT---------------------------------------------------------------CTAACAGTTT-------------GTAATAATACGGAGAACTGAAATA-----------------TTACATTTAAATATGATTTACGTTACATTTT-ATATTA-AAAC------------------------------------------------------------------------------------------------------ATTTTGATA---TTA------AAA------CCAATTTGGACTT---------GCAGGGCAAACGATCCGAGGCCAACAG---CGCCTTGAAATGGTTGTGGGGTG------ATTA
droTak1 scf7180000415754:86990-87153 - TAATCGGCCTGTTCTTCCTGCCCGAAACTCCAGTGTATCTTCTTAAAAGGGTAAGCGAGTTG-----ATTTC--------------------------------------------------------------------ATGTTTTTTATATTTTTAAAAACGC----------CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA------CCAATTTTGACTT---------TCAGGGCAAGCGTTCCGAGGCCAATAG---CGCCCTGAAATGGTTGTGGGGTG------ACTA
droEle1 scf7180000491278:339372-339456 + TAATCGGTCTGTTTTTTCTGCCCGAAACTCCAGTCTACCTGCTTAAAAGGGTATGTGGGCTG-----GGAAAACC----------ATTTAT----------------------------------------------------------------------------------AACTATACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000778173:9977-10159 + CAGAAAAAAATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGAAAATAATT-----------------------TTAAAGTATTTTGCAGA-----------------------------------------------------------------------------------------------------------------CCTTTAAAGC---------------AAAAAATTTCACAGT-------TGT-----------TCTGTGCATCGCCGACTAGGGATCATTTTATCA---TAATTTAAAGCTAA-------------------------ATTATGCGCTTGGACCGACCATTGAGGACAACGGAGATGGTCC--GGCCAATTA---GGCACTCAAT---------------------TG
droFic1 scf7180000453850:1082179-1082257 + TGGTCGGTCTGTTCTTCCTGCCCGAAACTCCTGTCTATCTGCTTAAAAGGGTAAGCGAACCA-----AGGAAAGC----------AGATAG----------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
droKik1 scf7180000302276:340472-340628 - TCTGTGGCCTGCTCATCCTGCCAGAGACCCCAGTCTATCTGCTTAAGAAGGTTAGTGAGCTG-----GGAATATA-----------C------------ATATTTTGGACTTAGCTGA------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTCCCACCTT---------GCAGGGTCGCCGTTCCGAGGCCGCTCT---CTCGTTGAAATGGCTGTGGGGCC------GCTA
droAna3 scaffold_13340:18442406-18442569 - TGGCTGGACTTTTTATTCTGCCCGAAACTCCAGTCTATCTTTTGAAAAAGGTAAGTTAAAAGAATGAAGA---------------AATTTG--AAATAT-----TACTATTTAACTAA------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTAATCTT---------TTAGGGTCGTCGCTCTGAGGCTGCTCT---TTCGCTGAAATGGCTTTGGGGTC------GCTA
droBip1 scf7180000396708:4924273-4924440 + TGGCTGGACTTTTCATCCTGCCCGAGACTCCAGTCTATCTTTTGAAAAAGGTAAGACAATGA-----AGAAA---------------TAAA--AACCAT-----TACTTCTTAGTTGA------------------TTACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------TATA-----TTATATTTATCTT---------TTAGGGTCGTCGCTCTGAGGCTGCGCT---TTCCCTGAAGTGGTTGTGGGGTC------GCTA
dp5 XR_group6:11646895-11647154 + GCGTCATTTTCTTCTTCATGCCGGAATCCCCCACATATTTGGTAAG---------CGCACAG-----AGCCA---CTACGCCTTG---------------------------------TACCTGTCATTTGCATGT------------------------------------------------------------------------------------------------CTAAAAGTCTGCTATCTAAAAGTCAAGGCAGTGTCC-AAAAGATA-----------------TTGGGAATGACCAAGCTAAAGATATCAAAATAATCAAAGTGACATTCTCGTAATCCCATCG---------------------------------------------------------------------------------------------------------------------------------ACAGGTGGCAAA------------------AGGTCGTTCGGAAAGCGCCATCAAGTCCATTCAGTGGCTGCGTGGCAAGGAATATGA
droPer2 scaffold_20:1571643-1571903 + GCGTCATTTTCTTCTTCATGCCGGAATCTCCCACATATTTGGTAAG---------CGCACAG-----AGCCA---CTACGCCTTG---------------------------------TACCTGTCATCTGCATGT------------------------------------------------------------------------------------------------CTAAAAGTCTGCTATCTAAAAGTCAAGGCAGTGTCGGAAAAGATA-----------------TTGGGAGTGCCCAAGCTAAAGATATCAAAATAATCAAAGTGACATTCTCGTAATCCCATCG---------------------------------------------------------------------------------------------------------------------------------ACAGGTGGCAAA------------------AGGTCGTTCGGAAAGCGCCATCAAGTCCATTCAGTGGCTGCGTGGCAAGGAATATGA
droWil2 scf2_1100000004943:15330836-15330998 + TGGTGGGCATGTTCTTCTTGCCCGAAACGCCCGTGTACCTGCTGAAGAAGGTGAGTGATGAGCTTC-ATA----------------GTTCCGATTATAC-----TCATGATTAACTAA------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACACTTTTAT---------CCAGGGCCGACGTGCTGATGCTGCTCT---CTCGTTGAAATGGCTGTGGGGTC------GTTT
droVir3 scaffold_13049:22702058-22702178 + GCGTTATATTCTTCTTCATGCCGGAATCGCCCACATATTTGGTAAGTTGC------------------AAATGTA-----------T------------AAAATTATAGATG-----------------------------------------------------------------------CAATAGTAT-----------------------CTAAGATGTGTGTGTAA-----------------------------------------------------------------------------------------------------------------ATTCCATTCA---------------ACAGGTTTC-CAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA
droMoj3 scaffold_6680:17319919-17320139 + GCGTCATATTCTTCTTCATGCCGGAATCTCCCACATATTTGGTAAGTTTG------------------AGATATA-----------C------------AC---------------------------------------------------------------------------------ATATATATTTCCAGGGTACTTTTAGATTTGTATCAGAAATACTTTT-----------------------------------------------------------------------------------------------------------------TTATATTCAATAC------------------------------------------------------------------------------------------------------CTTTCAATA---TTAATGAATATACCTCGCTCTGTATCAGGTT---------TCAAA-GAATCGCTCAGAGTCCGCCGTGAAATCTATTCAATGGCTGCGTGGTACGGAATACGA
droGri2 scaffold_14906:2204503-2204685 + TTGTGGGCATGATCATGCTGCCAGAGACGCCTGTTTATCTCCTGAAGAAGGTAAGCAAATGA-----ATAGTCCT----------CT-------------------------------TCCTTTCTATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACATATCCATAAAT--------------------------------------------------------------------------------------TTT---CTATTACAT------TTAA-----TTATTGATCACCT---------GCAGGGTCGTCGTGCAGATGCTGCTTT---GTCGCTCAAGTGGCTGTGGGGTC------GTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCGTCGGCCTGTTTATCGTGCCCGAAACGCCAGTGTATCTACTTAAAAGGGTAAGGAACCTT-----GGAAACCA----------GTCAAA----------------------------------------------------------------------------------AACTTTACCAAAAATCAAT-----------------------CTGAAGTATTTTTGAAA-----------------------------------------------------------------------------------------------------------------TCTTTATTCC---------------AAATATTTT-CGAAA-------TGCTCCGGT-----TTTGTATAGTTTGGACGA-TGATTAGATTATCAATATTGCTTTATACTGA-------------------------TTTACACGTTTTTAAATT---------GCAGGGTAGGCGCTCCGAGGCCAATCG---TGCACTAAAATGGCTGTGGGGAG------ATTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................ATTTT-CGAAA-------TGCTC..............................................................................................................................................................................1512.00200000000002000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAAAATGGCTGTGGGGA...........2111.00100010000000000000
.............................................................................................................................................................................................AAT-----------------------CTGAAGTATTTTTGAAA-----------------------------------------------------------------------------------------------------------------TC................................................................................................................................................................................................................................2211.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGCGCTCCGAGGCCAATCG---TGCACTA..........................2911.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAATGGCTGTGGGGAG------A...2011.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAATGGCTGTGGGGA...........1811.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGAGGCCAATCG---TGCAC............................2111.00100000100000000000
................CGTGCCCGAAACGCCAGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................ATTTT-CGAAA-------TGCTCT.............................................................................................................................................................................16200.35700000000007000000
........................................................................................................................................................................................................................TGAAGTATTTTTGAA....................................................................................................................................................................................................................................................................................................................................................1540.25100000010000000000
droSec2
TCGTCGGCCTGTTTATCGTGCCCGAAACGCCAGTGTATCTACTTAAAAGGGTAAGGAACCTT-----GGAAACCA----------GTCAAA----------------------------------------------------------------------------------AACTTTACCAAAAACCAAT-----------------------CTGAAGTATTTTTGAAA-----------------------------------------------------------------------------------------------------------------TCTTAATTCC---------------AAATATTTT-CCAAA-------TGCTTCGGTTACGTTTTATATAGTTTGGAC---------GATTATCAATATTGCTTTATACTGA-------------------------TTTACACGTTTTTAAATT---------GCAGGGTAGGCGCTCCGAGGCCAGTCG---CGCACTAAAATGGCTGTGGGGAG------ATTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................TTTT-CCAAA-------TGCTTCGGTTACG......................................................................................................................................................................2211.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAAAATGGCTGTGGGGA...........2111.0010100
..........................ACGCCAGTGTATCTACTTAAAAGGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGAGGCCAGTCG---CGC..............................1911.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAAATGGCTGTGGGGA...........1911.0010001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTAAAATGGCTGTGGGGAG------AT..2311.0011000
........CTGTTTATCGTGCCCGAAACGCCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
dm3
TCGTCGGCCTGTTTATCGTGCCCGAGACGCCAGTGTATCTACTTAAAAACGTAAGGGTCTCA-----GG-------------------------------------------------------------------T-------CCCTG------------AGAGCTATACAAAATTGT---ATAAACCTTT-----------------------CTAAAGTATTTTTTAAA-----------------------------------------------------------------------------------------------------------------TCTTTATTCC---------------AAATATTTT-TCAAATGCTAAATGCTTCGGTTACGTTTTGTATAGTTCAGACAA-TGATTTGATTATCAATATTTATTTATACGG-----------------------------ACACATTTTTAAATT---------GCAGGGTAAGCGCTCCGAGGCCAATCG---CGCACTAAAATGGCTGTGGGGAG------ATTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGCGCTCCGAGGCCAAT......................................2113.0030000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TGCCCGAGACGCCAGTGTATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CGCCAGTGTATCTACTTAAAAACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---CGCACTAAAATGGCTGTGGGGA...........2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..........GTTTATCGTGCCCGAGACGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGG-----------------------------ACACATTTTTAAATT---------GCAGATC........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAATGGCTGTGGGGA...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TGTTTATCGTGCCCGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGTGCCCGAGACGCCAGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GCAGGGTAAGCGCTCCGAGGCCAA.......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG---CGCACTAAAATGGCTGTGGGGAG------....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTAAGCGCTCCGAGGCCAAT......................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GTTTATCGTGCCCGAGACGCCAGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CCTGTTTATCGTGCCCGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..........GTTTATCGTGCCCGAGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TGTTTATCGTGCCCGAGACGCCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTATAGTTCAGACAA-TGATTTGAT.........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAAATGGCTGTGGGG............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCTACTTAAAAACGTAAGGGTCTCA-----GG-------------------------------------------------------------------T-------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GAGACGCCAGTGTATCTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATT---------GCAGGGTAAGCGCTCCGAGGC..........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCAATCG---CGCACTAAAAT......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGTGCCCGAGACGCCAGTGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droEre2
TCTTCGGCCTGTTTATCGTGCCCGAAACTCCAGTATATCTACTTAAGAGGGTAAGGGACTTG-----AGAAACCC----------GGCAA-----------------------------------------------------------------------------------------------------T-----------------------ATAAAGTATTTTT--------------------------------------------------ATGAAGGCATGCAATA-------CTATTAGAACGTATATAT--------------------CTTA--------------------------------------------------------------------------------A-TGATTTGATGAACCATATTGACTTAGACTGT-------------------------GGTA--CCCTTTTGAATT---------CCAGGGCAAGCGCTCCGAGGCGAATCG---CGCACTAAAATGGCTGTGGGGAG------ATTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............TATCGTGCCCGAAACTCCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0041000210
..............ATCGTGCCCGAAACTCCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030002100
........CTGTTTATCGTGCCCGAAACTCCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0031000020
...............................AGTATATCTACTTAAGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAATGGCTGTGGGGA...........1812.0020000200
..TTCGGCCTGTTTATCGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
................................GTATATCTACTTAAGAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGCGCTCCGAGGCGAATCG---CGCA.............................2711.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGCTCCGAGGCGAATCG---CGCA.............................2511.0010000100
........CTGTTTATCGTGCCCGAAACTCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAATCG---CGCACTAAAATGGCT..................2411.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAAATGGCTGTGGGGA...........1911.0010000100
..................................ATATCTACTTAAGAGGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.....GGCCTGTTTATCGTGCCCGAAACTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---CGCACTAAAATGGCTGTGGGGA...........2411.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATCG---CGCACTAAAATGG....................2011.0010000010
.CTTCGGCCTGTTTATCGTGCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAAATGGCTGTGGGGAG------....2011.0010000100
..................................ATATCTACTTAAGAGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
droYak3
TCTGCGGCCTGTTTATCGTGCCTGAAACTCCAGTATATCTACTTAAAAGGGTAAGGAACTAC-----ACAAA-------------------------------------------------------------------------------------------------------TTTT---ATAAATCAAT-----------------------CTTTAGTTTTT------C------------------------------------------GA-----------------TTGGGATTTTCTAGG-----------------------TTGATGTCCTA--------------------------------------------------------------------------------A-TGATTTTATTAACAATTTTGA-------------------------------------------TTATTTAATT---------CCAGGGTAAGCGCTCCGAGGCCAATCG---CGCACTAAAATGGCTGTGGGGAG------ATTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............TATCGTGCCTGAAACTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCTCCGAGGCCAATCG---CGC..............................2312.00200000020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAAATGGCTGTGGGGA...........1911.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAATGGCTGTGGGGAG------A...2011.00100000010000
............TTATCGTGCCTGAAACTCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CGCACTAAAATGGCTGTGGGGA...........2311.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATGGCTGTGGGGAG------AT..2011.00100000010000
.....................CTGAAACTCCAGTATATCTACTTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110000000000
.....................CTGAAACTCCAGTATATCTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...........................CTCCAGTATATCTACTTAAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAAAATGGCTGTGGGGA...........2111.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCTCCGAGGCCAATCG---CG...............................2211.00100000010000
droEug1
TAATTGGTCTTCTCTTCCTGCCTGAAACTCCAGTTTATCTTCTAAAGAGGGTAAGTCCGTTC-----AGAGAATC----------AATGAT----------------------------------------------------------------------------------GA--ATTCTAG---------------------------------------------------------------GAAATATAAT-------------GAAAATATAAGGA-AACAGAAATC-----------------TCAGACAG------------AGATAGATTTTTATGTTCCAGGTTCTAAGCTTTCTAAGT--------------------------------------------------------------------------------------CTC---ATATTACTA------ATAC-----CTTATTTTGTCTT---------ACAGGGAAAACGCTCCGAGGCCAATCG---CGCACTGAAATGGTTGTGGGGTG------ATTASizeHit CountTotal NormTotal
No Reads
droBia1
TAATCGGACTCTTTTTCCTGCCCGAAACTCCTGTCTACCTCCTTAAAAGGGTAAGCAAACTG-----AGAAACCC----------ATTTAA----------------------------------------------------------------------------------ATATATACTAT---------------------------------------------------------------CTAACAGTTT-------------GTAATAATACGGAGAACTGAAATA-----------------TTACATTTAAATATGATTTACGTTACATTTT-ATATTA-AAAC------------------------------------------------------------------------------------------------------ATTTTGATA---TTA------AAA------CCAATTTGGACTT---------GCAGGGCAAACGATCCGAGGCCAACAG---CGCCTTGAAATGGTTGTGGGGTG------ATTASizeHit CountTotal NormTotal
No Reads
droTak1
TAATCGGCCTGTTCTTCCTGCCCGAAACTCCAGTGTATCTTCTTAAAAGGGTAAGCGAGTTG-----ATTTC--------------------------------------------------------------------ATGTTTTTTATATTTTTAAAAACGC----------CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA------CCAATTTTGACTT---------TCAGGGCAAGCGTTCCGAGGCCAATAG---CGCCCTGAAATGGTTGTGGGGTG------ACTASizeHit CountTotal NormTotal
No Reads
droEle1
TAATCGGTCTGTTTTTTCTGCCCGAAACTCCAGTCTACCTGCTTAAAAGGGTATGTGGGCTG-----GGAAAACC----------ATTTAT----------------------------------------------------------------------------------AACTATACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CAGAAAAAAATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGAAAATAATT-----------------------TTAAAGTATTTTGCAGA-----------------------------------------------------------------------------------------------------------------CCTTTAAAGC---------------AAAAAATTTCACAGT-------TGT-----------TCTGTGCATCGCCGACTAGGGATCATTTTATCA---TAATTTAAAGCTAA-------------------------ATTATGCGCTTGGACCGACCATTGAGGACAACGGAGATGGTCC--GGCCAATTA---GGCACTCAAT---------------------TGSizeHit CountTotal NormTotal
No Reads
droFic1
TGGTCGGTCTGTTCTTCCTGCCCGAAACTCCTGTCTATCTGCTTAAAAGGGTAAGCGAACCA-----AGGAAAGC----------AGATAG----------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotal
No Reads
droKik1
TCTGTGGCCTGCTCATCCTGCCAGAGACCCCAGTCTATCTGCTTAAGAAGGTTAGTGAGCTG-----GGAATATA-----------C------------ATATTTTGGACTTAGCTGA------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTCCCACCTT---------GCAGGGTCGCCGTTCCGAGGCCGCTCT---CTCGTTGAAATGGCTGTGGGGCC------GCTASizeHit CountTotal NormTotal
No Reads
droAna3
TGGCTGGACTTTTTATTCTGCCCGAAACTCCAGTCTATCTTTTGAAAAAGGTAAGTTAAAAGAATGAAGA---------------AATTTG--AAATAT-----TACTATTTAACTAA------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTAATCTT---------TTAGGGTCGTCGCTCTGAGGCTGCTCT---TTCGCTGAAATGGCTTTGGGGTC------GCTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGAGGCTGCTCT---TTCG.............................2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCGCTCTGAGGCTGCT......................................2011.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTCGTCGCTCTGAGGC..........................................1911.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGCTCT---TTCGCTGAAATGG....................2311.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGAAATGGCTTTGGGGTC------GC..2311.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCTGAAATGGCTTTGGGGTC------GC..2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCT---TTCGCTGAAATGGCTTTGGG.............2811.001100000
..............ATTCTGCCCGAAACTCCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGCTTTGGGGTC------GCT.1911.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTCTGAGGCTGCTCT---TT...............................2111.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGCTCT---TTCGCTGA.........................2011.001001000
........CTTTTTATTCTGCCCGAAACTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGCTCTGAGGCTGCTCC---.................................2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTCTGAGGCTGCTCT---TC...............................2111.001010000
droBip1
TGGCTGGACTTTTCATCCTGCCCGAGACTCCAGTCTATCTTTTGAAAAAGGTAAGACAATGA-----AGAAA---------------TAAA--AACCAT-----TACTTCTTAGTTGA------------------TTACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------TATA-----TTATATTTATCTT---------TTAGGGTCGTCGCTCTGAGGCTGCGCT---TTCCCTGAAGTGGTTGTGGGGTC------GCTASizeHit CountTotal NormTotal
No Reads
dp5
GCGTCATTTTCTTCTTCATGCCGGAATCCCCCACATATTTGGTAAG---------CGCACAG-----AGCCA---CTACGCCTTG---------------------------------TACCTGTCATTTGCATGT------------------------------------------------------------------------------------------------CTAAAAGTCTGCTATCTAAAAGTCAAGGCAGTGTCC-AAAAGATA-----------------TTGGGAATGACCAAGCTAAAGATATCAAAATAATCAAAGTGACATTCTCGTAATCCCATCG---------------------------------------------------------------------------------------------------------------------------------ACAGGTGGCAAA------------------AGGTCGTTCGGAAAGCGCCATCAAGTCCATTCAGTGGCTGCGTGGCAAGGAATATGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAA------------------AGGTCGTTCGGA.............................................1812.0020100000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCCATTCAGTGGCTGCGTGG............2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGGCTGCGTGGCAAGGAAT....2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------------------AGGTCGTTCGGAAAGCGC.......................................2111.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCAGTGGCTGCGTGGCAA.........2111.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGGCTGCGTGGCAAGGAA.....2111.0010000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGCTGCGTGGCAAGGA......1911.0010000001000
..GTCATTTTCTTCTTCATGCCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAA------------------AGGTCGTTCGGAAAGCGCCAT....................................2611.0010100000000
..............................................................................................................................................................................................................................................................................................................................................GACATTCTCGTAATCCCATCG---------------------------------------------------------------------------------------------------------------------------------ACAG...................................................................................2511.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA------------------AGGTCGTTCGGAAAGCGC.......................................2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGAAAGCGCCATCAAGTCC.............................2311.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCAGTGGCTGCGTGGC...........1911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCAGTGGCTGCGTGGCA..........2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------------------AGGTCGTTCGGAAAGCGCCATCAA.................................2711.0010000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAA------------------AGGTCGTTCGGAAAGCGCC......................................2511.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAA------------------AGGTCGTTCGGA.............................................1711.0010000000001
droPer2
GCGTCATTTTCTTCTTCATGCCGGAATCTCCCACATATTTGGTAAG---------CGCACAG-----AGCCA---CTACGCCTTG---------------------------------TACCTGTCATCTGCATGT------------------------------------------------------------------------------------------------CTAAAAGTCTGCTATCTAAAAGTCAAGGCAGTGTCGGAAAAGATA-----------------TTGGGAGTGCCCAAGCTAAAGATATCAAAATAATCAAAGTGACATTCTCGTAATCCCATCG---------------------------------------------------------------------------------------------------------------------------------ACAGGTGGCAAA------------------AGGTCGTTCGGAAAGCGCCATCAAGTCCATTCAGTGGCTGCGTGGCAAGGAATATGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGCGTGGCAAGGA......1811.001010000
...............................................................................................................................................................................................................................................................................................................................................ACATTCTCGTAATCCCATCG---------------------------------------------------------------------------------------------------------------------------------AC.....................................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAAGCGCCATCAAGTC..............................1911.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTCAGTGGCTGCGTGGCAAGG.......2611.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTCAGTGGCTGCGTGGCA..........2311.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAA------------------AGGTCGTTCGGA.............................................1811.001100000
droWil2
TGGTGGGCATGTTCTTCTTGCCCGAAACGCCCGTGTACCTGCTGAAGAAGGTGAGTGATGAGCTTC-ATA----------------GTTCCGATTATAC-----TCATGATTAACTAA------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACACTTTTAT---------CCAGGGCCGACGTGCTGATGCTGCTCT---CTCGTTGAAATGGCTGTGGGGTC------GTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGATGCTGCTCT---CTCGT............................2112.00200011
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAATGGCTGTGGGGT...........1912.00200110
..............................CCGTGTACCTGCTGAAGAAGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAAATGGCTGTGGGGT...........2012.00200200
......................CGAAACGCCCGTGTACCTGCTGAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCTGCTCT---CTCGTTGA.........................2011.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGTGCTGATGCTGCTCT---CTCGT............................2511.00100010
........ATGTTCTTCTTGCCCGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGATGCTGCTCT---CTCGTTGAAAT......................2711.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAATGGCTGTGGGGTC------GTTT2411.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGACGTGCTGATGCTGCT......................................2111.00100010
...............................CGTGTACCTGCTGAAGAAGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAATGGCTGTGGGGTC------GTTT2311.00100010
..............................CCGTGTACCTGCTGAAGAAGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
......................CGAAACGCCCGTGTACCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---CTCGTTGAAATGGCTGTG...............1911.00100100
............................GCCCGTGTACCTGCTGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..................................................GTGAGTGATGAGCTTC-ATA----------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.................TTGCCCGAAACGCCCGTGTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
......................CGAAACGCCCGTGTACCTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCTGTGGGGTC------GTT.2011.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCGACGTGCTGATGCT.........................................2011.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGATGCTGCTCT---CTC..............................1911.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGTGCTGATGCTGCTCT---CT...............................2211.00110000
droVir3
GCGTTATATTCTTCTTCATGCCGGAATCGCCCACATATTTGGTAAGTTGC------------------AAATGTA-----------T------------AAAATTATAGATG-----------------------------------------------------------------------CAATAGTAT-----------------------CTAAGATGTGTGTGTAA-----------------------------------------------------------------------------------------------------------------ATTCCATTCA---------------ACAGGTTTC-CAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................AATCGCCCACATATTTGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
................CATGCCGGAATCGCCCACATATTTGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000001000000000000000000000000000000000000000000000000000
.........................................GTAAGTTGC------------------AAATGTA-----------T------------AAAATTATAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000010000000000000000000000000000
.........TCTTCTTCATGCCGGAATCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.............CTTCATGCCGGAATCGCCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.......ATTCTTCTTCATGCCGGAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000001000000000000000000000000000000
.....ATATTCTTCTTCATGCCGGAATCGCCCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000010000000000000000000000000000000000000000000000
droMoj3
GCGTCATATTCTTCTTCATGCCGGAATCTCCCACATATTTGGTAAGTTTG------------------AGATATA-----------C------------AC---------------------------------------------------------------------------------ATATATATTTCCAGGGTACTTTTAGATTTGTATCAGAAATACTTTT-----------------------------------------------------------------------------------------------------------------TTATATTCAATAC------------------------------------------------------------------------------------------------------CTTTCAATA---TTAATGAATATACCTCGCTCTGTATCAGGTT---------TCAAA-GAATCGCTCAGAGTCCGCCGTGAAATCTATTCAATGGCTGCGTGGTACGGAATACGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT---------TCAAA-GAATCGCTCAGAGTCCGC.......................................2611.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTT---------TCAAA-GAATCGCTCAGAGTCCGCC......................................2811.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATCTATTCAATGGCTGCGT..............2411.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCAATGGCTGCGTGGTACGGA......2511.001000001
...........TTCTTCATGCCGGAATCTCCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTGCGTGGTACGGAATAC..2311.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATTCAATGGCTGCGTGGT...........2211.001100000
.......ATTCTTCTTCATGCCGGAATCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100
.....ATATTCTTCTTCATGCCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCTATTCAATGGCTGC................2011.001100000
droGri2
TTGTGGGCATGATCATGCTGCCAGAGACGCCTGTTTATCTCCTGAAGAAGGTAAGCAAATGA-----ATAGTCCT----------CT-------------------------------TCCTTTCTATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACATATCCATAAAT--------------------------------------------------------------------------------------TTT---CTATTACAT------TTAA-----TTATTGATCACCT---------GCAGGGTCGTCGTGCAGATGCTGCTTT---GTCGCTCAAGTGGCTGTGGGGTC------GTTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGCAGATGCTGCTTT---GTCG.............................2311.00110
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---GTCGCTCAAGTGGCTGTGGGGTC------....2511.00110

Generated: 05/18/2015 at 03:32 PM